Wall clock time and date at job start Tue Mar 31 2020 18:37:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.51014 * 2 1
4 4 C 1.53295 * 109.51184 * 239.90054 * 2 1 3
5 5 N 1.47162 * 108.37206 * 187.72730 * 4 2 1
6 6 C 1.34777 * 120.98593 * 230.61852 * 5 4 2
7 7 O 1.21610 * 119.99846 * 355.37939 * 6 5 4
8 8 C 1.47097 * 119.99496 * 175.38317 * 6 5 4
9 9 C 1.33003 * 119.99443 * 183.95589 * 8 6 5
10 10 C 1.50702 * 119.99653 * 180.02562 * 9 8 6
11 11 C 1.52996 * 117.49701 * 188.75068 * 10 9 8
12 12 C 1.52997 * 117.50273 * 120.08861 * 10 9 8
13 13 C 1.47155 * 118.02325 * 50.59666 * 5 4 2
14 14 C 1.53256 * 108.40892 * 309.51670 * 13 5 4
15 15 C 1.52984 * 109.39615 * 292.17998 * 14 13 5
16 16 C 1.53203 * 109.34614 * 178.86960 * 15 14 13
17 17 N 1.46933 * 108.77244 * 54.56646 * 16 15 14
18 18 C 1.36945 * 120.63647 * 126.31279 * 17 16 15
19 19 H 1.08001 * 119.99800 * 218.15754 * 18 17 16
20 20 C 1.38810 * 120.00011 * 38.15027 * 18 17 16
21 21 N 1.31624 * 119.99942 * 9.43920 * 20 18 17
22 22 Si 1.86796 * 120.00016 * 189.43418 * 20 18 17
23 23 H 1.48500 * 109.47083 * 359.97438 * 22 20 18
24 24 H 1.48497 * 109.47389 * 120.00395 * 22 20 18
25 25 H 1.48502 * 109.47186 * 240.00517 * 22 20 18
26 26 C 1.46921 * 118.72326 * 306.33261 * 17 16 15
27 27 C 1.52997 * 109.36040 * 172.08880 * 14 13 5
28 28 O 1.42899 * 109.32306 * 52.15210 * 14 13 5
29 29 H 1.09004 * 109.46959 * 180.09916 * 1 2 3
30 30 H 1.09007 * 109.47000 * 60.10133 * 1 2 3
31 31 H 1.08999 * 109.47806 * 300.09623 * 1 2 3
32 32 H 1.09003 * 109.68193 * 307.44605 * 4 2 1
33 33 H 1.08995 * 109.68249 * 67.97007 * 4 2 1
34 34 H 1.08000 * 120.00766 * 3.95506 * 8 6 5
35 35 H 1.07991 * 119.99985 * 0.02562 * 9 8 6
36 36 H 1.09002 * 115.54899 * 334.41326 * 10 9 8
37 37 H 1.09002 * 117.49996 * 359.97438 * 11 10 9
38 38 H 1.08994 * 117.50276 * 145.02192 * 11 10 9
39 39 H 1.08993 * 117.50023 * 214.98119 * 12 10 9
40 40 H 1.09005 * 117.49076 * 359.97438 * 12 10 9
41 41 H 1.08998 * 109.67368 * 69.24789 * 13 5 4
42 42 H 1.08993 * 109.67391 * 189.75550 * 13 5 4
43 43 H 1.09001 * 109.48996 * 298.82637 * 15 14 13
44 44 H 1.08998 * 109.49517 * 58.90631 * 15 14 13
45 45 H 1.09003 * 109.58394 * 294.78457 * 16 15 14
46 46 H 1.08991 * 109.58433 * 174.35602 * 16 15 14
47 47 H 0.96996 * 119.99442 * 179.97438 * 21 20 18
48 48 H 1.09002 * 109.58407 * 293.88630 * 26 17 16
49 49 H 1.08998 * 109.70733 * 173.53457 * 26 17 16
50 50 H 1.09000 * 109.49190 * 301.11573 * 27 14 13
51 51 H 1.08991 * 109.49128 * 61.17497 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0420 -0.7246 -1.2501
5 7 3.5014 -0.8745 -1.1342
6 6 4.3192 -0.4998 -2.1378
7 8 3.8510 -0.1086 -3.1898
8 6 5.7780 -0.5642 -1.9606
9 6 6.5847 -0.1209 -2.9207
10 6 8.0793 -0.1874 -2.7395
11 6 8.9493 0.5199 -3.7805
12 6 8.8781 -1.0090 -3.7533
13 6 4.0412 -1.4453 0.1101
14 6 3.4306 -0.6883 1.2945
15 6 3.9556 0.7486 1.3043
16 6 3.3229 1.5123 2.4720
17 7 3.5734 0.7688 3.7143
18 6 4.1570 1.3837 4.7899
19 1 4.8691 0.8460 5.3984
20 6 3.8334 2.6979 5.0979
21 7 2.8363 3.2928 4.4779
22 14 4.8128 3.6221 6.3924
23 1 5.8727 2.7362 6.9373
24 1 5.4368 4.8215 5.7783
25 1 3.9071 4.0432 7.4914
26 6 3.1863 -0.6469 3.7803
27 6 3.8206 -1.3871 2.5985
28 8 2.0075 -0.6767 1.1653
29 1 -0.3633 -1.0277 0.0018
30 1 -0.3633 0.5123 -0.8909
31 1 -0.3635 0.5153 0.8891
32 1 1.5764 -1.7077 -1.3211
33 1 1.8018 -0.1396 -2.1378
34 1 6.1942 -0.9714 -1.0510
35 1 6.1686 0.2867 -3.8301
36 1 8.4282 -0.1852 -1.7068
37 1 8.4406 1.0329 -4.5967
38 1 9.8707 0.9869 -3.4329
39 1 9.7526 -1.5470 -3.3877
40 1 8.3224 -1.5017 -4.5511
41 1 3.7778 -2.5010 0.1741
42 1 5.1255 -1.3360 0.1238
43 1 5.0394 0.7390 1.4207
44 1 3.6946 1.2377 0.3658
45 1 2.2486 1.6023 2.3104
46 1 3.7682 2.5045 2.5437
47 1 2.6100 4.2110 4.6935
48 1 2.1010 -0.7319 3.7247
49 1 3.5393 -1.0813 4.7155
50 1 3.4634 -2.4168 2.5802
51 1 4.9053 -1.3801 2.7045
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001098578260.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:37:25
Heat of formation + Delta-G solvation = -27.520864 kcal
Electronic energy + Delta-G solvation = -30596.899594 eV
Core-core repulsion = 26690.511472 eV
Total energy + Delta-G solvation = -3906.388123 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.88966 -40.14868 -38.46011 -37.83741 -35.86132 -35.12785 -33.58774 -33.06300
-31.77439 -31.23668 -28.60533 -27.96234 -25.95012 -24.75543 -24.14241 -23.23925
-23.20088 -22.16999 -21.12396 -20.50397 -19.75817 -18.86122 -18.40693 -17.58195
-16.98898 -16.83335 -16.47063 -16.29997 -16.10277 -15.69409 -15.52532 -15.20911
-14.99874 -14.84927 -14.68013 -14.47565 -14.06743 -13.63904 -13.39441 -13.29935
-13.08231 -13.02608 -12.88288 -12.80728 -12.68232 -12.61262 -12.53968 -12.37092
-12.19669 -12.12733 -12.00376 -11.94802 -11.75099 -11.48443 -11.35531 -11.23127
-10.80247 -10.77474 -10.57196 -10.14007 -9.49438 -8.50778 -7.86137 -5.44673
0.26823 1.45359 1.46731 1.57580 1.82930 2.17218 2.49866 2.70164
3.01577 3.29225 3.35052 3.57841 3.71836 3.79827 3.87772 3.92010
3.93957 3.95017 4.05419 4.09771 4.14776 4.25903 4.29124 4.42814
4.50673 4.51767 4.62503 4.66093 4.72821 4.73949 4.79051 4.85817
4.98235 4.99037 5.00667 5.03750 5.09202 5.12624 5.16198 5.24115
5.24930 5.25856 5.37161 5.42855 5.45284 5.46825 5.66917 5.71017
6.28141 6.35999 6.45724 7.03341 7.18306 7.85847 8.44762 9.19065
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.010012 B = 0.003745 C = 0.003031
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2796.101769 B = 7474.990202 C = 9236.103022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.071 3.929
3 H 0.039 0.961
4 C 0.091 3.909
5 N -0.607 5.607
6 C 0.546 3.454
7 O -0.591 6.591
8 C -0.229 4.229
9 C -0.021 4.021
10 C -0.154 4.154
11 C -0.170 4.170
12 C -0.155 4.155
13 C 0.089 3.911
14 C 0.117 3.883
15 C -0.146 4.146
16 C 0.200 3.800
17 N -0.606 5.606
18 C -0.266 4.266
19 H 0.067 0.933
20 C -0.044 4.044
21 N -0.935 5.935
22 Si 0.967 3.033
23 H -0.261 1.261
24 H -0.292 1.292
25 H -0.292 1.292
26 C 0.148 3.852
27 C -0.107 4.107
28 O -0.373 6.373
29 H 0.077 0.923
30 H 0.089 0.911
31 H 0.050 0.950
32 H 0.091 0.909
33 H 0.090 0.910
34 H 0.151 0.849
35 H 0.113 0.887
36 H 0.125 0.875
37 H 0.096 0.904
38 H 0.112 0.888
39 H 0.117 0.883
40 H 0.097 0.903
41 H 0.099 0.901
42 H 0.115 0.885
43 H 0.069 0.931
44 H 0.047 0.953
45 H -0.010 1.010
46 H 0.032 0.968
47 H 0.248 0.752
48 H 0.006 0.994
49 H 0.056 0.944
50 H 0.092 0.908
51 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.990 -12.333 -14.871 20.907
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.013 3.987
3 H 0.057 0.943
4 C -0.031 4.031
5 N -0.338 5.338
6 C 0.339 3.661
7 O -0.474 6.474
8 C -0.249 4.249
9 C -0.041 4.041
10 C -0.172 4.172
11 C -0.207 4.207
12 C -0.192 4.192
13 C -0.033 4.033
14 C 0.077 3.923
15 C -0.185 4.185
16 C 0.074 3.926
17 N -0.330 5.330
18 C -0.397 4.397
19 H 0.084 0.916
20 C -0.241 4.241
21 N -0.580 5.580
22 Si 0.794 3.206
23 H -0.185 1.185
24 H -0.218 1.218
25 H -0.219 1.219
26 C 0.022 3.978
27 C -0.146 4.146
28 O -0.292 6.292
29 H 0.096 0.904
30 H 0.108 0.892
31 H 0.069 0.931
32 H 0.109 0.891
33 H 0.108 0.892
34 H 0.169 0.831
35 H 0.131 0.869
36 H 0.143 0.857
37 H 0.115 0.885
38 H 0.131 0.869
39 H 0.135 0.865
40 H 0.115 0.885
41 H 0.117 0.883
42 H 0.133 0.867
43 H 0.088 0.912
44 H 0.066 0.934
45 H 0.008 0.992
46 H 0.050 0.950
47 H 0.057 0.943
48 H 0.024 0.976
49 H 0.075 0.925
50 H 0.110 0.890
51 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 7.550 -12.090 -15.231 20.861
hybrid contribution -0.087 1.420 0.708 1.589
sum 7.463 -10.670 -14.523 19.506
Atomic orbital electron populations
1.21674 0.90995 1.03723 1.02840 1.22447 0.96545 0.94807 0.84925
0.94300 1.22304 0.79792 1.02275 0.98761 1.48071 1.06961 1.62127
1.16631 1.19009 0.88539 0.76107 0.82481 1.90723 1.78442 1.50024
1.28167 1.22591 0.90734 1.08552 1.03013 1.23181 0.93949 0.90121
0.96835 1.21382 0.88981 1.08693 0.98180 1.23131 1.01666 0.95443
1.00478 1.23082 1.01737 0.94080 1.00279 1.22696 1.00806 0.98284
0.81505 1.21728 0.80981 0.94210 0.95375 1.22487 1.00954 0.96940
0.98152 1.20172 0.94593 0.93466 0.84356 1.44162 1.70901 1.07310
1.10605 1.19502 1.17532 0.96419 1.06220 0.91593 1.26130 0.97373
1.00317 1.00242 1.70175 1.29783 1.12457 1.45592 0.85223 0.78279
0.78361 0.78697 1.18453 1.21845 1.21939 1.20915 0.95716 0.84465
0.96669 1.21896 1.01492 0.99126 0.92064 1.87993 1.21128 1.76442
1.43651 0.90356 0.89244 0.93070 0.89122 0.89208 0.83148 0.86914
0.85717 0.88516 0.86944 0.86487 0.88458 0.88334 0.86738 0.91231
0.93427 0.99203 0.94981 0.94272 0.97561 0.92538 0.88979 0.89403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.43 9.57 71.98 0.69 -2.74 16
2 C 0.07 2.17 3.01 30.69 0.09 2.26 16
3 H 0.04 1.40 6.29 -2.39 -0.02 1.39 16
4 C 0.09 2.43 5.91 86.35 0.51 2.94 16
5 N -0.61 -16.29 2.52 -821.69 -2.07 -18.37 16
6 C 0.55 15.80 7.65 86.57 0.66 16.46 16
7 O -0.59 -20.92 15.72 -4.06 -0.06 -20.99 16
8 C -0.23 -5.14 9.01 23.43 0.21 -4.93 16
9 C -0.02 -0.43 9.24 24.52 0.23 -0.20 16
10 C -0.15 -2.33 6.00 -11.54 -0.07 -2.40 16
11 C -0.17 -2.15 10.24 30.62 0.31 -1.84 16
12 C -0.15 -1.81 10.24 30.62 0.31 -1.49 16
13 C 0.09 2.09 5.21 86.34 0.45 2.54 16
14 C 0.12 3.63 0.68 -10.71 -0.01 3.62 16
15 C -0.15 -5.50 4.33 30.66 0.13 -5.36 16
16 C 0.20 9.92 4.99 86.36 0.43 10.35 16
17 N -0.61 -30.58 2.94 -699.07 -2.06 -32.63 16
18 C -0.27 -14.62 9.50 84.03 0.80 -13.82 16
19 H 0.07 3.49 7.85 -2.91 -0.02 3.47 16
20 C -0.04 -2.51 5.04 84.86 0.43 -2.08 16
21 N -0.94 -56.71 11.52 21.65 0.25 -56.46 16
22 Si 0.97 44.88 29.56 68.60 2.03 46.90 16
23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16
24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16
25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
26 C 0.15 6.11 6.28 86.36 0.54 6.65 16
27 C -0.11 -3.24 5.10 30.66 0.16 -3.08 16
28 O -0.37 -12.67 8.64 -148.98 -1.29 -13.96 16
29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
30 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16
31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16
33 H 0.09 2.52 7.12 -2.39 -0.02 2.50 16
34 H 0.15 2.67 5.91 -2.91 -0.02 2.65 16
35 H 0.11 2.61 7.50 -2.92 -0.02 2.59 16
36 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16
37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16
38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16
40 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16
41 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16
42 H 0.11 2.21 5.39 -2.39 -0.01 2.20 16
43 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
44 H 0.05 1.81 6.16 -2.39 -0.01 1.79 16
45 H -0.01 -0.56 7.83 -2.39 -0.02 -0.58 16
46 H 0.03 1.81 6.61 -2.39 -0.02 1.79 16
47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
48 H 0.01 0.29 7.82 -2.39 -0.02 0.27 16
49 H 0.06 2.25 7.94 -2.39 -0.02 2.23 16
50 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16
51 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16
Total: -1.00 -72.14 394.77 3.58 -68.56
By element:
Atomic # 1 Polarization: 19.18 SS G_CDS: 0.90 Total: 20.08 kcal
Atomic # 6 Polarization: 0.98 SS G_CDS: 5.88 Total: 6.86 kcal
Atomic # 7 Polarization: -103.58 SS G_CDS: -3.88 Total: -107.46 kcal
Atomic # 8 Polarization: -33.60 SS G_CDS: -1.35 Total: -34.95 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal
Total: -72.14 3.58 -68.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098578260.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.038 kcal
(2) G-P(sol) polarization free energy of solvation -72.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.521 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds