Wall clock time and date at job start Tue Mar 31 2020 18:33:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09003 * 109.55236 * 2 1
4 4 C 1.53280 * 109.51043 * 120.12545 * 2 1 3
5 5 N 1.47162 * 108.69479 * 172.93871 * 4 2 1
6 6 C 1.34769 * 121.06370 * 128.78691 * 5 4 2
7 7 O 1.21280 * 120.00590 * 179.97438 * 6 5 4
8 8 C 1.50707 * 119.99755 * 0.02562 * 6 5 4
9 9 C 1.53889 * 113.58612 * 277.66141 * 8 6 5
10 10 C 1.53260 * 86.88210 * 220.42996 * 9 8 6
11 11 C 1.52454 * 128.58309 * 165.11175 * 10 9 8
12 12 C 1.52454 * 128.57903 * 245.05555 * 10 9 8
13 13 C 1.53249 * 87.69314 * 25.08245 * 10 9 8
14 14 C 1.47309 * 117.87661 * 308.76691 * 5 4 2
15 15 C 1.52513 * 108.41382 * 49.36573 * 14 5 4
16 16 C 1.54516 * 110.06665 * 72.16783 * 15 14 5
17 17 C 1.55018 * 101.52917 * 153.09481 * 16 15 14
18 18 N 1.47481 * 104.90059 * 323.62155 * 17 16 15
19 19 C 1.36934 * 125.66671 * 204.00852 * 18 17 16
20 20 H 1.08002 * 120.00210 * 161.52440 * 19 18 17
21 21 C 1.38813 * 119.99795 * 341.52371 * 19 18 17
22 22 N 1.31620 * 120.00048 * 157.57012 * 21 19 18
23 23 Si 1.86806 * 119.99968 * 337.56469 * 21 19 18
24 24 H 1.48495 * 109.46999 * 84.53957 * 23 21 19
25 25 H 1.48498 * 109.46829 * 204.53677 * 23 21 19
26 26 H 1.48498 * 109.46882 * 324.53368 * 23 21 19
27 27 C 1.47186 * 108.67368 * 24.00973 * 18 17 16
28 28 O 1.42067 * 111.12513 * 309.63198 * 15 14 5
29 29 H 1.09001 * 109.47153 * 299.87890 * 1 2 3
30 30 H 1.09009 * 109.47220 * 59.87097 * 1 2 3
31 31 H 1.08999 * 109.47414 * 179.87096 * 1 2 3
32 32 H 1.08997 * 109.62224 * 53.13302 * 4 2 1
33 33 H 1.08998 * 109.62357 * 292.74928 * 4 2 1
34 34 H 1.08993 * 112.83193 * 48.87886 * 8 6 5
35 35 H 1.09008 * 113.64371 * 334.92443 * 9 8 6
36 36 H 1.08996 * 113.65121 * 105.93061 * 9 8 6
37 37 H 1.08999 * 117.51479 * 225.04394 * 11 10 9
38 38 H 1.09003 * 117.51591 * 10.15462 * 11 10 9
39 39 H 1.09000 * 117.51960 * 349.84500 * 12 10 9
40 40 H 1.09003 * 117.51218 * 134.95433 * 12 10 9
41 41 H 1.09001 * 113.64684 * 220.41862 * 13 10 9
42 42 H 1.09006 * 113.64778 * 89.41707 * 13 10 9
43 43 H 1.09000 * 109.67319 * 169.09633 * 14 5 4
44 44 H 1.08998 * 109.67632 * 289.59597 * 14 5 4
45 45 H 1.09006 * 111.01393 * 271.15666 * 16 15 14
46 46 H 1.09001 * 111.01412 * 35.02794 * 16 15 14
47 47 H 1.09001 * 110.35509 * 204.76897 * 17 16 15
48 48 H 1.09000 * 110.44689 * 82.52601 * 17 16 15
49 49 H 0.97006 * 119.99996 * 180.02562 * 22 21 19
50 50 H 1.08998 * 109.91108 * 239.14674 * 27 18 17
51 51 H 1.09002 * 109.91249 * 117.87302 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8948 1.0272 0.0000
4 6 2.0419 -0.7251 1.2496
5 7 3.5034 -0.8646 1.1486
6 6 4.3103 -0.4775 2.1563
7 8 5.5122 -0.6017 2.0527
8 6 3.7188 0.1085 3.4124
9 6 3.3875 1.6068 3.2961
10 6 3.9267 1.7513 4.7234
11 6 4.3152 3.0231 5.4689
12 6 3.1735 2.1453 5.9890
13 6 4.7715 0.4991 4.4647
14 6 4.0564 -1.4412 -0.0891
15 6 3.4311 -0.7194 -1.2782
16 6 4.0007 0.7127 -1.3883
17 6 3.8454 0.9921 -2.9052
18 7 4.1235 -0.3001 -3.5593
19 6 4.5567 -0.4660 -4.8476
20 1 5.0133 -1.3975 -5.1482
21 6 4.4091 0.5632 -5.7674
22 7 5.1793 0.6083 -6.8337
23 14 3.1172 1.8841 -5.4917
24 1 3.6681 2.9370 -4.6013
25 1 2.7391 2.4863 -6.7954
26 1 1.9176 1.2788 -4.8596
27 6 3.8581 -1.3820 -2.5973
28 8 2.0153 -0.6804 -1.1667
29 1 -0.3633 0.5120 0.8911
30 1 -0.3634 0.5159 -0.8889
31 1 -0.3634 -1.0276 -0.0023
32 1 1.5836 -1.7120 1.3137
33 1 1.7900 -0.1459 2.1380
34 1 2.9015 -0.4902 3.8144
35 1 3.9840 2.1297 2.5484
36 1 2.3209 1.8133 3.2087
37 1 5.2517 3.0138 6.0266
38 1 4.0494 3.9761 5.0114
39 1 2.1568 2.5210 5.8735
40 1 3.3591 1.5587 6.8887
41 1 4.8144 -0.1826 5.3142
42 1 5.7533 0.7136 4.0424
43 1 5.1379 -1.3067 -0.1054
44 1 3.8180 -2.5038 -0.1373
45 1 3.4104 1.4146 -0.7991
46 1 5.0490 0.7403 -1.0910
47 1 4.5662 1.7433 -3.2281
48 1 2.8305 1.3202 -3.1300
49 1 5.0764 1.3277 -7.4763
50 1 4.7624 -1.9702 -2.4413
51 1 3.0563 -2.0204 -2.9684
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071213776.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:33:51
Heat of formation + Delta-G solvation = -10.018114 kcal
Electronic energy + Delta-G solvation = -30843.325940 eV
Core-core repulsion = 26937.696793 eV
Total energy + Delta-G solvation = -3905.629147 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-42.10027 -40.89388 -39.22298 -38.15104 -35.84227 -34.91741 -34.45922 -33.32172
-31.35761 -30.41708 -28.21654 -27.36423 -26.75778 -25.88129 -24.33549 -23.51736
-23.26239 -22.23067 -20.95514 -20.01122 -19.29058 -19.06792 -18.36181 -17.96534
-17.30915 -17.05603 -16.66481 -16.31686 -16.08917 -15.89261 -15.66555 -15.60133
-15.34492 -14.89045 -14.48528 -14.25619 -13.96632 -13.75050 -13.64940 -13.60906
-13.39372 -13.22751 -13.02510 -12.99309 -12.84746 -12.76366 -12.61521 -12.45606
-12.29978 -12.29508 -12.12949 -11.78651 -11.62089 -11.51587 -11.27726 -11.24323
-10.99188 -10.86262 -10.71200 -10.49974 -9.57940 -9.13185 -8.22275 -5.49440
1.25075 1.34211 1.44462 1.52093 1.79200 2.37377 2.50651 2.84137
2.97319 3.16170 3.36980 3.42886 3.46944 3.61788 3.64143 3.72133
3.75439 3.84586 3.92304 4.01415 4.11414 4.15770 4.22497 4.34634
4.38396 4.40662 4.57108 4.60284 4.66349 4.70523 4.71170 4.76255
4.77757 4.80695 4.82833 4.84520 4.89710 5.01169 5.02593 5.02908
5.05452 5.09302 5.22672 5.25475 5.32258 5.34545 5.39545 5.59963
6.05249 6.26748 6.32038 6.68316 7.08385 7.47142 8.03526 8.97408
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.016636 B = 0.003230 C = 0.003196
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1682.656389 B = 8665.644531 C = 8760.191575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.057 3.943
3 H 0.063 0.937
4 C 0.082 3.918
5 N -0.610 5.610
6 C 0.521 3.479
7 O -0.583 6.583
8 C -0.122 4.122
9 C -0.078 4.078
10 C -0.170 4.170
11 C -0.176 4.176
12 C -0.132 4.132
13 C -0.082 4.082
14 C 0.105 3.895
15 C 0.114 3.886
16 C -0.138 4.138
17 C 0.113 3.887
18 N -0.625 5.625
19 C -0.235 4.235
20 H 0.064 0.936
21 C -0.034 4.034
22 N -0.954 5.954
23 Si 0.945 3.055
24 H -0.272 1.272
25 H -0.303 1.303
26 H -0.272 1.272
27 C 0.146 3.854
28 O -0.376 6.376
29 H 0.108 0.892
30 H 0.052 0.948
31 H 0.070 0.930
32 H 0.093 0.907
33 H 0.129 0.871
34 H 0.145 0.855
35 H 0.069 0.931
36 H 0.103 0.897
37 H 0.093 0.907
38 H 0.098 0.902
39 H 0.112 0.888
40 H 0.105 0.895
41 H 0.081 0.919
42 H 0.070 0.930
43 H 0.085 0.915
44 H 0.087 0.913
45 H 0.092 0.908
46 H 0.073 0.927
47 H 0.038 0.962
48 H 0.024 0.976
49 H 0.264 0.736
50 H 0.055 0.945
51 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.067 1.777 30.671 33.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.001 4.001
3 H 0.081 0.919
4 C -0.040 4.040
5 N -0.342 5.342
6 C 0.312 3.688
7 O -0.463 6.463
8 C -0.142 4.142
9 C -0.115 4.115
10 C -0.170 4.170
11 C -0.213 4.213
12 C -0.168 4.168
13 C -0.120 4.120
14 C -0.019 4.019
15 C 0.072 3.928
16 C -0.176 4.176
17 C -0.011 4.011
18 N -0.352 5.352
19 C -0.364 4.364
20 H 0.082 0.918
21 C -0.229 4.229
22 N -0.600 5.600
23 Si 0.774 3.226
24 H -0.198 1.198
25 H -0.231 1.231
26 H -0.198 1.198
27 C 0.021 3.979
28 O -0.295 6.295
29 H 0.127 0.873
30 H 0.071 0.929
31 H 0.089 0.911
32 H 0.111 0.889
33 H 0.147 0.853
34 H 0.163 0.837
35 H 0.088 0.912
36 H 0.121 0.879
37 H 0.112 0.888
38 H 0.116 0.884
39 H 0.130 0.870
40 H 0.123 0.877
41 H 0.100 0.900
42 H 0.089 0.911
43 H 0.103 0.897
44 H 0.106 0.894
45 H 0.111 0.889
46 H 0.092 0.908
47 H 0.056 0.944
48 H 0.041 0.959
49 H 0.073 0.927
50 H 0.073 0.927
51 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -11.496 1.665 30.275 32.427
hybrid contribution 0.244 0.607 -0.992 1.188
sum -11.252 2.273 29.283 31.453
Atomic orbital electron populations
1.21743 0.90069 1.03848 1.03793 1.22935 0.97024 0.95628 0.84476
0.91924 1.22709 0.78057 1.03338 0.99865 1.48273 1.08113 1.62030
1.15774 1.21217 0.86110 0.76344 0.85165 1.90686 1.16879 1.56828
1.81858 1.22718 1.01447 0.98009 0.92068 1.22400 1.02616 0.91852
0.94672 1.22073 1.03650 0.97176 0.94102 1.22892 1.00197 0.94554
1.03683 1.22901 0.97268 1.01584 0.95069 1.22340 0.96724 0.95517
0.97388 1.21882 0.99468 0.97886 0.82633 1.21897 0.81975 0.94684
0.94205 1.23138 1.01685 0.97631 0.95175 1.21944 0.97326 0.89007
0.92838 1.44887 1.78922 1.01734 1.09640 1.18596 1.31074 1.01716
0.84992 0.91796 1.25600 1.00778 1.00617 0.95906 1.69959 1.39603
1.35272 1.15200 0.85961 0.81373 0.79814 0.75480 1.19820 1.23137
1.19787 1.21287 0.98236 0.91018 0.87363 1.87971 1.19088 1.77460
1.45023 0.87297 0.92919 0.91100 0.88886 0.85331 0.83711 0.91204
0.87863 0.88835 0.88359 0.86995 0.87705 0.89990 0.91149 0.89681
0.89437 0.88921 0.90831 0.94365 0.95879 0.92738 0.92696 0.94036
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.93 9.58 71.98 0.69 -1.24 16
2 C 0.06 1.12 3.20 30.69 0.10 1.22 16
3 H 0.06 1.28 6.15 -2.39 -0.01 1.26 16
4 C 0.08 1.19 5.76 86.35 0.50 1.69 16
5 N -0.61 -13.41 2.92 -818.46 -2.39 -15.79 16
6 C 0.52 12.32 7.24 87.66 0.63 12.96 16
7 O -0.58 -19.35 15.38 -3.03 -0.05 -19.39 16
8 C -0.12 -1.78 2.74 -10.94 -0.03 -1.81 16
9 C -0.08 -1.00 7.20 30.98 0.22 -0.77 16
10 C -0.17 -2.14 3.08 -52.37 -0.16 -2.30 16
11 C -0.18 -2.07 10.53 30.45 0.32 -1.75 16
12 C -0.13 -1.11 10.53 30.45 0.32 -0.79 16
13 C -0.08 -1.35 7.42 30.98 0.23 -1.12 16
14 C 0.11 2.93 5.17 86.06 0.44 3.38 16
15 C 0.11 3.71 0.83 -10.21 -0.01 3.71 16
16 C -0.14 -4.84 5.92 31.80 0.19 -4.65 16
17 C 0.11 5.14 4.70 86.88 0.41 5.55 16
18 N -0.62 -31.78 3.21 -692.49 -2.22 -34.00 16
19 C -0.24 -14.14 10.57 84.03 0.89 -13.25 16
20 H 0.06 4.11 8.06 -2.91 -0.02 4.08 16
21 C -0.03 -2.10 5.43 84.86 0.46 -1.64 16
22 N -0.95 -61.88 13.97 21.65 0.30 -61.58 16
23 Si 0.94 48.94 24.27 68.60 1.66 50.60 16
24 H -0.27 -13.31 6.49 99.48 0.65 -12.66 16
25 H -0.30 -15.60 7.11 99.48 0.71 -14.90 16
26 H -0.27 -13.86 6.66 99.48 0.66 -13.19 16
27 C 0.15 6.01 6.61 86.47 0.57 6.58 16
28 O -0.38 -11.40 9.89 -148.97 -1.47 -12.87 16
29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16
31 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16
32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
33 H 0.13 0.95 5.55 -2.39 -0.01 0.93 16
34 H 0.15 1.23 7.55 -2.39 -0.02 1.21 16
35 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16
36 H 0.10 0.76 7.94 -2.39 -0.02 0.75 16
37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16
40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
42 H 0.07 1.58 7.43 -2.38 -0.02 1.57 16
43 H 0.08 2.74 6.89 -2.39 -0.02 2.73 16
44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
45 H 0.09 2.77 5.99 -2.38 -0.01 2.75 16
46 H 0.07 2.67 7.86 -2.39 -0.02 2.65 16
47 H 0.04 1.86 6.65 -2.39 -0.02 1.85 16
48 H 0.02 1.09 5.56 -2.39 -0.01 1.08 16
49 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16
50 H 0.06 2.19 7.79 -2.39 -0.02 2.17 16
51 H 0.04 1.75 8.06 -2.39 -0.02 1.73 16
Total: -1.00 -78.58 385.71 2.42 -76.16
By element:
Atomic # 1 Polarization: 10.33 SS G_CDS: 0.81 Total: 11.14 kcal
Atomic # 6 Polarization: -0.03 SS G_CDS: 5.78 Total: 5.75 kcal
Atomic # 7 Polarization: -107.07 SS G_CDS: -4.31 Total: -111.38 kcal
Atomic # 8 Polarization: -30.75 SS G_CDS: -1.52 Total: -32.27 kcal
Atomic # 14 Polarization: 48.94 SS G_CDS: 1.66 Total: 50.60 kcal
Total: -78.58 2.42 -76.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071213776.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.138 kcal
(2) G-P(sol) polarization free energy of solvation -78.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds