Wall clock time and date at job start Tue Mar 31 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.50729 * 2 1 4 4 C 1.53287 * 109.51537 * 120.09926 * 2 1 3 5 5 N 1.47154 * 108.38329 * 172.26161 * 4 2 1 6 6 C 1.34774 * 120.99098 * 129.43247 * 5 4 2 7 7 O 1.21611 * 119.99739 * 356.51832 * 6 5 4 8 8 C 1.47102 * 119.99856 * 176.52407 * 6 5 4 9 9 C 1.32997 * 119.99715 * 174.46500 * 8 6 5 10 10 C 1.50700 * 119.99963 * 353.55068 * 9 8 6 11 11 C 1.53001 * 117.49685 * 177.94656 * 10 9 8 12 12 C 1.52996 * 60.00301 * 252.51186 * 11 10 9 13 13 C 1.47157 * 118.01853 * 309.41591 * 5 4 2 14 14 C 1.53251 * 108.40699 * 50.48583 * 13 5 4 15 15 C 1.52990 * 109.36481 * 187.88478 * 14 13 5 16 16 C 1.53187 * 109.35725 * 178.87754 * 15 14 13 17 17 N 1.46925 * 108.77374 * 54.58029 * 16 15 14 18 18 C 1.36931 * 120.64829 * 126.33728 * 17 16 15 19 19 H 1.08007 * 120.00683 * 204.87002 * 18 17 16 20 20 C 1.38818 * 119.99830 * 24.86779 * 18 17 16 21 21 N 1.31615 * 119.99850 * 21.73583 * 20 18 17 22 22 Si 1.86803 * 120.00302 * 201.73559 * 20 18 17 23 23 H 1.48501 * 109.47141 * 89.99805 * 22 20 18 24 24 H 1.48497 * 109.47110 * 210.00166 * 22 20 18 25 25 H 1.48502 * 109.46945 * 329.99921 * 22 20 18 26 26 C 1.46930 * 118.71021 * 306.31876 * 17 16 15 27 27 C 1.52987 * 109.38378 * 67.80157 * 14 13 5 28 28 O 1.42895 * 109.32377 * 307.82975 * 14 13 5 29 29 H 1.08996 * 109.47499 * 299.89355 * 1 2 3 30 30 H 1.09002 * 109.46768 * 179.90150 * 1 2 3 31 31 H 1.09000 * 109.47575 * 59.90189 * 1 2 3 32 32 H 1.08998 * 109.68168 * 291.98881 * 4 2 1 33 33 H 1.09008 * 109.68085 * 52.50210 * 4 2 1 34 34 H 1.07996 * 120.00229 * 354.46761 * 8 6 5 35 35 H 1.07997 * 120.00010 * 173.55376 * 9 8 6 36 36 H 1.08994 * 115.55406 * 323.65967 * 10 9 8 37 37 H 1.09005 * 117.50022 * 0.02562 * 11 10 9 38 38 H 1.09000 * 117.49674 * 145.01931 * 11 10 9 39 39 H 1.08999 * 117.50332 * 252.51539 * 12 11 10 40 40 H 1.09001 * 117.49833 * 107.48643 * 12 11 10 41 41 H 1.08997 * 109.67804 * 170.22286 * 13 5 4 42 42 H 1.09008 * 109.67352 * 290.72508 * 13 5 4 43 43 H 1.09009 * 109.48691 * 298.84076 * 15 14 13 44 44 H 1.08996 * 109.48932 * 58.90575 * 15 14 13 45 45 H 1.09000 * 109.58250 * 294.79307 * 16 15 14 46 46 H 1.09004 * 109.58646 * 174.37193 * 16 15 14 47 47 H 0.97003 * 120.00122 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.58251 * 293.88256 * 26 17 16 49 49 H 1.09001 * 109.58382 * 173.46163 * 26 17 16 50 50 H 1.08995 * 109.49134 * 301.06165 * 27 14 13 51 51 H 1.09003 * 109.49088 * 61.11458 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5013 -0.8748 1.1342 6 6 4.3192 -0.5011 2.1381 7 8 3.8593 0.0264 3.1327 8 6 5.7681 -0.7313 2.0307 9 6 6.5869 -0.2649 2.9693 10 6 6.0510 0.6213 4.0640 11 6 7.0334 1.0862 5.1410 12 6 5.9743 0.0337 5.4747 13 6 4.0409 -1.4455 -0.1102 14 6 3.4305 -0.6882 -1.2945 15 6 3.8208 -1.3864 -2.5986 16 6 3.1875 -0.6455 -3.7804 17 7 3.5753 0.7700 -3.7138 18 6 4.1592 1.3852 -4.7888 19 1 4.7906 2.2486 -4.6398 20 6 3.9394 0.8990 -6.0704 21 7 2.8811 0.1576 -6.3204 22 14 5.1458 1.2969 -7.4400 23 1 6.1986 0.2509 -7.4917 24 1 4.4252 1.3386 -8.7377 25 1 5.7726 2.6176 -7.1793 26 6 3.3243 1.5129 -2.4712 27 6 3.9559 0.7487 -1.3034 28 8 2.0075 -0.6766 -1.1655 29 1 -0.3634 0.5121 0.8909 30 1 -0.3633 -1.0277 -0.0018 31 1 -0.3634 0.5153 -0.8891 32 1 1.8025 -0.1391 2.1376 33 1 1.5758 -1.7073 1.3215 34 1 6.1670 -1.2789 1.1896 35 1 7.6357 -0.5213 2.9469 36 1 5.2661 1.3158 3.7648 37 1 8.0674 0.7513 5.0574 38 1 6.8949 2.0869 5.5503 39 1 5.1390 0.3419 6.1035 40 1 6.3113 -0.9939 5.6108 41 1 5.1253 -1.3362 -0.1242 42 1 3.7776 -2.5014 -0.1741 43 1 4.9057 -1.3795 -2.7042 44 1 3.4633 -2.4159 -2.5809 45 1 2.1021 -0.7300 -3.7253 46 1 3.5427 -1.0782 -4.7157 47 1 2.7273 -0.1819 -7.2160 48 1 2.2500 1.6034 -2.3104 49 1 3.7700 2.5051 -2.5423 50 1 3.6942 1.2374 -0.3650 51 1 5.0397 0.7389 -1.4186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098578262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:35 Heat of formation + Delta-G solvation = 1.145349 kcal Electronic energy + Delta-G solvation = -30785.648830 eV Core-core repulsion = 26880.503767 eV Total energy + Delta-G solvation = -3905.145062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.72444 -39.12188 -37.36985 -36.25576 -34.67056 -33.55113 -32.55048 -31.58852 -30.16203 -29.62133 -27.30855 -26.70512 -24.21416 -23.58036 -22.63828 -22.49345 -21.69396 -21.33130 -20.27627 -19.00731 -18.50477 -17.41651 -16.93670 -16.26075 -15.61844 -15.54691 -15.20101 -14.99173 -14.78263 -14.35221 -14.17708 -13.70150 -13.56555 -13.43694 -13.31824 -13.15392 -13.01955 -12.58739 -12.27049 -11.97074 -11.78714 -11.77749 -11.70989 -11.56485 -11.46809 -11.33749 -11.17937 -11.04066 -10.78966 -10.66436 -10.50979 -10.32486 -10.26308 -9.94773 -9.81990 -9.63691 -9.53257 -9.31050 -9.23297 -8.42290 -8.31573 -6.68540 -5.77454 -3.14505 1.20222 2.92218 3.19598 3.38735 3.46260 3.47307 3.81915 3.90662 4.38086 4.51181 4.52307 4.77211 4.78383 4.89865 4.97189 5.03861 5.12666 5.19071 5.21720 5.24509 5.37319 5.43634 5.45236 5.46482 5.55509 5.61982 5.67063 5.69950 5.77456 5.79246 5.94116 5.97267 6.03925 6.06355 6.10099 6.19867 6.27563 6.30072 6.32838 6.46164 6.50818 6.54637 6.65025 6.74547 6.99889 7.37396 7.40105 7.62829 7.72335 7.82067 8.16536 8.44643 9.22927 9.87878 10.44637 11.31073 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003252 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.683010 B = 8607.929852 C = 9749.591030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.065 0.935 4 C 0.086 3.914 5 N -0.607 5.607 6 C 0.548 3.452 7 O -0.541 6.541 8 C -0.217 4.217 9 C -0.035 4.035 10 C -0.122 4.122 11 C -0.188 4.188 12 C -0.156 4.156 13 C 0.082 3.918 14 C 0.119 3.881 15 C -0.126 4.126 16 C 0.177 3.823 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.153 3.847 27 C -0.154 4.154 28 O -0.353 6.353 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.027 0.973 46 H 0.087 0.913 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.050 0.950 50 H 0.052 0.948 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -3.876 19.313 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.012 3.988 3 H 0.083 0.917 4 C -0.037 4.037 5 N -0.340 5.340 6 C 0.339 3.661 7 O -0.421 6.421 8 C -0.238 4.238 9 C -0.055 4.055 10 C -0.140 4.140 11 C -0.225 4.225 12 C -0.193 4.193 13 C -0.041 4.041 14 C 0.079 3.921 15 C -0.166 4.166 16 C 0.051 3.949 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.542 5.542 22 Si 0.728 3.272 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.026 3.974 27 C -0.193 4.193 28 O -0.272 6.272 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.302 -3.740 19.525 20.153 hybrid contribution 0.839 0.114 -0.705 1.102 sum 4.141 -3.626 18.820 19.609 Atomic orbital electron populations 1.21686 0.92644 1.02875 1.02641 1.22390 0.95228 0.96107 0.85083 0.91681 1.22337 0.79740 1.01624 1.00016 1.48043 1.06816 1.62723 1.16378 1.18574 0.87214 0.77963 0.82313 1.90728 1.77349 1.43292 1.30685 1.22697 0.92908 1.06532 1.01629 1.23114 0.98629 0.91419 0.92296 1.21458 1.01466 1.02030 0.89032 1.23091 0.95642 0.99634 1.04147 1.22776 1.01060 0.98198 0.97225 1.22695 0.99753 0.98034 0.83664 1.21726 0.80918 0.95326 0.94160 1.22193 1.00977 0.98686 0.94703 1.20687 0.96292 0.83193 0.94748 1.44081 1.70985 1.06092 1.10150 1.19198 1.21380 1.12791 0.84831 0.91635 1.24933 0.96782 1.00966 0.97032 1.70095 1.24649 1.39129 1.20367 0.86353 0.81069 0.78081 0.81702 1.21501 1.21876 1.20518 1.20747 0.96565 0.93852 0.86219 1.22536 1.01194 0.95869 0.99736 1.88067 1.20614 1.76367 1.42182 0.91362 0.91861 0.91134 0.88583 0.91094 0.85053 0.85589 0.85266 0.88946 0.88706 0.88649 0.89165 0.88957 0.90837 0.91185 0.92308 0.95444 0.89497 0.93676 0.96111 0.93138 0.92928 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 37.16 0.36 -1.34 16 2 C 0.07 1.01 3.01 -26.58 -0.08 0.93 16 3 H 0.07 1.00 6.29 -51.93 -0.33 0.68 16 4 C 0.09 1.12 5.94 -3.54 -0.02 1.10 16 5 N -0.61 -8.17 2.52 -173.69 -0.44 -8.60 16 6 C 0.55 7.54 7.58 -12.67 -0.10 7.45 16 7 O -0.54 -8.50 12.82 5.27 0.07 -8.43 16 8 C -0.22 -2.42 9.26 -37.80 -0.35 -2.77 16 9 C -0.03 -0.35 9.74 -36.13 -0.35 -0.70 16 10 C -0.12 -1.33 4.22 -91.77 -0.39 -1.71 16 11 C -0.19 -1.62 10.23 -26.73 -0.27 -1.89 16 12 C -0.16 -1.50 10.23 -26.73 -0.27 -1.78 16 13 C 0.08 1.07 5.16 -3.55 -0.02 1.05 16 14 C 0.12 1.93 0.68 -90.50 -0.06 1.87 16 15 C -0.13 -2.28 5.10 -26.64 -0.14 -2.42 16 16 C 0.18 4.15 5.13 -3.71 -0.02 4.13 16 17 N -0.59 -14.64 3.00 -172.31 -0.52 -15.15 16 18 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 19 H 0.07 1.76 7.90 -52.48 -0.41 1.35 16 20 C 0.00 0.04 4.82 -17.43 -0.08 -0.04 16 21 N -0.90 -25.95 11.27 55.49 0.63 -25.33 16 22 Si 0.90 21.49 29.61 -169.99 -5.03 16.45 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 3.24 6.28 -3.71 -0.02 3.22 16 27 C -0.15 -2.67 4.33 -26.64 -0.12 -2.78 16 28 O -0.35 -6.07 8.65 -35.23 -0.30 -6.38 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.26 7.07 -51.93 -0.37 0.89 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.13 1.23 6.10 -52.49 -0.32 0.91 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.72 6.43 -51.93 -0.33 1.38 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.06 5.53 -51.93 -0.29 0.78 16 42 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.03 0.70 7.83 -51.93 -0.41 0.30 16 46 H 0.09 2.28 5.96 -51.93 -0.31 1.97 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.46 7.83 -51.93 -0.41 0.06 16 49 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 50 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -30.95 389.12 -10.35 -41.30 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.53 Total: 3.00 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.08 Total: -2.72 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.33 Total: -49.09 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.24 Total: -14.81 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.95 -10.35 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098578262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds