Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.55095 * 2 1 4 4 C 1.53294 * 109.51342 * 239.87393 * 2 1 3 5 5 N 1.47153 * 108.37381 * 187.71976 * 4 2 1 6 6 C 1.34767 * 120.99201 * 230.60768 * 5 4 2 7 7 O 1.21280 * 120.00240 * 179.97438 * 6 5 4 8 8 C 1.50705 * 120.00046 * 359.97438 * 6 5 4 9 9 H 1.09000 * 115.55040 * 34.28463 * 8 6 5 10 10 C 1.53001 * 117.49917 * 248.61103 * 8 6 5 11 11 C 1.52997 * 117.51928 * 179.97438 * 8 6 5 12 12 C 1.52988 * 138.58762 * 238.37599 * 11 8 6 13 13 C 1.52991 * 138.58883 * 336.59087 * 11 8 6 14 14 C 1.47151 * 118.02059 * 50.87472 * 5 4 2 15 15 C 1.53707 * 108.17196 * 309.18807 * 14 5 4 16 16 C 1.52998 * 109.28375 * 172.23468 * 15 14 5 17 17 C 1.53182 * 109.35579 * 181.28646 * 16 15 14 18 18 N 1.46933 * 108.76933 * 305.41549 * 17 16 15 19 19 C 1.36940 * 120.64251 * 233.66300 * 18 17 16 20 20 H 1.08004 * 119.99520 * 152.30431 * 19 18 17 21 21 C 1.38801 * 120.00279 * 332.30102 * 19 18 17 22 22 N 1.31625 * 119.99718 * 342.59334 * 21 19 18 23 23 Si 1.86804 * 120.00444 * 162.59356 * 21 19 18 24 24 H 1.48493 * 109.46973 * 94.34606 * 23 21 19 25 25 H 1.48496 * 109.47281 * 214.35110 * 23 21 19 26 26 H 1.48503 * 109.46502 * 334.34896 * 23 21 19 27 27 C 1.46927 * 118.71301 * 53.68027 * 18 17 16 28 28 C 1.52983 * 109.55178 * 292.36726 * 15 14 5 29 29 O 1.42898 * 109.24370 * 52.39689 * 15 14 5 30 30 H 1.08995 * 109.47225 * 180.12174 * 1 2 3 31 31 H 1.09004 * 109.46775 * 300.12407 * 1 2 3 32 32 H 1.09003 * 109.46938 * 60.12081 * 1 2 3 33 33 H 1.09002 * 109.68628 * 68.00450 * 4 2 1 34 34 H 1.08999 * 109.72001 * 307.46547 * 4 2 1 35 35 H 1.08998 * 117.50194 * 359.96995 * 10 8 6 36 36 H 1.08999 * 117.49796 * 144.99979 * 10 8 6 37 37 H 1.09005 * 117.49514 * 238.38125 * 12 11 8 38 38 H 1.09000 * 117.50459 * 23.40266 * 12 11 8 39 39 H 1.08994 * 117.49857 * 336.59606 * 13 11 8 40 40 H 1.09000 * 117.49992 * 121.61455 * 13 11 8 41 41 H 1.09007 * 109.67243 * 68.97842 * 14 5 4 42 42 H 1.09000 * 109.67691 * 189.51566 * 14 5 4 43 43 H 1.09005 * 109.49263 * 301.25403 * 16 15 14 44 44 H 1.09005 * 109.48774 * 61.31993 * 16 15 14 45 45 H 1.08999 * 109.59094 * 185.63256 * 17 16 15 46 46 H 1.08996 * 109.70928 * 65.26760 * 17 16 15 47 47 H 0.97005 * 119.99703 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58406 * 186.54414 * 27 18 17 49 49 H 1.08998 * 109.58480 * 66.12313 * 27 18 17 50 50 H 1.08993 * 109.48887 * 298.86404 * 28 15 14 51 51 H 1.08998 * 109.48788 * 58.93119 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7252 -1.2497 5 7 3.5014 -0.8749 -1.1339 6 6 4.3192 -0.5008 -2.1377 7 8 5.5194 -0.6318 -2.0229 8 6 3.7422 0.0802 -3.4029 9 1 2.8480 0.6902 -3.2750 10 6 3.8490 -0.7584 -4.6782 11 6 4.7223 0.4861 -4.5054 12 6 5.1047 1.7384 -5.2967 13 6 6.1931 0.8840 -4.6438 14 6 4.0408 -1.4507 0.1082 15 6 3.4306 -0.6878 1.2948 16 6 3.8205 -1.3864 2.5990 17 6 3.1866 -0.6460 3.7807 18 7 3.5744 0.7697 3.7146 19 6 4.1578 1.3846 4.7902 20 1 4.8255 2.2197 4.6380 21 6 3.8909 0.9345 6.0758 22 7 2.8446 0.1684 6.3009 23 14 5.0167 1.4161 7.4866 24 1 4.4749 2.6220 8.1627 25 1 5.0974 0.2972 8.4596 26 1 6.3729 1.7118 6.9587 27 6 3.3238 1.5130 2.4722 28 6 3.9559 0.7490 1.3044 29 8 2.0075 -0.6762 1.1656 30 1 -0.3633 -1.0276 0.0022 31 1 -0.3633 0.5158 0.8889 32 1 -0.3633 0.5120 -0.8911 33 1 1.8024 -0.1403 -2.1377 34 1 1.5766 -1.7082 -1.3211 35 1 4.3369 -1.7301 -4.6022 36 1 3.0249 -0.7001 -5.3892 37 1 5.0142 1.6950 -6.3821 38 1 4.8855 2.7058 -4.8448 39 1 6.6899 1.2892 -3.7623 40 1 6.8187 0.2785 -5.2996 41 1 3.7738 -2.5058 0.1698 42 1 5.1256 -1.3448 0.1209 43 1 3.4631 -2.4160 2.5809 44 1 4.9053 -1.3794 2.7050 45 1 3.5416 -1.0787 4.7160 46 1 2.1012 -0.7302 3.7278 47 1 2.6583 -0.1464 7.1993 48 1 3.7696 2.5051 2.5437 49 1 2.2497 1.6035 2.3109 50 1 5.0396 0.7392 1.4202 51 1 3.6945 1.2380 0.3659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098642963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -3.898125 kcal Electronic energy + Delta-G solvation = -30898.353375 eV Core-core repulsion = 26992.989611 eV Total energy + Delta-G solvation = -3905.363764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.94330 -40.43957 -38.44272 -37.92232 -35.77916 -35.09608 -33.62153 -33.26349 -31.71412 -31.26234 -28.93812 -27.33443 -26.37249 -24.58902 -24.08692 -23.29023 -23.04901 -22.12543 -20.89378 -20.43430 -19.51248 -18.89351 -18.41694 -17.28626 -17.00514 -16.88348 -16.51664 -16.03066 -15.90062 -15.76829 -15.63470 -15.31455 -15.20340 -14.98942 -14.92020 -14.49232 -13.89200 -13.67027 -13.38626 -13.24355 -13.14506 -13.06577 -12.97709 -12.82858 -12.66228 -12.61143 -12.57028 -12.36388 -12.25103 -12.09434 -11.87404 -11.75396 -11.45112 -11.32401 -11.16145 -11.04704 -10.93919 -10.80291 -10.66747 -10.54165 -9.52813 -8.69057 -7.88556 -5.33868 1.39669 1.44569 1.46299 1.56736 1.76058 2.49553 2.68611 2.71882 2.78059 3.25476 3.30393 3.46838 3.59614 3.67480 3.76486 3.80043 3.89458 3.94475 4.00893 4.14228 4.19998 4.35242 4.39352 4.43192 4.51019 4.56032 4.61887 4.66020 4.68712 4.73696 4.75698 4.78477 4.81768 4.83896 4.87180 4.94021 5.00530 5.02282 5.03686 5.08527 5.13133 5.23887 5.26856 5.31188 5.37669 5.43991 5.62234 5.77595 6.31060 6.37017 6.38741 7.08289 7.13437 7.84057 8.37346 9.17784 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003155 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.820704 B = 8872.349103 C = 9621.219221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.054 0.946 4 C 0.084 3.916 5 N -0.608 5.608 6 C 0.536 3.464 7 O -0.579 6.579 8 C -0.149 4.149 9 H 0.150 0.850 10 C -0.078 4.078 11 C -0.225 4.225 12 C -0.104 4.104 13 C -0.137 4.137 14 C 0.098 3.902 15 C 0.129 3.871 16 C -0.119 4.119 17 C 0.191 3.809 18 N -0.608 5.608 19 C -0.267 4.267 20 H 0.062 0.938 21 C -0.048 4.048 22 N -0.931 5.931 23 Si 0.967 3.033 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.155 3.845 28 C -0.136 4.136 29 O -0.376 6.376 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.001 0.999 47 H 0.251 0.749 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.052 0.948 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -1.813 -25.892 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.001 3.999 3 H 0.072 0.928 4 C -0.038 4.038 5 N -0.340 5.340 6 C 0.327 3.673 7 O -0.458 6.458 8 C -0.170 4.170 9 H 0.168 0.832 10 C -0.115 4.115 11 C -0.226 4.226 12 C -0.140 4.140 13 C -0.174 4.174 14 C -0.025 4.025 15 C 0.089 3.911 16 C -0.158 4.158 17 C 0.065 3.935 18 N -0.332 5.332 19 C -0.398 4.398 20 H 0.080 0.920 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.197 1.197 27 C 0.029 3.971 28 C -0.175 4.175 29 O -0.296 6.296 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.019 0.981 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.071 0.929 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.180 -2.022 -25.547 25.823 hybrid contribution 0.788 0.310 1.543 1.760 sum -2.391 -1.712 -24.004 24.184 Atomic orbital electron populations 1.21713 0.90581 1.03604 1.03397 1.22712 0.96791 0.95464 0.84949 0.92756 1.22732 0.78134 1.03177 0.99784 1.48163 1.08071 1.62143 1.15585 1.20352 0.85774 0.76721 0.84482 1.90671 1.16716 1.56765 1.81685 1.22045 1.01887 1.05725 0.87323 0.83220 1.22774 1.00610 0.93132 0.95004 1.21438 0.97924 1.01078 1.02158 1.22845 0.99016 0.92560 0.99607 1.22582 0.89864 1.02842 1.02085 1.22270 0.99656 0.97565 0.83040 1.21548 0.81275 0.94268 0.94036 1.22017 1.00491 0.99255 0.94032 1.20381 0.94666 0.83207 0.95225 1.44288 1.71187 1.06879 1.10811 1.19480 1.19687 1.14908 0.85683 0.92011 1.25779 0.98011 1.00928 0.99615 1.70205 1.26948 1.39957 1.20608 0.85280 0.79060 0.77102 0.79105 1.21135 1.21550 1.19685 1.20808 0.96276 0.93932 0.86101 1.22300 1.00095 0.96594 0.98547 1.88047 1.20208 1.76944 1.44373 0.91148 0.93337 0.87673 0.85586 0.89021 0.89129 0.84131 0.86002 0.88085 0.90665 0.87987 0.89872 0.90147 0.90496 0.91501 0.92830 0.98117 0.94008 0.93570 0.96695 0.92875 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.57 71.98 0.69 -1.85 16 2 C 0.06 1.42 3.02 30.69 0.09 1.51 16 3 H 0.05 1.42 6.29 -2.39 -0.02 1.41 16 4 C 0.08 1.51 5.83 86.35 0.50 2.02 16 5 N -0.61 -15.21 2.51 -816.55 -2.05 -17.26 16 6 C 0.54 14.28 7.50 87.66 0.66 14.93 16 7 O -0.58 -20.40 15.72 -3.03 -0.05 -20.45 16 8 C -0.15 -2.66 5.18 -11.54 -0.06 -2.72 16 9 H 0.15 1.83 6.54 -2.39 -0.02 1.82 16 10 C -0.08 -1.07 10.24 30.60 0.31 -0.75 16 11 C -0.23 -4.03 5.06 -52.18 -0.26 -4.29 16 12 C -0.10 -1.41 10.53 30.59 0.32 -1.09 16 13 C -0.14 -2.69 10.16 30.59 0.31 -2.38 16 14 C 0.10 2.94 5.33 86.49 0.46 3.40 16 15 C 0.13 4.48 0.68 -10.56 -0.01 4.47 16 16 C -0.12 -4.71 5.10 30.65 0.16 -4.56 16 17 C 0.19 9.66 5.08 86.36 0.44 10.10 16 18 N -0.61 -32.19 2.99 -699.10 -2.09 -34.28 16 19 C -0.27 -15.36 9.59 84.03 0.81 -14.56 16 20 H 0.06 3.49 7.89 -2.91 -0.02 3.46 16 21 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16 22 N -0.93 -56.40 11.19 21.65 0.24 -56.15 16 23 Si 0.97 46.03 29.59 68.60 2.03 48.06 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.15 6.90 6.28 86.36 0.54 7.45 16 28 C -0.14 -5.09 4.34 30.65 0.13 -4.95 16 29 O -0.38 -12.68 8.65 -148.98 -1.29 -13.97 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 1.39 5.59 -2.39 -0.01 1.37 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.08 2.71 7.08 -2.39 -0.02 2.70 16 43 H 0.08 2.73 8.14 -2.38 -0.02 2.72 16 44 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 45 H 0.05 3.04 6.04 -2.39 -0.01 3.02 16 46 H 0.00 0.04 7.83 -2.39 -0.02 0.02 16 47 H 0.25 14.62 8.31 -92.70 -0.77 13.84 16 48 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 49 H 0.02 0.69 7.83 -2.39 -0.02 0.67 16 50 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.07 2.27 6.16 -2.39 -0.01 2.26 16 Total: -1.00 -74.65 391.83 3.21 -71.44 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.91 Total: 18.21 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.51 Total: 4.40 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.90 Total: -107.70 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.34 Total: -34.42 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.65 3.21 -71.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098642963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.539 kcal (2) G-P(sol) polarization free energy of solvation -74.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds