Wall clock time and date at job start Tue Mar 31 2020 18:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50867 * 2 1 4 4 C 1.52863 * 109.58013 * 239.98641 * 2 1 3 5 5 N 1.47167 * 108.75249 * 187.15474 * 4 2 1 6 6 C 1.34778 * 121.07672 * 231.25539 * 5 4 2 7 7 O 1.21284 * 119.99515 * 5.56854 * 6 5 4 8 8 C 1.50702 * 120.00006 * 185.56720 * 6 5 4 9 9 C 1.52994 * 110.94415 * 54.21803 * 8 6 5 10 10 C 1.54639 * 111.03392 * 178.20445 * 8 6 5 11 11 C 1.51098 * 104.82287 * 93.34306 * 10 8 6 12 12 C 1.30794 * 110.94919 * 16.49121 * 11 10 8 13 13 C 1.51102 * 111.15182 * 359.94965 * 12 11 10 14 14 C 1.47323 * 117.84949 * 50.98100 * 5 4 2 15 15 C 1.52352 * 108.46666 * 311.12306 * 14 5 4 16 16 C 1.54380 * 110.37202 * 173.35769 * 15 14 5 17 17 C 1.54452 * 102.87919 * 152.38660 * 16 15 14 18 18 N 1.47083 * 107.29692 * 338.50493 * 17 16 15 19 19 C 1.36936 * 125.63139 * 179.03287 * 18 17 16 20 20 H 1.08006 * 120.00225 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00336 * 0.02562 * 19 18 17 22 22 N 1.31627 * 119.99530 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00599 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47015 * 59.99735 * 23 21 19 25 25 H 1.48494 * 109.47208 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46831 * 300.00470 * 23 21 19 27 27 C 1.47576 * 108.73845 * 359.01474 * 18 17 16 28 28 O 1.41874 * 111.47988 * 49.87865 * 15 14 5 29 29 H 1.08998 * 109.47128 * 299.89392 * 1 2 3 30 30 H 1.08996 * 109.47421 * 59.89815 * 1 2 3 31 31 H 1.09001 * 109.47223 * 179.89950 * 1 2 3 32 32 H 1.09002 * 109.55944 * 67.35002 * 4 2 1 33 33 H 1.08994 * 109.46814 * 306.90933 * 4 2 1 34 34 H 1.08998 * 109.47508 * 189.96109 * 9 8 6 35 35 H 1.09000 * 109.47224 * 309.95811 * 9 8 6 36 36 H 1.09002 * 109.47485 * 69.95713 * 9 8 6 37 37 H 1.08996 * 110.38623 * 212.21041 * 10 8 6 38 38 H 1.09003 * 110.38484 * 334.47175 * 10 8 6 39 39 H 1.08002 * 124.44481 * 196.48735 * 11 10 8 40 40 H 1.08001 * 124.40203 * 179.97438 * 12 11 10 41 41 H 1.09001 * 110.38889 * 224.78423 * 13 12 11 42 42 H 1.09001 * 110.48156 * 102.45146 * 13 12 11 43 43 H 1.09002 * 109.63683 * 70.81663 * 14 5 4 44 44 H 1.09005 * 109.63837 * 191.42568 * 14 5 4 45 45 H 1.09002 * 110.72716 * 270.73188 * 16 15 14 46 46 H 1.08997 * 110.72984 * 34.03482 * 16 15 14 47 47 H 1.08996 * 109.88147 * 97.92924 * 17 16 15 48 48 H 1.09001 * 109.88118 * 218.92804 * 17 16 15 49 49 H 0.96997 * 119.99817 * 179.97438 * 22 21 19 50 50 H 1.09005 * 110.36860 * 264.48072 * 27 18 17 51 51 H 1.09001 * 110.37453 * 142.14099 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0423 -0.7204 -1.2471 5 7 3.5036 -0.8619 -1.1450 6 6 4.3121 -0.4724 -2.1505 7 8 3.8480 0.0953 -3.1166 8 6 5.7928 -0.7424 -2.0744 9 6 6.0660 -2.2272 -1.8265 10 6 6.5130 -0.2511 -3.3516 11 6 6.9735 1.1496 -3.0212 12 6 6.9458 1.3587 -1.7304 13 6 6.4618 0.1337 -0.9899 14 6 4.0544 -1.4373 0.0943 15 6 3.4215 -0.7221 1.2813 16 6 3.8409 -1.4002 2.6033 17 6 3.7626 -0.2433 3.6236 18 7 3.8529 1.0144 2.8664 19 6 3.8028 2.2735 3.4023 20 1 3.8777 3.1377 2.7589 21 6 3.6556 2.4393 4.7726 22 7 3.5648 1.3861 5.5569 23 14 3.5866 4.1569 5.5037 24 1 2.4336 4.8942 4.9273 25 1 3.4274 4.0617 6.9770 26 1 4.8444 4.8802 5.1878 27 6 4.0068 0.6953 1.4338 28 8 2.0081 -0.6766 1.1670 29 1 -0.3633 0.5122 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3634 -1.0277 -0.0018 32 1 1.7919 -0.1379 -2.1337 33 1 1.5826 -1.7066 -1.3115 34 1 7.1227 -2.3694 -1.6002 35 1 5.4648 -2.5717 -0.9851 36 1 5.8051 -2.7984 -2.7175 37 1 7.3680 -0.8892 -3.5747 38 1 5.8221 -0.2348 -4.1946 39 1 7.2838 1.8794 -3.7543 40 1 7.2313 2.2861 -1.2562 41 1 5.7356 0.4136 -0.2267 42 1 7.3010 -0.3956 -0.5386 43 1 3.8202 -2.5009 0.1400 44 1 5.1350 -1.2960 0.1151 45 1 3.1435 -2.1953 2.8672 46 1 4.8582 -1.7852 2.5336 47 1 2.8147 -0.2857 4.1600 48 1 4.5908 -0.3143 4.3287 49 1 3.4623 1.5019 6.5145 50 1 5.0604 0.7029 1.1545 51 1 3.4467 1.4048 0.8247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071209305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:59 Heat of formation + Delta-G solvation = -31.618191 kcal Electronic energy + Delta-G solvation = -31996.409075 eV Core-core repulsion = 28089.843279 eV Total energy + Delta-G solvation = -3906.565796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.35932 -40.65428 -38.71290 -37.72423 -36.09381 -34.85144 -33.22807 -32.46932 -31.09309 -29.97108 -29.13323 -27.81368 -27.45473 -26.42840 -25.40466 -23.43036 -22.86089 -21.86679 -20.56790 -20.18991 -19.62997 -18.97930 -18.05294 -17.66536 -17.26033 -16.79842 -16.65114 -16.30275 -16.21234 -15.64595 -15.50092 -15.15816 -15.08448 -14.28979 -14.21825 -14.04621 -13.85509 -13.77110 -13.62009 -13.38665 -13.24611 -13.17652 -13.04549 -13.00604 -12.78679 -12.73069 -12.67255 -12.31291 -12.13636 -12.13062 -12.08260 -12.00573 -11.88115 -11.70300 -11.62574 -11.35119 -10.93794 -10.72380 -10.68438 -9.81205 -9.53716 -8.86945 -7.85806 -5.20149 1.33603 1.42714 1.45407 1.50297 1.51944 1.80470 2.47037 2.61318 3.29808 3.31686 3.42403 3.47115 3.62575 3.70821 3.73712 3.87899 3.96391 4.02488 4.06435 4.17402 4.25426 4.34479 4.39141 4.46899 4.51484 4.57544 4.61986 4.66042 4.73959 4.74463 4.79840 4.83804 4.93383 4.94270 4.94554 4.97393 5.02204 5.04484 5.11782 5.15580 5.19957 5.28246 5.36049 5.40882 5.62689 5.68181 5.78643 5.94031 6.19073 6.26537 6.35780 7.04474 7.10206 7.76230 8.40022 9.23892 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.004455 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.183279 B = 6284.127070 C = 7189.288626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.070 3.930 3 H 0.032 0.968 4 C 0.090 3.910 5 N -0.611 5.611 6 C 0.531 3.469 7 O -0.575 6.575 8 C -0.085 4.085 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.163 4.163 12 C -0.188 4.188 13 C -0.105 4.105 14 C 0.091 3.909 15 C 0.097 3.903 16 C -0.116 4.116 17 C 0.189 3.811 18 N -0.617 5.617 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.058 4.058 22 N -0.945 5.945 23 Si 0.973 3.027 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.115 3.885 28 O -0.368 6.368 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.005 0.995 48 H 0.015 0.985 49 H 0.248 0.752 50 H 0.044 0.956 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -10.978 -16.379 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.050 0.950 4 C -0.033 4.033 5 N -0.343 5.343 6 C 0.321 3.679 7 O -0.454 6.454 8 C -0.088 4.088 9 C -0.204 4.204 10 C -0.116 4.116 11 C -0.181 4.181 12 C -0.206 4.206 13 C -0.142 4.142 14 C -0.031 4.031 15 C 0.055 3.945 16 C -0.154 4.154 17 C 0.064 3.936 18 N -0.343 5.343 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.801 3.199 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.010 4.010 28 O -0.287 6.287 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.139 0.861 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.023 0.977 48 H 0.034 0.966 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.973 -10.680 -16.557 20.099 hybrid contribution -0.238 1.818 0.775 1.990 sum 3.735 -8.862 -15.782 18.482 Atomic orbital electron populations 1.21669 0.90564 1.03944 1.02924 1.22454 0.96854 0.94577 0.84969 0.94954 1.22231 0.79951 1.02520 0.98581 1.48179 1.06821 1.62442 1.16857 1.20865 0.89368 0.76435 0.81264 1.90625 1.77518 1.42958 1.34344 1.21648 0.89377 0.99293 0.98463 1.22150 1.04558 0.90118 1.03555 1.21362 0.99780 0.94358 0.96107 1.23500 0.99920 0.97933 0.96705 1.23422 1.02053 0.98906 0.96175 1.21882 1.00856 0.94472 0.96984 1.22698 1.00582 0.98761 0.81083 1.22321 0.81684 0.94761 0.95716 1.22770 1.02782 0.97857 0.92028 1.20902 0.97694 0.83273 0.91704 1.44651 1.85812 1.02184 1.01685 1.19271 1.42976 0.83940 0.91160 0.91164 1.25541 1.02350 1.00891 0.96386 1.70160 1.57221 1.28695 1.03286 0.85245 0.78068 0.79553 0.77023 1.20879 1.21561 1.20252 1.22259 0.97597 0.95250 0.85881 1.87814 1.20312 1.76777 1.43810 0.93057 0.89025 0.90097 0.88969 0.88479 0.88811 0.90372 0.91121 0.87385 0.91140 0.84752 0.85925 0.91280 0.87043 0.87331 0.86149 0.89136 0.87325 0.97657 0.96647 0.94314 0.93926 0.96347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.57 71.98 0.69 -2.66 16 2 C 0.07 2.16 3.19 30.55 0.10 2.25 16 3 H 0.03 1.21 6.27 -2.39 -0.01 1.20 16 4 C 0.09 2.33 5.90 86.21 0.51 2.84 16 5 N -0.61 -16.01 2.96 -819.50 -2.43 -18.43 16 6 C 0.53 14.81 6.52 87.66 0.57 15.39 16 7 O -0.58 -19.90 15.02 -3.04 -0.05 -19.95 16 8 C -0.08 -1.79 0.58 -51.82 -0.03 -1.82 16 9 C -0.15 -2.06 8.15 71.98 0.59 -1.47 16 10 C -0.08 -1.61 5.70 30.53 0.17 -1.43 16 11 C -0.16 -3.62 10.80 25.98 0.28 -3.34 16 12 C -0.19 -4.54 10.78 25.98 0.28 -4.26 16 13 C -0.11 -2.38 4.70 30.53 0.14 -2.24 16 14 C 0.09 2.16 3.02 86.01 0.26 2.42 16 15 C 0.10 3.19 0.83 -10.16 -0.01 3.18 16 16 C -0.12 -3.91 6.12 31.56 0.19 -3.72 16 17 C 0.19 9.24 5.38 86.76 0.47 9.71 16 18 N -0.62 -32.09 3.40 -692.77 -2.36 -34.44 16 19 C -0.24 -14.10 10.28 84.03 0.86 -13.24 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 21 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 22 N -0.95 -57.09 10.31 21.65 0.22 -56.87 16 23 Si 0.97 46.67 29.55 68.60 2.03 48.69 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 C 0.12 4.77 5.86 86.55 0.51 5.28 16 28 O -0.37 -13.17 9.92 -148.95 -1.48 -14.65 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 2.52 7.06 -2.39 -0.02 2.50 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 0.93 7.90 -2.39 -0.02 0.91 16 35 H 0.08 1.03 4.64 -2.39 -0.01 1.02 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 1.59 7.89 -2.39 -0.02 1.57 16 38 H 0.07 1.68 7.04 -2.39 -0.02 1.66 16 39 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.12 2.96 8.06 -2.91 -0.02 2.93 16 41 H 0.07 1.90 3.25 -2.39 -0.01 1.90 16 42 H 0.11 1.98 7.73 -2.39 -0.02 1.96 16 43 H 0.11 1.98 7.80 -2.39 -0.02 1.97 16 44 H 0.12 2.50 3.54 -2.38 -0.01 2.49 16 45 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.11 2.90 7.99 -2.39 -0.02 2.88 16 47 H 0.01 0.29 7.39 -2.39 -0.02 0.27 16 48 H 0.02 0.82 7.50 -2.39 -0.02 0.81 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.04 1.67 5.19 -2.38 -0.01 1.66 16 51 H 0.02 0.83 6.11 -2.39 -0.01 0.82 16 Total: -1.00 -74.70 373.74 2.92 -71.78 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.93 Total: 19.87 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.05 Total: 4.00 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.56 Total: -109.75 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.52 Total: -34.60 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -74.70 2.92 -71.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071209305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.158 kcal (2) G-P(sol) polarization free energy of solvation -74.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds