Wall clock time and date at job start Tue Mar 31 2020 18:37:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.51014 * 2 1
4 4 C 1.53295 * 109.51184 * 239.90054 * 2 1 3
5 5 N 1.47162 * 108.37206 * 187.72730 * 4 2 1
6 6 C 1.34777 * 120.98593 * 230.61852 * 5 4 2
7 7 O 1.21610 * 119.99846 * 355.37939 * 6 5 4
8 8 C 1.47097 * 119.99496 * 175.38317 * 6 5 4
9 9 C 1.33003 * 119.99443 * 183.95589 * 8 6 5
10 10 C 1.50702 * 119.99653 * 180.02562 * 9 8 6
11 11 C 1.52996 * 117.49701 * 188.75068 * 10 9 8
12 12 C 1.52997 * 117.50273 * 120.08861 * 10 9 8
13 13 C 1.47155 * 118.02325 * 50.59666 * 5 4 2
14 14 C 1.53256 * 108.40892 * 309.51670 * 13 5 4
15 15 C 1.52984 * 109.39615 * 292.17998 * 14 13 5
16 16 C 1.53203 * 109.34614 * 178.86960 * 15 14 13
17 17 N 1.46933 * 108.77244 * 54.56646 * 16 15 14
18 18 C 1.36945 * 120.63647 * 126.31279 * 17 16 15
19 19 H 1.08001 * 119.99800 * 218.15754 * 18 17 16
20 20 C 1.38810 * 120.00011 * 38.15027 * 18 17 16
21 21 N 1.31624 * 119.99942 * 9.43920 * 20 18 17
22 22 Si 1.86796 * 120.00016 * 189.43418 * 20 18 17
23 23 H 1.48500 * 109.47083 * 359.97438 * 22 20 18
24 24 H 1.48497 * 109.47389 * 120.00395 * 22 20 18
25 25 H 1.48502 * 109.47186 * 240.00517 * 22 20 18
26 26 C 1.46921 * 118.72326 * 306.33261 * 17 16 15
27 27 C 1.52997 * 109.36040 * 172.08880 * 14 13 5
28 28 O 1.42899 * 109.32306 * 52.15210 * 14 13 5
29 29 H 1.09004 * 109.46959 * 180.09916 * 1 2 3
30 30 H 1.09007 * 109.47000 * 60.10133 * 1 2 3
31 31 H 1.08999 * 109.47806 * 300.09623 * 1 2 3
32 32 H 1.09003 * 109.68193 * 307.44605 * 4 2 1
33 33 H 1.08995 * 109.68249 * 67.97007 * 4 2 1
34 34 H 1.08000 * 120.00766 * 3.95506 * 8 6 5
35 35 H 1.07991 * 119.99985 * 0.02562 * 9 8 6
36 36 H 1.09002 * 115.54899 * 334.41326 * 10 9 8
37 37 H 1.09002 * 117.49996 * 359.97438 * 11 10 9
38 38 H 1.08994 * 117.50276 * 145.02192 * 11 10 9
39 39 H 1.08993 * 117.50023 * 214.98119 * 12 10 9
40 40 H 1.09005 * 117.49076 * 359.97438 * 12 10 9
41 41 H 1.08998 * 109.67368 * 69.24789 * 13 5 4
42 42 H 1.08993 * 109.67391 * 189.75550 * 13 5 4
43 43 H 1.09001 * 109.48996 * 298.82637 * 15 14 13
44 44 H 1.08998 * 109.49517 * 58.90631 * 15 14 13
45 45 H 1.09003 * 109.58394 * 294.78457 * 16 15 14
46 46 H 1.08991 * 109.58433 * 174.35602 * 16 15 14
47 47 H 0.96996 * 119.99442 * 179.97438 * 21 20 18
48 48 H 1.09002 * 109.58407 * 293.88630 * 26 17 16
49 49 H 1.08998 * 109.70733 * 173.53457 * 26 17 16
50 50 H 1.09000 * 109.49190 * 301.11573 * 27 14 13
51 51 H 1.08991 * 109.49128 * 61.17497 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0420 -0.7246 -1.2501
5 7 3.5014 -0.8745 -1.1342
6 6 4.3192 -0.4998 -2.1378
7 8 3.8510 -0.1086 -3.1898
8 6 5.7780 -0.5642 -1.9606
9 6 6.5847 -0.1209 -2.9207
10 6 8.0793 -0.1874 -2.7395
11 6 8.9493 0.5199 -3.7805
12 6 8.8781 -1.0090 -3.7533
13 6 4.0412 -1.4453 0.1101
14 6 3.4306 -0.6883 1.2945
15 6 3.9556 0.7486 1.3043
16 6 3.3229 1.5123 2.4720
17 7 3.5734 0.7688 3.7143
18 6 4.1570 1.3837 4.7899
19 1 4.8691 0.8460 5.3984
20 6 3.8334 2.6979 5.0979
21 7 2.8363 3.2928 4.4779
22 14 4.8128 3.6221 6.3924
23 1 5.8727 2.7362 6.9373
24 1 5.4368 4.8215 5.7783
25 1 3.9071 4.0432 7.4914
26 6 3.1863 -0.6469 3.7803
27 6 3.8206 -1.3871 2.5985
28 8 2.0075 -0.6767 1.1653
29 1 -0.3633 -1.0277 0.0018
30 1 -0.3633 0.5123 -0.8909
31 1 -0.3635 0.5153 0.8891
32 1 1.5764 -1.7077 -1.3211
33 1 1.8018 -0.1396 -2.1378
34 1 6.1942 -0.9714 -1.0510
35 1 6.1686 0.2867 -3.8301
36 1 8.4282 -0.1852 -1.7068
37 1 8.4406 1.0329 -4.5967
38 1 9.8707 0.9869 -3.4329
39 1 9.7526 -1.5470 -3.3877
40 1 8.3224 -1.5017 -4.5511
41 1 3.7778 -2.5010 0.1741
42 1 5.1255 -1.3360 0.1238
43 1 5.0394 0.7390 1.4207
44 1 3.6946 1.2377 0.3658
45 1 2.2486 1.6023 2.3104
46 1 3.7682 2.5045 2.5437
47 1 2.6100 4.2110 4.6935
48 1 2.1010 -0.7319 3.7247
49 1 3.5393 -1.0813 4.7155
50 1 3.4634 -2.4168 2.5802
51 1 4.9053 -1.3801 2.7045
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098578260.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:37:26
Heat of formation + Delta-G solvation = -10.037852 kcal
Electronic energy + Delta-G solvation = -30596.141474 eV
Core-core repulsion = 26690.511472 eV
Total energy + Delta-G solvation = -3905.630002 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-40.66191 -38.91494 -37.74809 -36.24550 -34.66307 -33.55305 -32.56171 -31.46500
-30.12247 -29.71345 -27.28604 -26.70882 -24.26532 -23.75682 -22.69773 -22.57387
-21.68911 -20.93668 -20.12875 -19.04945 -18.68010 -17.41294 -16.92369 -16.48540
-15.69843 -15.50147 -15.26052 -14.97516 -14.73967 -14.46028 -14.23420 -13.85006
-13.50943 -13.42494 -13.30224 -13.04144 -12.89512 -12.54562 -12.22446 -11.97381
-11.88140 -11.83363 -11.61648 -11.53183 -11.43315 -11.40924 -11.33657 -10.99167
-10.79740 -10.76140 -10.55853 -10.35451 -10.26029 -10.11308 -9.95191 -9.72384
-9.48939 -9.34182 -9.25692 -8.47072 -8.30699 -6.47385 -5.77565 -3.31593
1.20054 2.90580 3.20144 3.35815 3.43678 3.45500 3.65110 3.92959
4.20156 4.49194 4.55327 4.64585 4.69958 4.80056 4.88428 4.95747
5.12535 5.16682 5.20790 5.29004 5.30644 5.42042 5.46537 5.49489
5.54286 5.59550 5.61243 5.70614 5.76910 5.78565 5.82394 5.82627
6.03199 6.08688 6.14310 6.24983 6.28780 6.32024 6.38608 6.44045
6.48337 6.55107 6.67344 6.85275 7.10681 7.33867 7.38748 7.60720
7.68797 7.82401 8.15302 8.54029 9.25570 9.85141 10.49428 11.30247
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.010012 B = 0.003745 C = 0.003031
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2796.101769 B = 7474.990202 C = 9236.103022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.071 3.929
3 H 0.069 0.931
4 C 0.086 3.914
5 N -0.604 5.604
6 C 0.552 3.448
7 O -0.554 6.554
8 C -0.212 4.212
9 C -0.035 4.035
10 C -0.140 4.140
11 C -0.170 4.170
12 C -0.166 4.166
13 C 0.081 3.919
14 C 0.118 3.882
15 C -0.163 4.163
16 C 0.186 3.814
17 N -0.589 5.589
18 C -0.259 4.259
19 H 0.061 0.939
20 C 0.012 3.988
21 N -0.898 5.898
22 Si 0.900 3.100
23 H -0.277 1.277
24 H -0.289 1.289
25 H -0.289 1.289
26 C 0.151 3.849
27 C -0.118 4.118
28 O -0.355 6.355
29 H 0.061 0.939
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.096 0.904
34 H 0.130 0.870
35 H 0.126 0.874
36 H 0.116 0.884
37 H 0.098 0.902
38 H 0.100 0.900
39 H 0.100 0.900
40 H 0.097 0.903
41 H 0.073 0.927
42 H 0.093 0.907
43 H 0.062 0.938
44 H 0.050 0.950
45 H 0.024 0.976
46 H 0.072 0.928
47 H 0.253 0.747
48 H 0.027 0.973
49 H 0.052 0.948
50 H 0.059 0.941
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.800 -10.002 -14.387 18.457
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.013 3.987
3 H 0.087 0.913
4 C -0.037 4.037
5 N -0.336 5.336
6 C 0.343 3.657
7 O -0.434 6.434
8 C -0.232 4.232
9 C -0.055 4.055
10 C -0.158 4.158
11 C -0.207 4.207
12 C -0.203 4.203
13 C -0.042 4.042
14 C 0.078 3.922
15 C -0.202 4.202
16 C 0.060 3.940
17 N -0.312 5.312
18 C -0.389 4.389
19 H 0.078 0.922
20 C -0.188 4.188
21 N -0.541 5.541
22 Si 0.730 3.270
23 H -0.201 1.201
24 H -0.216 1.216
25 H -0.216 1.216
26 C 0.025 3.975
27 C -0.157 4.157
28 O -0.274 6.274
29 H 0.080 0.920
30 H 0.087 0.913
31 H 0.090 0.910
32 H 0.090 0.910
33 H 0.114 0.886
34 H 0.148 0.852
35 H 0.144 0.856
36 H 0.134 0.866
37 H 0.117 0.883
38 H 0.118 0.882
39 H 0.118 0.882
40 H 0.116 0.884
41 H 0.091 0.909
42 H 0.111 0.889
43 H 0.081 0.919
44 H 0.069 0.931
45 H 0.042 0.958
46 H 0.090 0.910
47 H 0.063 0.937
48 H 0.045 0.955
49 H 0.071 0.929
50 H 0.078 0.922
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 5.348 -9.717 -14.756 18.460
hybrid contribution 0.633 0.669 0.578 1.088
sum 5.981 -9.048 -14.178 17.851
Atomic orbital electron populations
1.21683 0.92587 1.02680 1.02827 1.22400 0.95241 0.96328 0.84754
0.91328 1.22372 0.79555 1.01671 1.00108 1.47977 1.06879 1.62363
1.16416 1.18514 0.87329 0.76930 0.82948 1.90747 1.77640 1.48287
1.26708 1.22591 0.92450 1.06621 1.01583 1.23035 0.92502 0.92053
0.97872 1.21341 0.90499 1.06781 0.97187 1.23024 1.01629 0.94933
1.01154 1.22987 1.01874 0.94165 1.01306 1.22704 0.99876 0.97830
0.83783 1.21705 0.81080 0.95828 0.93625 1.22737 1.01122 0.95438
1.00907 1.20529 0.96673 0.94402 0.82407 1.43901 1.70751 1.05765
1.10781 1.19127 1.17736 0.96094 1.05936 0.92169 1.25344 0.96248
0.99226 0.97988 1.69998 1.27839 1.12499 1.43777 0.86269 0.79514
0.79777 0.81463 1.20147 1.21607 1.21579 1.20804 0.96496 0.86107
0.94111 1.22002 1.00886 0.98295 0.94536 1.88010 1.20546 1.76386
1.42482 0.92001 0.91317 0.91003 0.91044 0.88602 0.85223 0.85576
0.86552 0.88322 0.88186 0.88173 0.88425 0.90872 0.88877 0.91897
0.93138 0.95784 0.90969 0.93690 0.95511 0.92911 0.92247 0.90979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.79 9.57 37.16 0.36 -1.44 16
2 C 0.07 1.08 3.01 -26.58 -0.08 1.00 16
3 H 0.07 1.17 6.29 -51.93 -0.33 0.85 16
4 C 0.09 1.19 5.91 -3.53 -0.02 1.17 16
5 N -0.60 -8.65 2.52 -173.69 -0.44 -9.09 16
6 C 0.55 8.29 7.65 -12.67 -0.10 8.20 16
7 O -0.55 -9.82 15.72 5.27 0.08 -9.74 16
8 C -0.21 -2.58 9.01 -37.81 -0.34 -2.92 16
9 C -0.03 -0.38 9.24 -36.12 -0.33 -0.72 16
10 C -0.14 -1.22 6.00 -91.77 -0.55 -1.77 16
11 C -0.17 -1.27 10.24 -26.69 -0.27 -1.54 16
12 C -0.17 -1.20 10.24 -26.69 -0.27 -1.47 16
13 C 0.08 1.08 5.21 -3.55 -0.02 1.06 16
14 C 0.12 1.93 0.68 -90.50 -0.06 1.86 16
15 C -0.16 -3.06 4.33 -26.63 -0.12 -3.17 16
16 C 0.19 4.41 4.99 -3.70 -0.02 4.39 16
17 N -0.59 -14.61 2.94 -172.31 -0.51 -15.12 16
18 C -0.26 -7.04 9.50 -15.06 -0.14 -7.18 16
19 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16
20 C 0.01 0.33 5.04 -17.43 -0.09 0.24 16
21 N -0.90 -26.13 11.52 55.49 0.64 -25.49 16
22 Si 0.90 21.51 29.56 -169.99 -5.03 16.48 16
23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
26 C 0.15 3.17 6.28 -3.71 -0.02 3.14 16
27 C -0.12 -1.94 5.10 -26.63 -0.14 -2.08 16
28 O -0.36 -6.15 8.64 -35.23 -0.30 -6.46 16
29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.10 1.36 7.12 -51.93 -0.37 0.99 16
34 H 0.13 1.36 5.91 -52.49 -0.31 1.05 16
35 H 0.13 1.48 7.50 -52.49 -0.39 1.09 16
36 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16
37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
42 H 0.09 1.09 5.39 -51.93 -0.28 0.81 16
43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
44 H 0.05 0.94 6.16 -51.93 -0.32 0.62 16
45 H 0.02 0.62 7.83 -51.93 -0.41 0.21 16
46 H 0.07 1.93 6.61 -51.93 -0.34 1.59 16
47 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16
48 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16
49 H 0.05 1.08 7.94 -51.93 -0.41 0.66 16
50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
51 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
LS Contribution 394.77 15.07 5.95 5.95
Total: -1.00 -31.79 394.77 -10.43 -42.22
By element:
Atomic # 1 Polarization: 11.08 SS G_CDS: -8.61 Total: 2.47 kcal
Atomic # 6 Polarization: 0.99 SS G_CDS: -2.22 Total: -1.23 kcal
Atomic # 7 Polarization: -49.39 SS G_CDS: -0.31 Total: -49.70 kcal
Atomic # 8 Polarization: -15.97 SS G_CDS: -0.22 Total: -16.20 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -31.79 -10.43 -42.22 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098578260.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.187 kcal
(2) G-P(sol) polarization free energy of solvation -31.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.34 seconds