Wall clock time and date at job start Tue Mar 31 2020 18:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.50729 * 2 1 4 4 C 1.53287 * 109.51537 * 120.09926 * 2 1 3 5 5 N 1.47154 * 108.38329 * 172.26161 * 4 2 1 6 6 C 1.34774 * 120.99098 * 129.43247 * 5 4 2 7 7 O 1.21611 * 119.99739 * 356.51832 * 6 5 4 8 8 C 1.47102 * 119.99856 * 176.52407 * 6 5 4 9 9 C 1.32997 * 119.99715 * 174.46500 * 8 6 5 10 10 C 1.50700 * 119.99963 * 353.55068 * 9 8 6 11 11 C 1.53001 * 117.49685 * 177.94656 * 10 9 8 12 12 C 1.52996 * 60.00301 * 252.51186 * 11 10 9 13 13 C 1.47157 * 118.01853 * 309.41591 * 5 4 2 14 14 C 1.53251 * 108.40699 * 50.48583 * 13 5 4 15 15 C 1.52990 * 109.36481 * 187.88478 * 14 13 5 16 16 C 1.53187 * 109.35725 * 178.87754 * 15 14 13 17 17 N 1.46925 * 108.77374 * 54.58029 * 16 15 14 18 18 C 1.36931 * 120.64829 * 126.33728 * 17 16 15 19 19 H 1.08007 * 120.00683 * 204.87002 * 18 17 16 20 20 C 1.38818 * 119.99830 * 24.86779 * 18 17 16 21 21 N 1.31615 * 119.99850 * 21.73583 * 20 18 17 22 22 Si 1.86803 * 120.00302 * 201.73559 * 20 18 17 23 23 H 1.48501 * 109.47141 * 89.99805 * 22 20 18 24 24 H 1.48497 * 109.47110 * 210.00166 * 22 20 18 25 25 H 1.48502 * 109.46945 * 329.99921 * 22 20 18 26 26 C 1.46930 * 118.71021 * 306.31876 * 17 16 15 27 27 C 1.52987 * 109.38378 * 67.80157 * 14 13 5 28 28 O 1.42895 * 109.32377 * 307.82975 * 14 13 5 29 29 H 1.08996 * 109.47499 * 299.89355 * 1 2 3 30 30 H 1.09002 * 109.46768 * 179.90150 * 1 2 3 31 31 H 1.09000 * 109.47575 * 59.90189 * 1 2 3 32 32 H 1.08998 * 109.68168 * 291.98881 * 4 2 1 33 33 H 1.09008 * 109.68085 * 52.50210 * 4 2 1 34 34 H 1.07996 * 120.00229 * 354.46761 * 8 6 5 35 35 H 1.07997 * 120.00010 * 173.55376 * 9 8 6 36 36 H 1.08994 * 115.55406 * 323.65967 * 10 9 8 37 37 H 1.09005 * 117.50022 * 0.02562 * 11 10 9 38 38 H 1.09000 * 117.49674 * 145.01931 * 11 10 9 39 39 H 1.08999 * 117.50332 * 252.51539 * 12 11 10 40 40 H 1.09001 * 117.49833 * 107.48643 * 12 11 10 41 41 H 1.08997 * 109.67804 * 170.22286 * 13 5 4 42 42 H 1.09008 * 109.67352 * 290.72508 * 13 5 4 43 43 H 1.09009 * 109.48691 * 298.84076 * 15 14 13 44 44 H 1.08996 * 109.48932 * 58.90575 * 15 14 13 45 45 H 1.09000 * 109.58250 * 294.79307 * 16 15 14 46 46 H 1.09004 * 109.58646 * 174.37193 * 16 15 14 47 47 H 0.97003 * 120.00122 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.58251 * 293.88256 * 26 17 16 49 49 H 1.09001 * 109.58382 * 173.46163 * 26 17 16 50 50 H 1.08995 * 109.49134 * 301.06165 * 27 14 13 51 51 H 1.09003 * 109.49088 * 61.11458 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5013 -0.8748 1.1342 6 6 4.3192 -0.5011 2.1381 7 8 3.8593 0.0264 3.1327 8 6 5.7681 -0.7313 2.0307 9 6 6.5869 -0.2649 2.9693 10 6 6.0510 0.6213 4.0640 11 6 7.0334 1.0862 5.1410 12 6 5.9743 0.0337 5.4747 13 6 4.0409 -1.4455 -0.1102 14 6 3.4305 -0.6882 -1.2945 15 6 3.8208 -1.3864 -2.5986 16 6 3.1875 -0.6455 -3.7804 17 7 3.5753 0.7700 -3.7138 18 6 4.1592 1.3852 -4.7888 19 1 4.7906 2.2486 -4.6398 20 6 3.9394 0.8990 -6.0704 21 7 2.8811 0.1576 -6.3204 22 14 5.1458 1.2969 -7.4400 23 1 6.1986 0.2509 -7.4917 24 1 4.4252 1.3386 -8.7377 25 1 5.7726 2.6176 -7.1793 26 6 3.3243 1.5129 -2.4712 27 6 3.9559 0.7487 -1.3034 28 8 2.0075 -0.6766 -1.1655 29 1 -0.3634 0.5121 0.8909 30 1 -0.3633 -1.0277 -0.0018 31 1 -0.3634 0.5153 -0.8891 32 1 1.8025 -0.1391 2.1376 33 1 1.5758 -1.7073 1.3215 34 1 6.1670 -1.2789 1.1896 35 1 7.6357 -0.5213 2.9469 36 1 5.2661 1.3158 3.7648 37 1 8.0674 0.7513 5.0574 38 1 6.8949 2.0869 5.5503 39 1 5.1390 0.3419 6.1035 40 1 6.3113 -0.9939 5.6108 41 1 5.1253 -1.3362 -0.1242 42 1 3.7776 -2.5014 -0.1741 43 1 4.9057 -1.3795 -2.7042 44 1 3.4633 -2.4159 -2.5809 45 1 2.1021 -0.7300 -3.7253 46 1 3.5427 -1.0782 -4.7157 47 1 2.7273 -0.1819 -7.2160 48 1 2.2500 1.6034 -2.3104 49 1 3.7700 2.5051 -2.5423 50 1 3.6942 1.2374 -0.3650 51 1 5.0397 0.7389 -1.4186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098578262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:33 Heat of formation + Delta-G solvation = -15.500607 kcal Electronic energy + Delta-G solvation = -30786.370652 eV Core-core repulsion = 26880.503767 eV Total energy + Delta-G solvation = -3905.866885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.87928 -40.25214 -38.29994 -37.74675 -35.78680 -35.07792 -33.55598 -33.14005 -31.67657 -31.23094 -28.61195 -27.88541 -25.92359 -24.49817 -24.18291 -23.18123 -23.15094 -22.42575 -21.50481 -20.42178 -19.50963 -18.84836 -18.33706 -17.31168 -16.97810 -16.72454 -16.56960 -16.19894 -16.00371 -15.63369 -15.51718 -15.15547 -14.95320 -14.90048 -14.51571 -14.39462 -14.14620 -13.78921 -13.39615 -13.24376 -13.15740 -13.06432 -12.85920 -12.82896 -12.61886 -12.60242 -12.58900 -12.39557 -12.20226 -12.05752 -11.94783 -11.83038 -11.72586 -11.41770 -11.31357 -11.05811 -10.76902 -10.54714 -10.48308 -10.05627 -9.42931 -8.70361 -7.86178 -5.26798 0.38096 1.48627 1.49889 1.58866 1.91628 2.25117 2.53099 2.70970 3.08685 3.26735 3.52323 3.58242 3.68929 3.76572 3.85001 3.89650 3.99744 4.05987 4.08751 4.17963 4.22859 4.31154 4.40324 4.42051 4.51547 4.55264 4.63554 4.68573 4.69745 4.75427 4.79092 4.84705 4.91642 4.99286 5.00962 5.04241 5.08799 5.13595 5.19237 5.25135 5.27231 5.29880 5.32359 5.43181 5.48338 5.57349 5.66600 5.81521 6.37772 6.38137 6.39895 7.15889 7.16194 7.87998 8.40392 9.20375 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003252 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.683010 B = 8607.929852 C = 9749.591030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.070 3.930 3 H 0.049 0.951 4 C 0.091 3.909 5 N -0.610 5.610 6 C 0.541 3.459 7 O -0.568 6.568 8 C -0.235 4.235 9 C -0.021 4.021 10 C -0.145 4.145 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.091 3.909 14 C 0.119 3.881 15 C -0.115 4.115 16 C 0.186 3.814 17 N -0.606 5.606 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.050 4.050 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.271 1.271 26 C 0.152 3.848 27 C -0.138 4.138 28 O -0.377 6.377 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.077 0.923 45 H -0.008 1.008 46 H 0.055 0.945 47 H 0.250 0.750 48 H 0.004 0.996 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -4.737 21.002 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.067 0.933 4 C -0.031 4.031 5 N -0.342 5.342 6 C 0.334 3.666 7 O -0.450 6.450 8 C -0.255 4.255 9 C -0.040 4.040 10 C -0.163 4.163 11 C -0.206 4.206 12 C -0.197 4.197 13 C -0.031 4.031 14 C 0.079 3.921 15 C -0.154 4.154 16 C 0.060 3.940 17 N -0.329 5.329 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.793 3.207 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.195 1.195 26 C 0.026 3.974 27 C -0.177 4.177 28 O -0.297 6.297 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.011 0.989 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.022 0.978 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.749 -4.595 21.242 22.481 hybrid contribution -0.013 0.489 -1.171 1.269 sum 5.736 -4.106 20.072 21.275 Atomic orbital electron populations 1.21688 0.91255 1.03495 1.02950 1.22494 0.96371 0.95126 0.84854 0.93345 1.22253 0.80038 1.01937 0.98910 1.48106 1.06842 1.62768 1.16484 1.19095 0.88392 0.77254 0.81840 1.90725 1.78048 1.44460 1.31723 1.22788 0.91285 1.08207 1.03263 1.23446 1.00024 0.89638 0.90878 1.21393 1.02156 1.02630 0.90128 1.23181 0.96144 0.99513 1.01717 1.22818 1.01516 0.99150 0.96205 1.22593 1.00713 0.98031 0.81787 1.21669 0.81000 0.94648 0.94781 1.22002 1.01225 0.98988 0.93197 1.20433 0.94437 0.83266 0.95842 1.44339 1.71021 1.06916 1.10656 1.19514 1.21176 1.12860 0.85822 0.91638 1.25694 0.98198 1.01387 0.99234 1.70251 1.26373 1.40630 1.20574 0.85304 0.78781 0.78259 0.78340 1.20801 1.22478 1.19539 1.20805 0.95887 0.94166 0.86534 1.22331 1.01144 0.96333 0.97897 1.88047 1.21142 1.76754 1.43752 0.88945 0.91057 0.92902 0.88779 0.89947 0.82874 0.82258 0.88319 0.86816 0.88397 0.89523 0.88176 0.86689 0.89283 0.89937 0.90420 0.98943 0.92652 0.94115 0.97834 0.93583 0.92095 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.57 71.98 0.69 -2.56 16 2 C 0.07 1.97 3.01 30.69 0.09 2.06 16 3 H 0.05 1.51 6.29 -2.39 -0.02 1.50 16 4 C 0.09 2.27 5.94 86.35 0.51 2.78 16 5 N -0.61 -15.18 2.52 -821.70 -2.07 -17.25 16 6 C 0.54 13.94 7.58 86.57 0.66 14.60 16 7 O -0.57 -17.50 12.82 -4.07 -0.05 -17.55 16 8 C -0.24 -4.54 9.26 23.43 0.22 -4.33 16 9 C -0.02 -0.35 9.74 24.52 0.24 -0.11 16 10 C -0.15 -2.91 4.22 -11.54 -0.05 -2.96 16 11 C -0.17 -2.47 10.23 30.59 0.31 -2.15 16 12 C -0.16 -2.82 10.23 30.59 0.31 -2.51 16 13 C 0.09 2.13 5.16 86.34 0.45 2.58 16 14 C 0.12 3.72 0.68 -10.72 -0.01 3.71 16 15 C -0.11 -4.04 5.10 30.65 0.16 -3.88 16 16 C 0.19 8.97 5.13 86.36 0.44 9.41 16 17 N -0.61 -30.70 3.00 -699.08 -2.10 -32.80 16 18 C -0.26 -14.58 9.59 84.04 0.81 -13.78 16 19 H 0.07 3.55 7.90 -2.91 -0.02 3.53 16 20 C -0.05 -2.77 4.82 84.86 0.41 -2.36 16 21 N -0.93 -55.59 11.27 21.65 0.24 -55.35 16 22 Si 0.96 44.66 29.61 68.60 2.03 46.69 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 C 0.15 6.56 6.28 86.36 0.54 7.11 16 27 C -0.14 -4.66 4.33 30.65 0.13 -4.52 16 28 O -0.38 -12.87 8.65 -148.98 -1.29 -14.16 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.39 7.07 -2.39 -0.02 2.37 16 33 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.15 2.21 6.10 -2.91 -0.02 2.19 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.10 2.62 6.43 -2.39 -0.02 2.61 16 37 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.12 2.18 5.53 -2.39 -0.01 2.17 16 42 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H -0.01 -0.41 7.83 -2.39 -0.02 -0.43 16 46 H 0.06 3.00 5.96 -2.39 -0.01 2.99 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.00 0.17 7.83 -2.39 -0.02 0.15 16 49 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 50 H 0.06 1.97 6.15 -2.39 -0.01 1.95 16 51 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -69.68 389.12 3.58 -66.10 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.91 Total: 21.24 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.91 Total: 3.08 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.93 Total: -105.40 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.34 Total: -31.71 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.68 3.58 -66.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098578262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.599 kcal (2) G-P(sol) polarization free energy of solvation -69.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds