Wall clock time and date at job start Tue Mar 31 2020 18:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.55095 * 2 1 4 4 C 1.53294 * 109.51342 * 239.87393 * 2 1 3 5 5 N 1.47153 * 108.37381 * 187.71976 * 4 2 1 6 6 C 1.34767 * 120.99201 * 230.60768 * 5 4 2 7 7 O 1.21280 * 120.00240 * 179.97438 * 6 5 4 8 8 C 1.50705 * 120.00046 * 359.97438 * 6 5 4 9 9 H 1.09000 * 115.55040 * 34.28463 * 8 6 5 10 10 C 1.53001 * 117.49917 * 248.61103 * 8 6 5 11 11 C 1.52997 * 117.51928 * 179.97438 * 8 6 5 12 12 C 1.52988 * 138.58762 * 238.37599 * 11 8 6 13 13 C 1.52991 * 138.58883 * 336.59087 * 11 8 6 14 14 C 1.47151 * 118.02059 * 50.87472 * 5 4 2 15 15 C 1.53707 * 108.17196 * 309.18807 * 14 5 4 16 16 C 1.52998 * 109.28375 * 172.23468 * 15 14 5 17 17 C 1.53182 * 109.35579 * 181.28646 * 16 15 14 18 18 N 1.46933 * 108.76933 * 305.41549 * 17 16 15 19 19 C 1.36940 * 120.64251 * 233.66300 * 18 17 16 20 20 H 1.08004 * 119.99520 * 152.30431 * 19 18 17 21 21 C 1.38801 * 120.00279 * 332.30102 * 19 18 17 22 22 N 1.31625 * 119.99718 * 342.59334 * 21 19 18 23 23 Si 1.86804 * 120.00444 * 162.59356 * 21 19 18 24 24 H 1.48493 * 109.46973 * 94.34606 * 23 21 19 25 25 H 1.48496 * 109.47281 * 214.35110 * 23 21 19 26 26 H 1.48503 * 109.46502 * 334.34896 * 23 21 19 27 27 C 1.46927 * 118.71301 * 53.68027 * 18 17 16 28 28 C 1.52983 * 109.55178 * 292.36726 * 15 14 5 29 29 O 1.42898 * 109.24370 * 52.39689 * 15 14 5 30 30 H 1.08995 * 109.47225 * 180.12174 * 1 2 3 31 31 H 1.09004 * 109.46775 * 300.12407 * 1 2 3 32 32 H 1.09003 * 109.46938 * 60.12081 * 1 2 3 33 33 H 1.09002 * 109.68628 * 68.00450 * 4 2 1 34 34 H 1.08999 * 109.72001 * 307.46547 * 4 2 1 35 35 H 1.08998 * 117.50194 * 359.96995 * 10 8 6 36 36 H 1.08999 * 117.49796 * 144.99979 * 10 8 6 37 37 H 1.09005 * 117.49514 * 238.38125 * 12 11 8 38 38 H 1.09000 * 117.50459 * 23.40266 * 12 11 8 39 39 H 1.08994 * 117.49857 * 336.59606 * 13 11 8 40 40 H 1.09000 * 117.49992 * 121.61455 * 13 11 8 41 41 H 1.09007 * 109.67243 * 68.97842 * 14 5 4 42 42 H 1.09000 * 109.67691 * 189.51566 * 14 5 4 43 43 H 1.09005 * 109.49263 * 301.25403 * 16 15 14 44 44 H 1.09005 * 109.48774 * 61.31993 * 16 15 14 45 45 H 1.08999 * 109.59094 * 185.63256 * 17 16 15 46 46 H 1.08996 * 109.70928 * 65.26760 * 17 16 15 47 47 H 0.97005 * 119.99703 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58406 * 186.54414 * 27 18 17 49 49 H 1.08998 * 109.58480 * 66.12313 * 27 18 17 50 50 H 1.08993 * 109.48887 * 298.86404 * 28 15 14 51 51 H 1.08998 * 109.48788 * 58.93119 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7252 -1.2497 5 7 3.5014 -0.8749 -1.1339 6 6 4.3192 -0.5008 -2.1377 7 8 5.5194 -0.6318 -2.0229 8 6 3.7422 0.0802 -3.4029 9 1 2.8480 0.6902 -3.2750 10 6 3.8490 -0.7584 -4.6782 11 6 4.7223 0.4861 -4.5054 12 6 5.1047 1.7384 -5.2967 13 6 6.1931 0.8840 -4.6438 14 6 4.0408 -1.4507 0.1082 15 6 3.4306 -0.6878 1.2948 16 6 3.8205 -1.3864 2.5990 17 6 3.1866 -0.6460 3.7807 18 7 3.5744 0.7697 3.7146 19 6 4.1578 1.3846 4.7902 20 1 4.8255 2.2197 4.6380 21 6 3.8909 0.9345 6.0758 22 7 2.8446 0.1684 6.3009 23 14 5.0167 1.4161 7.4866 24 1 4.4749 2.6220 8.1627 25 1 5.0974 0.2972 8.4596 26 1 6.3729 1.7118 6.9587 27 6 3.3238 1.5130 2.4722 28 6 3.9559 0.7490 1.3044 29 8 2.0075 -0.6762 1.1656 30 1 -0.3633 -1.0276 0.0022 31 1 -0.3633 0.5158 0.8889 32 1 -0.3633 0.5120 -0.8911 33 1 1.8024 -0.1403 -2.1377 34 1 1.5766 -1.7082 -1.3211 35 1 4.3369 -1.7301 -4.6022 36 1 3.0249 -0.7001 -5.3892 37 1 5.0142 1.6950 -6.3821 38 1 4.8855 2.7058 -4.8448 39 1 6.6899 1.2892 -3.7623 40 1 6.8187 0.2785 -5.2996 41 1 3.7738 -2.5058 0.1698 42 1 5.1256 -1.3448 0.1209 43 1 3.4631 -2.4160 2.5809 44 1 4.9053 -1.3794 2.7050 45 1 3.5416 -1.0787 4.7160 46 1 2.1012 -0.7302 3.7278 47 1 2.6583 -0.1464 7.1993 48 1 3.7696 2.5051 2.5437 49 1 2.2497 1.6035 2.3109 50 1 5.0396 0.7392 1.4202 51 1 3.6945 1.2380 0.3659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098642963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:04 Heat of formation + Delta-G solvation = 14.523008 kcal Electronic energy + Delta-G solvation = -30897.554575 eV Core-core repulsion = 26992.989611 eV Total energy + Delta-G solvation = -3904.564964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.77836 -39.31529 -37.49215 -36.36631 -34.56377 -33.56705 -32.78107 -31.58347 -30.13080 -29.63927 -27.48570 -26.36359 -24.71533 -23.26156 -22.61762 -22.57340 -21.66478 -20.79316 -19.88389 -18.99488 -18.57718 -17.46289 -16.94118 -16.17689 -15.73879 -15.38455 -15.21917 -14.95740 -14.78880 -14.69847 -14.25772 -14.13751 -13.54178 -13.42929 -13.28713 -13.00332 -12.80137 -12.57910 -12.31656 -12.14828 -11.86119 -11.77415 -11.67967 -11.57370 -11.40483 -11.29310 -10.99533 -10.77777 -10.61945 -10.46639 -10.35889 -10.33312 -10.24045 -10.21962 -10.05041 -9.82071 -9.69248 -9.47980 -9.29128 -8.41119 -8.35711 -6.60467 -5.73861 -3.15343 2.38973 2.76493 3.39993 3.46085 3.47303 3.50241 3.51207 3.88993 4.01092 4.35921 4.51268 4.53711 4.68786 4.74123 4.90239 5.05684 5.08493 5.16233 5.25874 5.30072 5.33166 5.38199 5.40901 5.42177 5.42619 5.48510 5.55306 5.60674 5.64558 5.66751 5.72474 5.80084 5.89360 5.96625 5.99641 6.07231 6.17918 6.32305 6.35042 6.37404 6.56372 6.59757 6.70545 6.77859 7.03672 7.33140 7.44511 7.63439 7.77442 7.84291 8.13788 8.49953 9.26831 9.90488 10.48289 11.34458 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003155 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.820704 B = 8872.349103 C = 9621.219221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.066 0.934 4 C 0.079 3.921 5 N -0.607 5.607 6 C 0.543 3.457 7 O -0.534 6.534 8 C -0.142 4.142 9 H 0.124 0.876 10 C -0.100 4.100 11 C -0.201 4.201 12 C -0.130 4.130 13 C -0.113 4.113 14 C 0.089 3.911 15 C 0.121 3.879 16 C -0.126 4.126 17 C 0.179 3.821 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.153 3.847 28 C -0.151 4.151 29 O -0.353 6.353 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.028 0.972 47 H 0.253 0.747 48 H 0.050 0.950 49 H 0.020 0.980 50 H 0.067 0.933 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -1.953 -22.858 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.084 0.916 4 C -0.044 4.044 5 N -0.340 5.340 6 C 0.331 3.669 7 O -0.411 6.411 8 C -0.163 4.163 9 H 0.142 0.858 10 C -0.137 4.137 11 C -0.202 4.202 12 C -0.166 4.166 13 C -0.150 4.150 14 C -0.034 4.034 15 C 0.081 3.919 16 C -0.166 4.166 17 C 0.053 3.947 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.081 0.919 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.027 3.973 28 C -0.191 4.191 29 O -0.272 6.272 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.038 0.962 50 H 0.085 0.915 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.110 -2.174 -22.478 22.681 hybrid contribution 0.503 0.310 0.609 0.849 sum -1.607 -1.863 -21.869 22.007 Atomic orbital electron populations 1.21699 0.92586 1.02961 1.02673 1.22397 0.95237 0.96109 0.85288 0.91650 1.22564 0.80125 1.01936 0.99788 1.48075 1.06802 1.62634 1.16512 1.19634 0.86263 0.77525 0.83484 1.90687 1.14665 1.54989 1.80732 1.21990 1.01010 1.04488 0.88789 0.85822 1.22647 1.00527 0.94386 0.96120 1.21152 0.98236 0.99162 1.01622 1.22768 1.01989 0.93320 0.98554 1.22601 0.89137 1.01060 1.02188 1.22587 1.00813 0.97188 0.82771 1.21826 0.80440 0.95365 0.94317 1.22203 1.01095 0.98638 0.94666 1.20673 0.96225 0.83177 0.94649 1.44038 1.71050 1.06069 1.10163 1.19176 1.19569 1.14768 0.84592 0.91854 1.25018 0.96727 1.00590 0.97310 1.70052 1.25437 1.38748 1.20314 0.86322 0.80771 0.77581 0.82360 1.21538 1.21568 1.20467 1.20759 0.96418 0.93860 0.86303 1.22505 1.01401 0.95746 0.99428 1.88069 1.20973 1.76277 1.41868 0.91775 0.91051 0.91413 0.89235 0.90592 0.88144 0.87590 0.88354 0.88476 0.88102 0.88562 0.91096 0.88433 0.92365 0.91171 0.89554 0.95424 0.93712 0.93193 0.96169 0.91464 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 37.16 0.36 -1.15 16 2 C 0.07 0.90 3.02 -26.58 -0.08 0.82 16 3 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 4 C 0.08 0.86 5.83 -3.53 -0.02 0.84 16 5 N -0.61 -8.23 2.51 -172.02 -0.43 -8.66 16 6 C 0.54 7.67 7.50 -10.99 -0.08 7.58 16 7 O -0.53 -9.40 15.72 5.56 0.09 -9.31 16 8 C -0.14 -1.50 5.18 -91.77 -0.48 -1.97 16 9 H 0.12 1.06 6.54 -51.93 -0.34 0.72 16 10 C -0.10 -0.87 10.24 -26.72 -0.27 -1.14 16 11 C -0.20 -2.06 5.06 -154.51 -0.78 -2.84 16 12 C -0.13 -1.06 10.53 -26.74 -0.28 -1.34 16 13 C -0.11 -1.15 10.16 -26.74 -0.27 -1.42 16 14 C 0.09 1.37 5.33 -3.32 -0.02 1.35 16 15 C 0.12 2.10 0.68 -90.26 -0.06 2.04 16 16 C -0.13 -2.46 5.10 -26.64 -0.14 -2.60 16 17 C 0.18 4.33 5.08 -3.71 -0.02 4.32 16 18 N -0.59 -15.10 2.99 -172.32 -0.52 -15.61 16 19 C -0.25 -7.02 9.59 -15.06 -0.14 -7.17 16 20 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.41 11.19 55.49 0.62 -25.79 16 23 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.15 3.34 6.28 -3.71 -0.02 3.32 16 28 C -0.15 -2.81 4.34 -26.64 -0.12 -2.92 16 29 O -0.35 -6.07 8.65 -35.23 -0.30 -6.37 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.73 5.59 -51.93 -0.29 0.44 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.10 1.63 7.08 -51.93 -0.37 1.27 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 46 H 0.03 0.72 7.83 -51.93 -0.41 0.32 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 49 H 0.02 0.45 7.83 -51.93 -0.41 0.05 16 50 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 51 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -32.60 391.83 -10.83 -43.43 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.65 Total: 1.83 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.51 Total: -2.32 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.33 Total: -50.06 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.22 Total: -15.68 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.60 -10.83 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098642963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.956 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds