Wall clock time and date at job start Tue Mar 31 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.50745 * 2 1 4 4 C 1.53287 * 109.51361 * 239.90025 * 2 1 3 5 5 N 1.47152 * 108.37488 * 187.72331 * 4 2 1 6 6 C 1.34776 * 120.98879 * 230.61324 * 5 4 2 7 7 O 1.21616 * 120.00101 * 173.15560 * 6 5 4 8 8 C 1.47100 * 119.99866 * 353.16282 * 6 5 4 9 9 C 1.32614 * 124.61869 * 173.32962 * 8 6 5 10 10 C 1.51112 * 110.75753 * 179.84044 * 9 8 6 11 11 C 1.54574 * 104.90282 * 343.80507 * 10 9 8 12 12 C 1.51108 * 124.62109 * 353.62429 * 8 6 5 13 13 C 1.47158 * 118.02244 * 50.59731 * 5 4 2 14 14 C 1.53255 * 108.40587 * 309.51884 * 13 5 4 15 15 C 1.52990 * 109.39570 * 292.17540 * 14 13 5 16 16 C 1.53186 * 109.34953 * 178.87205 * 15 14 13 17 17 N 1.46934 * 108.77770 * 54.57031 * 16 15 14 18 18 C 1.36936 * 120.64327 * 126.30921 * 17 16 15 19 19 H 1.08001 * 120.00363 * 214.86789 * 18 17 16 20 20 C 1.38819 * 119.99568 * 34.86185 * 18 17 16 21 21 N 1.31620 * 120.00193 * 17.58966 * 20 18 17 22 22 Si 1.86803 * 119.99497 * 197.58671 * 20 18 17 23 23 H 1.48491 * 109.47271 * 60.00414 * 22 20 18 24 24 H 1.48503 * 109.46846 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47048 * 300.00112 * 22 20 18 26 26 C 1.46923 * 118.71973 * 306.33401 * 17 16 15 27 27 C 1.52995 * 109.36290 * 172.09426 * 14 13 5 28 28 O 1.42894 * 109.32692 * 52.15215 * 14 13 5 29 29 H 1.09001 * 109.47172 * 180.10170 * 1 2 3 30 30 H 1.08999 * 109.47346 * 60.10346 * 1 2 3 31 31 H 1.09000 * 109.47189 * 300.09927 * 1 2 3 32 32 H 1.09003 * 109.68333 * 307.44354 * 4 2 1 33 33 H 1.09005 * 109.68407 * 67.96151 * 4 2 1 34 34 H 1.08004 * 124.61779 * 0.02562 * 9 8 6 35 35 H 1.09003 * 110.51834 * 224.85359 * 10 9 8 36 36 H 1.08997 * 110.24573 * 102.62184 * 10 9 8 37 37 H 1.09007 * 110.98207 * 266.71049 * 11 10 9 38 38 H 1.08997 * 110.98760 * 142.91354 * 11 10 9 39 39 H 1.08999 * 110.36752 * 315.44189 * 12 8 6 40 40 H 1.09003 * 110.36714 * 77.76479 * 12 8 6 41 41 H 1.09003 * 109.67904 * 69.24522 * 13 5 4 42 42 H 1.09003 * 109.67755 * 189.75038 * 13 5 4 43 43 H 1.08996 * 109.49375 * 298.83591 * 15 14 13 44 44 H 1.08995 * 109.49115 * 58.90863 * 15 14 13 45 45 H 1.08998 * 109.58669 * 294.78505 * 16 15 14 46 46 H 1.08994 * 109.59224 * 174.36066 * 16 15 14 47 47 H 0.96994 * 119.99684 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.58603 * 293.88631 * 26 17 16 49 49 H 1.08998 * 109.70827 * 173.52080 * 26 17 16 50 50 H 1.09008 * 109.49036 * 301.11376 * 27 14 13 51 51 H 1.09005 * 109.49323 * 61.16203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2500 5 7 3.5013 -0.8744 -1.1342 6 6 4.3191 -0.4998 -2.1379 7 8 5.5246 -0.5144 -1.9777 8 6 3.7536 -0.0731 -3.4270 9 6 4.4600 0.4316 -4.4295 10 6 3.5662 0.7587 -5.6032 11 6 2.2511 -0.0050 -5.3263 12 6 2.2878 -0.1441 -3.7872 13 6 4.0412 -1.4451 0.1101 14 6 3.4305 -0.6881 1.2945 15 6 3.9556 0.7488 1.3042 16 6 3.3229 1.5125 2.4718 17 7 3.5735 0.7692 3.7143 18 6 4.1571 1.3840 4.7897 19 1 4.8284 0.8305 5.4295 20 6 3.8858 2.7188 5.0576 21 7 2.8340 3.2977 4.5181 22 14 5.0135 3.6933 6.1837 23 1 6.3848 3.7132 5.6144 24 1 4.5081 5.0842 6.3072 25 1 5.0435 3.0570 7.5251 26 6 3.1864 -0.6466 3.7803 27 6 3.8206 -1.3867 2.5985 28 8 2.0075 -0.6767 1.1654 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3634 0.5122 -0.8909 31 1 -0.3633 0.5154 0.8891 32 1 1.5765 -1.7077 -1.3211 33 1 1.8017 -0.1396 -2.1378 34 1 5.5290 0.5849 -4.4108 35 1 4.0163 0.4136 -6.5341 36 1 3.3796 1.8316 -5.6478 37 1 2.2591 -0.9833 -5.8069 38 1 1.3868 0.5777 -5.6450 39 1 1.8685 -1.1031 -3.4829 40 1 1.7420 0.6751 -3.3192 41 1 3.7778 -2.5009 0.1742 42 1 5.1257 -1.3359 0.1238 43 1 5.0393 0.7393 1.4205 44 1 3.6945 1.2378 0.3658 45 1 2.2488 1.6025 2.3102 46 1 3.7681 2.5047 2.5435 47 1 2.6443 4.2303 4.7055 48 1 2.1011 -0.7316 3.7247 49 1 3.5395 -1.0810 4.7155 50 1 3.4636 -2.4165 2.5804 51 1 4.9055 -1.3798 2.7044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098583401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:12 Heat of formation + Delta-G solvation = -36.372549 kcal Electronic energy + Delta-G solvation = -31287.203241 eV Core-core repulsion = 27380.431281 eV Total energy + Delta-G solvation = -3906.771961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.07675 -40.43111 -38.66789 -37.98496 -35.85371 -35.13811 -33.26656 -31.88137 -31.35289 -30.51642 -29.89534 -28.23350 -27.34039 -25.95131 -24.23965 -23.33775 -22.95181 -21.88069 -21.37642 -20.40874 -19.46686 -18.87885 -17.80290 -17.42711 -17.07968 -16.97237 -16.72947 -16.27493 -15.83287 -15.79244 -15.53480 -15.33002 -14.97757 -14.91821 -14.50399 -14.12594 -13.87368 -13.66840 -13.39104 -13.28752 -13.12105 -13.09532 -13.01406 -12.95305 -12.86153 -12.64445 -12.57383 -12.50914 -12.30451 -12.07357 -12.05378 -11.99964 -11.78840 -11.67191 -11.33193 -11.28759 -10.80932 -10.73213 -10.57101 -9.98916 -9.46317 -8.61491 -7.90722 -5.42685 0.32953 1.42819 1.45881 1.52539 1.83893 2.17584 2.47607 2.69625 3.22674 3.34955 3.54980 3.60083 3.67267 3.77021 3.86253 3.88126 3.99179 4.13191 4.18158 4.21203 4.34930 4.37883 4.42785 4.45042 4.58470 4.64096 4.65932 4.70169 4.74301 4.80050 4.80953 4.88140 4.91298 4.94889 5.00600 5.02313 5.11107 5.13354 5.21808 5.23904 5.28104 5.32901 5.36703 5.38519 5.44048 5.50220 5.61902 5.63147 6.31483 6.35021 6.39649 7.03232 7.12303 7.81308 8.39677 9.14722 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.003371 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.294150 B = 8304.088956 C = 8596.517174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.040 0.960 4 C 0.046 3.954 5 N -0.604 5.604 6 C 0.557 3.443 7 O -0.592 6.592 8 C -0.218 4.218 9 C -0.068 4.068 10 C -0.104 4.104 11 C -0.118 4.118 12 C -0.095 4.095 13 C 0.095 3.905 14 C 0.127 3.873 15 C -0.143 4.143 16 C 0.202 3.798 17 N -0.606 5.606 18 C -0.274 4.274 19 H 0.062 0.938 20 C -0.042 4.042 21 N -0.929 5.929 22 Si 0.965 3.035 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.271 1.271 26 C 0.151 3.849 27 C -0.110 4.110 28 O -0.373 6.373 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.001 0.999 46 H 0.030 0.970 47 H 0.250 0.750 48 H 0.015 0.985 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -9.298 -22.574 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.074 4.074 5 N -0.335 5.335 6 C 0.349 3.651 7 O -0.475 6.475 8 C -0.221 4.221 9 C -0.087 4.087 10 C -0.141 4.141 11 C -0.155 4.155 12 C -0.131 4.131 13 C -0.028 4.028 14 C 0.087 3.913 15 C -0.182 4.182 16 C 0.076 3.924 17 N -0.330 5.330 18 C -0.405 4.405 19 H 0.080 0.920 20 C -0.239 4.239 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.196 1.196 26 C 0.026 3.974 27 C -0.149 4.149 28 O -0.293 6.293 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.169 0.831 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.019 0.981 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.033 0.967 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.494 -9.257 -22.308 24.769 hybrid contribution 1.119 1.099 1.137 1.937 sum -4.375 -8.158 -21.171 23.106 Atomic orbital electron populations 1.21704 0.90330 1.03824 1.03296 1.22681 0.96941 0.95001 0.85178 0.94189 1.23865 0.78203 1.03862 1.01510 1.48032 1.08102 1.61919 1.15463 1.18702 0.85517 0.76208 0.84669 1.90748 1.16550 1.56719 1.83447 1.21868 0.99195 1.07744 0.93325 1.24378 0.99761 0.90007 0.94594 1.21568 0.94365 1.02158 0.95987 1.22527 0.97757 1.01599 0.93599 1.21681 0.90469 1.03445 0.97553 1.22249 0.99695 0.97834 0.83010 1.21500 0.81314 0.93761 0.94737 1.22439 0.99877 0.97366 0.98554 1.20168 0.94983 0.93172 0.84058 1.44182 1.71025 1.07304 1.10485 1.19404 1.19919 0.94963 1.06175 0.91989 1.25977 0.97494 1.00071 1.00334 1.70195 1.26499 1.11952 1.48700 0.85390 0.78655 0.77470 0.79220 1.20634 1.21732 1.19626 1.20882 0.95983 0.84359 0.96212 1.21900 1.00791 0.99409 0.92813 1.87979 1.20153 1.76640 1.44509 0.90437 0.87854 0.93580 0.88707 0.83076 0.85919 0.88597 0.88319 0.90020 0.88151 0.88926 0.88308 0.88999 0.90214 0.93392 0.92985 0.98077 0.95152 0.94066 0.96715 0.92634 0.88958 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.57 71.98 0.69 -2.11 16 2 C 0.06 1.64 3.01 30.69 0.09 1.74 16 3 H 0.04 1.30 6.29 -2.39 -0.02 1.29 16 4 C 0.05 0.96 4.57 86.35 0.39 1.36 16 5 N -0.60 -16.85 2.52 -821.68 -2.07 -18.92 16 6 C 0.56 16.89 7.67 86.57 0.66 17.56 16 7 O -0.59 -23.02 16.25 -4.08 -0.07 -23.08 16 8 C -0.22 -4.67 5.97 -18.57 -0.11 -4.78 16 9 C -0.07 -1.26 10.44 24.66 0.26 -1.00 16 10 C -0.10 -1.06 6.80 30.51 0.21 -0.85 16 11 C -0.12 -0.92 7.16 31.67 0.23 -0.69 16 12 C -0.10 -1.17 4.36 30.52 0.13 -1.04 16 13 C 0.10 2.94 5.31 86.34 0.46 3.40 16 14 C 0.13 4.52 0.68 -10.71 -0.01 4.51 16 15 C -0.14 -6.09 4.33 30.65 0.13 -5.96 16 16 C 0.20 10.49 5.06 86.36 0.44 10.92 16 17 N -0.61 -32.44 2.95 -699.09 -2.06 -34.50 16 18 C -0.27 -15.88 9.50 84.04 0.80 -15.08 16 19 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 20 C -0.04 -2.45 4.85 84.86 0.41 -2.04 16 21 N -0.93 -57.13 11.77 21.65 0.25 -56.88 16 22 Si 0.97 46.42 29.59 68.60 2.03 48.45 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.15 6.72 6.28 86.36 0.54 7.26 16 27 C -0.11 -3.93 5.10 30.66 0.16 -3.77 16 28 O -0.37 -12.93 8.64 -148.98 -1.29 -14.21 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.15 2.31 2.61 -17.55 -0.05 2.27 16 34 H 0.12 2.59 8.04 -2.91 -0.02 2.56 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.09 0.96 6.69 -2.39 -0.02 0.95 16 40 H 0.10 1.02 6.81 -2.39 -0.02 1.01 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.08 2.77 7.05 -2.39 -0.02 2.76 16 43 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 2.14 6.16 -2.39 -0.01 2.13 16 45 H 0.00 0.07 7.83 -2.39 -0.02 0.05 16 46 H 0.03 1.77 6.61 -2.39 -0.02 1.75 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.01 0.69 7.82 -2.39 -0.02 0.67 16 49 H 0.06 2.39 7.94 -2.39 -0.02 2.37 16 50 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 51 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -77.21 381.44 3.15 -74.05 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.87 Total: 15.65 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.48 Total: 9.44 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -3.88 Total: -110.30 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.35 Total: -37.30 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -77.21 3.15 -74.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098583401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.681 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds