Wall clock time and date at job start Tue Mar 31 2020 18:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50867 * 2 1 4 4 C 1.52863 * 109.58013 * 239.98641 * 2 1 3 5 5 N 1.47167 * 108.75249 * 187.15474 * 4 2 1 6 6 C 1.34778 * 121.07672 * 231.25539 * 5 4 2 7 7 O 1.21284 * 119.99515 * 5.56854 * 6 5 4 8 8 C 1.50702 * 120.00006 * 185.56720 * 6 5 4 9 9 C 1.52994 * 110.94415 * 54.21803 * 8 6 5 10 10 C 1.54639 * 111.03392 * 178.20445 * 8 6 5 11 11 C 1.51098 * 104.82287 * 93.34306 * 10 8 6 12 12 C 1.30794 * 110.94919 * 16.49121 * 11 10 8 13 13 C 1.51102 * 111.15182 * 359.94965 * 12 11 10 14 14 C 1.47323 * 117.84949 * 50.98100 * 5 4 2 15 15 C 1.52352 * 108.46666 * 311.12306 * 14 5 4 16 16 C 1.54380 * 110.37202 * 173.35769 * 15 14 5 17 17 C 1.54452 * 102.87919 * 152.38660 * 16 15 14 18 18 N 1.47083 * 107.29692 * 338.50493 * 17 16 15 19 19 C 1.36936 * 125.63139 * 179.03287 * 18 17 16 20 20 H 1.08006 * 120.00225 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00336 * 0.02562 * 19 18 17 22 22 N 1.31627 * 119.99530 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00599 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47015 * 59.99735 * 23 21 19 25 25 H 1.48494 * 109.47208 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46831 * 300.00470 * 23 21 19 27 27 C 1.47576 * 108.73845 * 359.01474 * 18 17 16 28 28 O 1.41874 * 111.47988 * 49.87865 * 15 14 5 29 29 H 1.08998 * 109.47128 * 299.89392 * 1 2 3 30 30 H 1.08996 * 109.47421 * 59.89815 * 1 2 3 31 31 H 1.09001 * 109.47223 * 179.89950 * 1 2 3 32 32 H 1.09002 * 109.55944 * 67.35002 * 4 2 1 33 33 H 1.08994 * 109.46814 * 306.90933 * 4 2 1 34 34 H 1.08998 * 109.47508 * 189.96109 * 9 8 6 35 35 H 1.09000 * 109.47224 * 309.95811 * 9 8 6 36 36 H 1.09002 * 109.47485 * 69.95713 * 9 8 6 37 37 H 1.08996 * 110.38623 * 212.21041 * 10 8 6 38 38 H 1.09003 * 110.38484 * 334.47175 * 10 8 6 39 39 H 1.08002 * 124.44481 * 196.48735 * 11 10 8 40 40 H 1.08001 * 124.40203 * 179.97438 * 12 11 10 41 41 H 1.09001 * 110.38889 * 224.78423 * 13 12 11 42 42 H 1.09001 * 110.48156 * 102.45146 * 13 12 11 43 43 H 1.09002 * 109.63683 * 70.81663 * 14 5 4 44 44 H 1.09005 * 109.63837 * 191.42568 * 14 5 4 45 45 H 1.09002 * 110.72716 * 270.73188 * 16 15 14 46 46 H 1.08997 * 110.72984 * 34.03482 * 16 15 14 47 47 H 1.08996 * 109.88147 * 97.92924 * 17 16 15 48 48 H 1.09001 * 109.88118 * 218.92804 * 17 16 15 49 49 H 0.96997 * 119.99817 * 179.97438 * 22 21 19 50 50 H 1.09005 * 110.36860 * 264.48072 * 27 18 17 51 51 H 1.09001 * 110.37453 * 142.14099 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0423 -0.7204 -1.2471 5 7 3.5036 -0.8619 -1.1450 6 6 4.3121 -0.4724 -2.1505 7 8 3.8480 0.0953 -3.1166 8 6 5.7928 -0.7424 -2.0744 9 6 6.0660 -2.2272 -1.8265 10 6 6.5130 -0.2511 -3.3516 11 6 6.9735 1.1496 -3.0212 12 6 6.9458 1.3587 -1.7304 13 6 6.4618 0.1337 -0.9899 14 6 4.0544 -1.4373 0.0943 15 6 3.4215 -0.7221 1.2813 16 6 3.8409 -1.4002 2.6033 17 6 3.7626 -0.2433 3.6236 18 7 3.8529 1.0144 2.8664 19 6 3.8028 2.2735 3.4023 20 1 3.8777 3.1377 2.7589 21 6 3.6556 2.4393 4.7726 22 7 3.5648 1.3861 5.5569 23 14 3.5866 4.1569 5.5037 24 1 2.4336 4.8942 4.9273 25 1 3.4274 4.0617 6.9770 26 1 4.8444 4.8802 5.1878 27 6 4.0068 0.6953 1.4338 28 8 2.0081 -0.6766 1.1670 29 1 -0.3633 0.5122 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3634 -1.0277 -0.0018 32 1 1.7919 -0.1379 -2.1337 33 1 1.5826 -1.7066 -1.3115 34 1 7.1227 -2.3694 -1.6002 35 1 5.4648 -2.5717 -0.9851 36 1 5.8051 -2.7984 -2.7175 37 1 7.3680 -0.8892 -3.5747 38 1 5.8221 -0.2348 -4.1946 39 1 7.2838 1.8794 -3.7543 40 1 7.2313 2.2861 -1.2562 41 1 5.7356 0.4136 -0.2267 42 1 7.3010 -0.3956 -0.5386 43 1 3.8202 -2.5009 0.1400 44 1 5.1350 -1.2960 0.1151 45 1 3.1435 -2.1953 2.8672 46 1 4.8582 -1.7852 2.5336 47 1 2.8147 -0.2857 4.1600 48 1 4.5908 -0.3143 4.3287 49 1 3.4623 1.5019 6.5145 50 1 5.0604 0.7029 1.1545 51 1 3.4467 1.4048 0.8247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071209305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:01 Heat of formation + Delta-G solvation = -11.523744 kcal Electronic energy + Delta-G solvation = -31995.537715 eV Core-core repulsion = 28089.843279 eV Total energy + Delta-G solvation = -3905.694436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.22268 -39.39681 -37.56444 -36.16734 -34.89881 -33.17864 -31.92615 -31.19541 -29.43014 -28.66594 -28.00931 -26.60919 -26.10438 -25.29646 -23.78892 -22.28929 -21.49761 -20.18027 -19.26335 -19.14336 -18.59852 -17.09850 -16.75148 -16.54639 -16.06512 -15.58881 -15.16377 -15.04264 -14.66187 -14.22152 -14.11224 -13.75696 -13.56264 -13.18408 -13.11031 -12.88684 -12.82113 -12.50312 -12.30193 -12.24871 -12.10966 -11.98648 -11.80915 -11.67378 -11.52011 -11.37314 -11.13769 -10.99235 -10.92129 -10.83309 -10.70068 -10.38175 -10.22094 -10.13156 -10.06246 -9.69139 -9.59940 -9.51793 -8.86916 -8.57947 -8.32623 -6.81816 -5.70881 -3.03773 2.27418 2.62050 2.88326 3.40750 3.45215 3.46200 3.89367 4.28754 4.36763 4.48249 4.53739 4.76878 4.84413 5.00137 5.04637 5.12948 5.21666 5.22843 5.27738 5.39661 5.44050 5.47873 5.54201 5.55395 5.61449 5.62481 5.64592 5.67088 5.72111 5.80179 5.81948 5.86256 5.88845 5.95778 6.03514 6.11625 6.17104 6.22577 6.36642 6.43364 6.45491 6.51051 6.60294 6.61832 6.87954 7.36984 7.53178 7.61760 7.70182 7.83325 8.16633 8.25606 9.21956 9.81630 10.46957 11.40771 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.004455 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.183279 B = 6284.127070 C = 7189.288626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.610 5.610 6 C 0.537 3.463 7 O -0.540 6.540 8 C -0.088 4.088 9 C -0.150 4.150 10 C -0.080 4.080 11 C -0.163 4.163 12 C -0.164 4.164 13 C -0.107 4.107 14 C 0.082 3.918 15 C 0.090 3.910 16 C -0.131 4.131 17 C 0.182 3.818 18 N -0.596 5.596 19 C -0.228 4.228 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.116 3.884 28 O -0.347 6.347 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.045 0.955 49 H 0.253 0.747 50 H 0.028 0.972 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -9.018 -14.777 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.085 0.915 4 C -0.038 4.038 5 N -0.343 5.343 6 C 0.325 3.675 7 O -0.417 6.417 8 C -0.091 4.091 9 C -0.207 4.207 10 C -0.117 4.117 11 C -0.181 4.181 12 C -0.182 4.182 13 C -0.144 4.144 14 C -0.041 4.041 15 C 0.049 3.951 16 C -0.169 4.169 17 C 0.058 3.942 18 N -0.322 5.322 19 C -0.356 4.356 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 C -0.010 4.010 28 O -0.265 6.265 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.045 0.955 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.924 -8.708 -14.930 17.530 hybrid contribution 0.117 1.117 0.325 1.169 sum 3.041 -7.592 -14.605 16.739 Atomic orbital electron populations 1.21667 0.92485 1.02720 1.02803 1.22361 0.95316 0.96313 0.84750 0.91536 1.22277 0.79740 1.01659 1.00161 1.48093 1.06697 1.62710 1.16763 1.20259 0.88098 0.77327 0.81791 1.90642 1.76650 1.41472 1.32912 1.21577 0.91713 0.97327 0.98472 1.22116 1.02958 0.92619 1.02970 1.21311 0.99235 0.94269 0.96902 1.23246 1.00913 0.97232 0.96723 1.23299 1.00816 0.98523 0.95575 1.21889 1.00785 0.94217 0.97502 1.22676 1.00178 0.97850 0.83413 1.22360 0.81799 0.96899 0.94084 1.22864 1.00051 1.00067 0.93961 1.21158 1.01308 0.81236 0.90534 1.44384 1.85901 1.02504 0.99392 1.18962 1.43419 0.82526 0.90718 0.90754 1.24761 1.02068 0.97318 0.95992 1.69944 1.56262 1.26991 1.03580 0.86221 0.77887 0.83662 0.78124 1.21215 1.21546 1.21211 1.22082 0.96868 0.93272 0.88824 1.87837 1.19733 1.76669 1.42301 0.91074 0.91255 0.91926 0.88476 0.90945 0.91059 0.90797 0.91911 0.90180 0.89707 0.85802 0.85562 0.88876 0.89308 0.90626 0.87720 0.90792 0.90928 0.93175 0.93723 0.93706 0.95483 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.57 37.16 0.36 -1.44 16 2 C 0.07 1.11 3.19 -26.80 -0.09 1.02 16 3 H 0.07 1.19 6.27 -51.93 -0.33 0.86 16 4 C 0.08 1.17 5.90 -3.75 -0.02 1.14 16 5 N -0.61 -8.63 2.96 -172.96 -0.51 -9.15 16 6 C 0.54 7.96 6.52 -10.98 -0.07 7.89 16 7 O -0.54 -9.53 15.02 5.55 0.08 -9.45 16 8 C -0.09 -1.05 0.58 -153.94 -0.09 -1.14 16 9 C -0.15 -1.38 8.15 37.15 0.30 -1.08 16 10 C -0.08 -0.91 5.70 -26.83 -0.15 -1.06 16 11 C -0.16 -1.94 10.80 -35.77 -0.39 -2.32 16 12 C -0.16 -2.07 10.78 -35.77 -0.39 -2.46 16 13 C -0.11 -1.33 4.70 -26.83 -0.13 -1.46 16 14 C 0.08 1.10 3.02 -3.92 -0.01 1.09 16 15 C 0.09 1.55 0.83 -89.65 -0.07 1.47 16 16 C -0.13 -2.31 6.12 -25.25 -0.15 -2.47 16 17 C 0.18 4.33 5.38 -2.96 -0.02 4.31 16 18 N -0.60 -15.01 3.40 -170.32 -0.58 -15.59 16 19 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 20 H 0.07 2.03 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -26.80 10.31 55.49 0.57 -26.23 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.12 2.37 5.86 -2.87 -0.02 2.35 16 28 O -0.35 -6.31 9.92 -35.22 -0.35 -6.66 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.37 7.06 -51.93 -0.37 1.00 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 35 H 0.07 0.67 4.64 -51.93 -0.24 0.43 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 38 H 0.08 1.08 7.04 -51.93 -0.37 0.71 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.09 1.35 3.25 -51.93 -0.17 1.18 16 42 H 0.09 0.94 7.73 -51.93 -0.40 0.54 16 43 H 0.08 0.89 7.80 -51.93 -0.41 0.49 16 44 H 0.10 1.29 3.54 -51.93 -0.18 1.10 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.09 7.99 -51.93 -0.42 0.68 16 47 H 0.05 1.35 7.39 -51.93 -0.38 0.97 16 48 H 0.04 1.15 7.50 -51.93 -0.39 0.77 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.03 0.54 5.19 -51.93 -0.27 0.27 16 51 H 0.04 0.87 6.11 -51.93 -0.32 0.55 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.42 373.74 -9.34 -41.76 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.98 Total: 3.42 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.19 Total: -0.89 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.52 Total: -50.97 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.27 Total: -16.11 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.42 -9.34 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071209305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.236 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds