Wall clock time and date at job start Tue Mar 31 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46931 * 240.00410 * 2 1 3 5 5 C 1.50700 * 109.47333 * 65.00026 * 4 2 1 6 6 O 1.21277 * 120.00065 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99557 * 179.97438 * 5 4 2 8 8 C 1.48142 * 127.84149 * 359.97438 * 7 5 4 9 9 C 1.54392 * 104.61737 * 140.41811 * 8 7 5 10 10 H 1.09003 * 110.34015 * 142.73704 * 9 8 7 11 11 C 1.52995 * 110.34370 * 264.99673 * 9 8 7 12 12 C 1.54290 * 104.96052 * 23.86705 * 9 8 7 13 13 H 1.08991 * 110.34050 * 241.02629 * 12 9 8 14 14 C 1.53000 * 110.34176 * 118.86797 * 12 9 8 15 15 C 1.52997 * 109.47060 * 176.47404 * 14 12 9 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.36939 * 120.00037 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99653 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99758 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46700 * 60.00563 * 21 19 17 23 23 H 1.48496 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47581 * 300.00489 * 21 19 17 25 25 C 1.48318 * 127.76622 * 179.91111 * 7 5 4 26 26 C 1.50695 * 109.46822 * 120.00087 * 2 1 3 27 27 C 1.34513 * 125.79025 * 239.99439 * 26 2 1 28 28 C 1.41389 * 106.84115 * 180.02562 * 27 26 2 29 29 C 1.34510 * 106.84011 * 0.02562 * 28 27 26 30 30 O 1.34304 * 125.78897 * 59.69662 * 26 2 1 31 31 H 1.08995 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46840 * 300.00038 * 1 2 3 33 33 H 1.09002 * 109.46939 * 59.99687 * 1 2 3 34 34 H 1.09002 * 109.46608 * 304.99738 * 4 2 1 35 35 H 1.09005 * 109.46560 * 185.00003 * 4 2 1 36 36 H 1.08996 * 110.40882 * 21.63381 * 8 7 5 37 37 H 1.09004 * 110.50782 * 259.25101 * 8 7 5 38 38 H 1.08993 * 109.47133 * 175.54135 * 11 9 8 39 39 H 1.09003 * 109.46843 * 295.53378 * 11 9 8 40 40 H 1.08995 * 109.47131 * 55.53239 * 11 9 8 41 41 H 1.09002 * 109.47398 * 296.47573 * 14 12 9 42 42 H 1.09001 * 109.47194 * 56.47754 * 14 12 9 43 43 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 44 44 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 45 45 H 0.97004 * 119.99396 * 0.02562 * 16 15 14 46 46 H 0.97001 * 119.99359 * 179.97438 * 20 19 17 47 47 H 1.08993 * 110.38599 * 100.78351 * 25 7 5 48 48 H 1.09004 * 110.50669 * 338.30265 * 25 7 5 49 49 H 1.07998 * 126.58042 * 0.04950 * 27 26 2 50 50 H 1.08003 * 126.57726 * 180.02562 * 28 27 26 51 51 H 1.07996 * 125.78945 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0118 1.0875 -2.3633 7 7 1.9854 -0.3913 -3.7001 8 6 2.7476 -1.6158 -4.0381 9 6 2.0470 -2.1765 -5.2945 10 1 2.7811 -2.5979 -5.9813 11 6 1.0159 -3.2358 -4.9004 12 6 1.3478 -0.9603 -5.9368 13 1 0.2701 -1.1184 -5.9731 14 6 1.8961 -0.7133 -7.3437 15 6 1.1295 0.4397 -7.9946 16 7 1.6540 0.6758 -9.3420 17 6 1.1184 1.6662 -10.1214 18 1 0.3096 2.2734 -9.7427 19 6 1.6158 1.8902 -11.3979 20 7 2.6019 1.1504 -11.8592 21 14 0.8847 3.2407 -12.4614 22 1 1.0455 4.5497 -11.7789 23 1 1.5870 3.2755 -13.7693 24 1 -0.5589 2.9709 -12.6811 25 6 1.6848 0.2300 -5.0129 26 6 2.0323 -0.7104 1.2304 27 6 2.8090 -0.1720 2.1877 28 6 3.0387 -1.1852 3.1468 29 6 2.3891 -2.2823 2.7179 30 8 1.7758 -1.9869 1.5601 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7197 -1.2952 35 1 3.1264 -0.7994 -1.2056 36 1 2.6940 -2.3346 -3.2205 37 1 3.7862 -1.3702 -4.2598 38 1 0.4753 -3.5645 -5.7879 39 1 1.5245 -4.0876 -4.4488 40 1 0.3135 -2.8103 -4.1838 41 1 2.9538 -0.4572 -7.2817 42 1 1.7751 -1.6149 -7.9442 43 1 0.0718 0.1836 -8.0566 44 1 1.2504 1.3413 -7.3942 45 1 2.3802 0.1301 -9.6822 46 1 2.9491 1.3068 -12.7513 47 1 2.5563 0.7669 -5.3873 48 1 0.8300 0.9013 -4.9309 49 1 3.1846 0.8400 2.2181 50 1 3.6235 -1.0955 4.0503 51 1 2.3606 -3.2369 3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104917239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:17 Heat of formation + Delta-G solvation = -24.491993 kcal Electronic energy + Delta-G solvation = -28533.403855 eV Core-core repulsion = 24627.147074 eV Total energy + Delta-G solvation = -3906.256781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.90347 -40.37542 -38.43482 -35.36928 -35.10876 -33.25025 -33.16010 -32.02915 -30.34943 -29.32691 -28.40855 -26.80957 -26.46154 -24.36216 -23.14088 -22.52895 -22.05337 -20.78282 -20.36887 -19.91855 -19.15435 -17.84016 -17.10159 -16.94531 -16.31357 -16.19941 -15.64657 -15.10592 -15.02523 -14.62659 -14.42231 -14.08919 -13.66781 -13.44612 -13.31596 -13.31161 -13.16023 -13.13857 -13.00694 -12.89738 -12.79277 -12.27601 -12.05621 -11.80686 -11.67835 -11.60136 -11.33037 -11.27821 -11.21235 -11.00497 -10.80399 -10.54241 -10.42578 -10.32790 -10.23744 -9.98453 -9.86094 -9.64080 -8.84691 -8.79844 -8.77706 -6.89621 -5.74349 -3.02715 1.41004 2.29535 2.49196 2.64693 2.84405 3.46302 3.50283 3.51567 4.11117 4.37802 4.41747 4.44848 4.58460 4.62462 4.69960 4.72452 4.74808 4.86233 5.02611 5.11312 5.23929 5.27321 5.30738 5.33284 5.38973 5.46312 5.47483 5.56241 5.56975 5.60989 5.66923 5.73681 5.77142 5.78533 5.82527 5.88342 5.90627 6.00752 6.08131 6.12454 6.17332 6.19499 6.27718 6.39153 6.45962 6.82932 6.86277 6.90276 7.44668 7.72349 8.02650 8.44998 9.55864 10.14306 10.48780 11.48581 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.598154 B =14856.345475 C =15452.201783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.007 3.993 3 H 0.108 0.892 4 C -0.133 4.133 5 C 0.535 3.465 6 O -0.538 6.538 7 N -0.622 5.622 8 C 0.102 3.898 9 C -0.104 4.104 10 H 0.090 0.910 11 C -0.142 4.142 12 C -0.092 4.092 13 H 0.082 0.918 14 C -0.116 4.116 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.109 3.891 26 C -0.001 4.001 27 C -0.212 4.212 28 C -0.213 4.213 29 C -0.047 4.047 30 O -0.174 6.174 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.019 0.981 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.147 0.853 50 H 0.147 0.853 51 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 -11.314 29.640 31.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 H 0.127 0.873 4 C -0.173 4.173 5 C 0.324 3.676 6 O -0.416 6.416 7 N -0.356 5.356 8 C -0.021 4.021 9 C -0.124 4.124 10 H 0.109 0.891 11 C -0.200 4.200 12 C -0.112 4.112 13 H 0.100 0.900 14 C -0.154 4.154 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.013 4.013 26 C -0.052 4.052 27 C -0.231 4.231 28 C -0.232 4.232 29 C -0.114 4.114 30 O -0.070 6.070 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.037 0.963 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.165 0.835 50 H 0.165 0.835 51 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.772 -10.772 29.579 31.489 hybrid contribution 0.189 0.520 -0.528 0.765 sum 0.961 -10.253 29.051 30.822 Atomic orbital electron populations 1.21986 0.92913 1.02348 1.03858 1.19534 0.97322 0.97978 0.86290 0.87346 1.21726 1.03206 1.00494 0.91863 1.20088 0.79078 0.85387 0.83045 1.90695 1.40453 1.24697 1.85761 1.49081 1.55081 1.25733 1.05677 1.22531 0.95572 0.86396 0.97566 1.22200 0.98114 0.95849 0.96206 0.89135 1.21837 0.98660 0.97783 1.01678 1.22159 1.00827 0.93344 0.94858 0.89969 1.21809 1.00230 1.00032 0.93355 1.20684 0.95433 0.94300 0.87241 1.42357 1.42631 1.41040 1.11769 1.19206 1.13518 1.08968 0.95343 0.91252 1.24742 0.98879 0.99818 0.97655 1.69652 1.28710 1.41918 1.18082 0.86258 0.78331 0.81758 0.79799 1.21269 1.21688 1.21279 1.22555 1.02036 0.95894 0.80778 1.22475 1.01096 0.82660 0.98921 1.21642 1.04179 1.01349 0.95902 1.21839 1.05537 0.93550 1.02287 1.24031 0.99214 1.00907 0.87257 1.84008 1.59040 1.28275 1.35639 0.92704 0.92366 0.89489 0.88448 0.88625 0.90413 0.90735 0.92030 0.92693 0.92791 0.91673 0.91452 0.96495 0.96338 0.78349 0.93517 0.90490 0.89766 0.83480 0.83538 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.92 37.16 0.33 -1.13 16 2 C 0.01 0.07 2.44 -91.77 -0.22 -0.16 16 3 H 0.11 1.01 7.91 -51.93 -0.41 0.60 16 4 C -0.13 -1.14 4.13 -27.88 -0.12 -1.26 16 5 C 0.53 6.28 7.63 -10.99 -0.08 6.20 16 6 O -0.54 -8.13 14.23 5.56 0.08 -8.05 16 7 N -0.62 -6.93 3.32 -169.17 -0.56 -7.49 16 8 C 0.10 0.87 6.47 -2.41 -0.02 0.85 16 9 C -0.10 -0.97 3.31 -89.22 -0.30 -1.26 16 10 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 11 C -0.14 -1.19 8.90 37.16 0.33 -0.86 16 12 C -0.09 -1.10 2.73 -89.22 -0.24 -1.35 16 13 H 0.08 1.03 7.71 -51.93 -0.40 0.63 16 14 C -0.12 -1.74 4.51 -26.73 -0.12 -1.86 16 15 C 0.15 3.00 6.12 -4.04 -0.02 2.98 16 16 N -0.73 -18.78 5.60 -59.91 -0.34 -19.12 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 21 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.11 1.40 5.80 -2.31 -0.01 1.39 16 26 C 0.00 -0.01 5.83 -35.63 -0.21 -0.22 16 27 C -0.21 -1.81 10.78 -39.70 -0.43 -2.24 16 28 C -0.21 -1.59 10.91 -39.70 -0.43 -2.02 16 29 C -0.05 -0.33 12.09 29.41 0.36 0.03 16 30 O -0.17 -1.58 10.65 5.69 0.06 -1.52 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.99 5.95 -51.93 -0.31 0.68 16 34 H 0.10 0.74 7.95 -51.93 -0.41 0.33 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.51 7.02 -51.93 -0.36 0.15 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.38 7.53 -51.93 -0.39 -0.01 16 45 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.08 1.03 7.78 -51.93 -0.40 0.63 16 48 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 49 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 50 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 51 H 0.20 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -33.62 410.52 -9.15 -42.78 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.85 Total: 5.70 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.43 Total: -8.42 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.17 Total: -54.37 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.14 Total: -9.57 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.62 -9.15 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104917239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.286 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds