Wall clock time and date at job start Tue Mar 31 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46931 * 240.00410 * 2 1 3 5 5 C 1.50700 * 109.47333 * 65.00026 * 4 2 1 6 6 O 1.21277 * 120.00065 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99557 * 179.97438 * 5 4 2 8 8 C 1.48142 * 127.84149 * 359.97438 * 7 5 4 9 9 C 1.54392 * 104.61737 * 140.41811 * 8 7 5 10 10 H 1.09003 * 110.34015 * 142.73704 * 9 8 7 11 11 C 1.52995 * 110.34370 * 264.99673 * 9 8 7 12 12 C 1.54290 * 104.96052 * 23.86705 * 9 8 7 13 13 H 1.08991 * 110.34050 * 241.02629 * 12 9 8 14 14 C 1.53000 * 110.34176 * 118.86797 * 12 9 8 15 15 C 1.52997 * 109.47060 * 176.47404 * 14 12 9 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.36939 * 120.00037 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99653 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99758 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46700 * 60.00563 * 21 19 17 23 23 H 1.48496 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47581 * 300.00489 * 21 19 17 25 25 C 1.48318 * 127.76622 * 179.91111 * 7 5 4 26 26 C 1.50695 * 109.46822 * 120.00087 * 2 1 3 27 27 C 1.34513 * 125.79025 * 239.99439 * 26 2 1 28 28 C 1.41389 * 106.84115 * 180.02562 * 27 26 2 29 29 C 1.34510 * 106.84011 * 0.02562 * 28 27 26 30 30 O 1.34304 * 125.78897 * 59.69662 * 26 2 1 31 31 H 1.08995 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46840 * 300.00038 * 1 2 3 33 33 H 1.09002 * 109.46939 * 59.99687 * 1 2 3 34 34 H 1.09002 * 109.46608 * 304.99738 * 4 2 1 35 35 H 1.09005 * 109.46560 * 185.00003 * 4 2 1 36 36 H 1.08996 * 110.40882 * 21.63381 * 8 7 5 37 37 H 1.09004 * 110.50782 * 259.25101 * 8 7 5 38 38 H 1.08993 * 109.47133 * 175.54135 * 11 9 8 39 39 H 1.09003 * 109.46843 * 295.53378 * 11 9 8 40 40 H 1.08995 * 109.47131 * 55.53239 * 11 9 8 41 41 H 1.09002 * 109.47398 * 296.47573 * 14 12 9 42 42 H 1.09001 * 109.47194 * 56.47754 * 14 12 9 43 43 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 44 44 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 45 45 H 0.97004 * 119.99396 * 0.02562 * 16 15 14 46 46 H 0.97001 * 119.99359 * 179.97438 * 20 19 17 47 47 H 1.08993 * 110.38599 * 100.78351 * 25 7 5 48 48 H 1.09004 * 110.50669 * 338.30265 * 25 7 5 49 49 H 1.07998 * 126.58042 * 0.04950 * 27 26 2 50 50 H 1.08003 * 126.57726 * 180.02562 * 28 27 26 51 51 H 1.07996 * 125.78945 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0118 1.0875 -2.3633 7 7 1.9854 -0.3913 -3.7001 8 6 2.7476 -1.6158 -4.0381 9 6 2.0470 -2.1765 -5.2945 10 1 2.7811 -2.5979 -5.9813 11 6 1.0159 -3.2358 -4.9004 12 6 1.3478 -0.9603 -5.9368 13 1 0.2701 -1.1184 -5.9731 14 6 1.8961 -0.7133 -7.3437 15 6 1.1295 0.4397 -7.9946 16 7 1.6540 0.6758 -9.3420 17 6 1.1184 1.6662 -10.1214 18 1 0.3096 2.2734 -9.7427 19 6 1.6158 1.8902 -11.3979 20 7 2.6019 1.1504 -11.8592 21 14 0.8847 3.2407 -12.4614 22 1 1.0455 4.5497 -11.7789 23 1 1.5870 3.2755 -13.7693 24 1 -0.5589 2.9709 -12.6811 25 6 1.6848 0.2300 -5.0129 26 6 2.0323 -0.7104 1.2304 27 6 2.8090 -0.1720 2.1877 28 6 3.0387 -1.1852 3.1468 29 6 2.3891 -2.2823 2.7179 30 8 1.7758 -1.9869 1.5601 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7197 -1.2952 35 1 3.1264 -0.7994 -1.2056 36 1 2.6940 -2.3346 -3.2205 37 1 3.7862 -1.3702 -4.2598 38 1 0.4753 -3.5645 -5.7879 39 1 1.5245 -4.0876 -4.4488 40 1 0.3135 -2.8103 -4.1838 41 1 2.9538 -0.4572 -7.2817 42 1 1.7751 -1.6149 -7.9442 43 1 0.0718 0.1836 -8.0566 44 1 1.2504 1.3413 -7.3942 45 1 2.3802 0.1301 -9.6822 46 1 2.9491 1.3068 -12.7513 47 1 2.5563 0.7669 -5.3873 48 1 0.8300 0.9013 -4.9309 49 1 3.1846 0.8400 2.2181 50 1 3.6235 -1.0955 4.0503 51 1 2.3606 -3.2369 3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104917239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:16 Heat of formation + Delta-G solvation = -43.894805 kcal Electronic energy + Delta-G solvation = -28534.245224 eV Core-core repulsion = 24627.147074 eV Total energy + Delta-G solvation = -3907.098150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.48587 -41.28717 -39.39243 -36.87074 -36.09497 -34.54918 -33.81401 -33.35090 -31.84062 -30.15661 -29.24066 -27.98105 -27.29980 -25.86991 -24.30659 -23.66536 -22.64756 -22.09253 -21.01217 -20.87858 -19.98877 -19.15582 -18.53841 -17.68119 -17.13198 -16.93915 -16.65103 -16.54887 -16.13158 -15.80282 -15.29909 -15.19176 -15.17275 -14.87549 -14.43683 -14.21897 -14.09055 -14.02930 -13.70523 -13.68610 -13.46628 -13.24954 -13.12165 -12.91735 -12.87962 -12.73993 -12.48489 -12.36644 -12.30011 -12.22005 -12.16538 -12.00081 -11.88027 -11.56711 -11.50369 -11.26350 -10.92690 -10.82567 -10.80315 -9.72386 -9.36039 -9.00949 -7.96566 -5.25338 0.82743 1.46089 1.49189 1.55442 1.59411 1.72138 1.92588 2.15092 2.55067 3.34832 3.36654 3.60834 3.63843 3.68878 3.77150 3.94982 4.01190 4.14858 4.17089 4.23840 4.31559 4.34103 4.38365 4.47117 4.52324 4.56785 4.61871 4.65064 4.68170 4.71246 4.81001 4.88282 4.91283 4.93659 4.94193 5.03770 5.07825 5.11092 5.12815 5.19746 5.21805 5.29658 5.36424 5.38139 5.40341 5.48342 5.56462 5.63499 6.25018 6.26376 6.57795 7.12211 7.32442 8.08800 8.32606 9.26560 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.598154 B =14856.345475 C =15452.201783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.011 3.989 3 H 0.099 0.901 4 C -0.121 4.121 5 C 0.530 3.470 6 O -0.580 6.580 7 N -0.622 5.622 8 C 0.102 3.898 9 C -0.099 4.099 10 H 0.101 0.899 11 C -0.139 4.139 12 C -0.083 4.083 13 H 0.076 0.924 14 C -0.100 4.100 15 C 0.148 3.852 16 N -0.747 5.747 17 C -0.251 4.251 18 H 0.071 0.929 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.109 3.891 26 C -0.015 4.015 27 C -0.222 4.222 28 C -0.228 4.228 29 C -0.042 4.042 30 O -0.186 6.186 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.375 0.625 46 H 0.252 0.748 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.153 0.847 50 H 0.165 0.835 51 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -13.035 31.339 33.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.008 4.008 3 H 0.117 0.883 4 C -0.161 4.161 5 C 0.321 3.679 6 O -0.461 6.461 7 N -0.355 5.355 8 C -0.020 4.020 9 C -0.118 4.118 10 H 0.119 0.881 11 C -0.196 4.196 12 C -0.103 4.103 13 H 0.095 0.905 14 C -0.138 4.138 15 C 0.022 3.978 16 N -0.389 5.389 17 C -0.383 4.383 18 H 0.089 0.911 19 C -0.267 4.267 20 N -0.617 5.617 21 Si 0.802 3.198 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.014 4.014 26 C -0.065 4.065 27 C -0.241 4.241 28 C -0.247 4.247 29 C -0.109 4.109 30 O -0.082 6.082 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.207 0.793 46 H 0.061 0.939 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.170 0.830 50 H 0.182 0.818 51 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.306 -12.514 31.311 33.744 hybrid contribution 0.001 1.055 -0.973 1.435 sum 1.307 -11.459 30.337 32.456 Atomic orbital electron populations 1.21902 0.93601 1.02299 1.02775 1.19413 0.96711 0.97769 0.86901 0.88276 1.21698 1.04306 1.00366 0.89686 1.20706 0.78277 0.85078 0.83879 1.90681 1.42320 1.26679 1.86377 1.49155 1.55037 1.26399 1.04865 1.22743 0.95527 0.85641 0.98064 1.22187 0.98362 0.94696 0.96528 0.88116 1.21813 0.98320 0.98061 1.01408 1.22019 1.00679 0.94609 0.92954 0.90513 1.21644 0.99598 0.97880 0.94683 1.20857 0.95733 0.96132 0.85060 1.42572 1.42468 1.40386 1.13507 1.19597 1.13355 1.09387 0.95951 0.91088 1.25570 0.99656 1.02381 0.99054 1.69801 1.30107 1.43601 1.18242 0.85215 0.77739 0.79069 0.77763 1.20561 1.21769 1.20404 1.22390 1.00710 0.95998 0.82294 1.22352 1.02013 0.83037 0.99136 1.21915 1.04013 1.02026 0.96190 1.22146 1.06207 0.93419 1.02894 1.24771 0.97761 1.02093 0.86292 1.83997 1.59527 1.28137 1.36572 0.92155 0.92255 0.91686 0.86817 0.86790 0.87591 0.89574 0.92633 0.90428 0.93440 0.91526 0.91226 0.96828 0.96716 0.79285 0.93898 0.91325 0.92182 0.82958 0.81761 0.74814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.92 71.98 0.64 -2.19 16 2 C 0.01 0.19 2.44 -11.54 -0.03 0.16 16 3 H 0.10 1.89 7.91 -2.39 -0.02 1.87 16 4 C -0.12 -1.87 4.13 29.85 0.12 -1.75 16 5 C 0.53 12.21 7.63 87.66 0.67 12.88 16 6 O -0.58 -18.12 14.23 -3.02 -0.04 -18.17 16 7 N -0.62 -13.25 3.32 -807.52 -2.68 -15.93 16 8 C 0.10 1.45 6.47 86.54 0.56 2.01 16 9 C -0.10 -1.60 3.31 -9.89 -0.03 -1.63 16 10 H 0.10 1.50 7.71 -2.39 -0.02 1.48 16 11 C -0.14 -1.96 8.90 71.98 0.64 -1.31 16 12 C -0.08 -1.93 2.73 -9.88 -0.03 -1.96 16 13 H 0.08 1.90 7.71 -2.39 -0.02 1.88 16 14 C -0.10 -2.97 4.51 30.59 0.14 -2.83 16 15 C 0.15 6.01 6.12 86.38 0.53 6.54 16 16 N -0.75 -38.81 5.60 -343.46 -1.92 -40.73 16 17 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 18 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 20 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 21 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 25 C 0.11 2.82 5.80 86.50 0.50 3.32 16 26 C -0.02 -0.26 5.83 24.83 0.14 -0.11 16 27 C -0.22 -3.54 10.78 22.19 0.24 -3.30 16 28 C -0.23 -2.91 10.91 22.19 0.24 -2.67 16 29 C -0.04 -0.48 12.09 66.97 0.81 0.33 16 30 O -0.19 -2.99 10.65 -2.56 -0.03 -3.02 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.54 5.95 -2.39 -0.01 1.53 16 34 H 0.11 1.42 7.95 -2.39 -0.02 1.40 16 35 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.11 0.96 7.02 -2.39 -0.02 0.94 16 37 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 1.97 8.02 -2.39 -0.02 1.95 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.01 0.62 7.53 -2.39 -0.02 0.60 16 45 H 0.38 20.36 7.67 -92.71 -0.71 19.65 16 46 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 47 H 0.07 1.88 7.78 -2.39 -0.02 1.86 16 48 H 0.06 1.83 7.89 -2.38 -0.02 1.81 16 49 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 50 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 51 H 0.24 0.70 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -73.68 410.52 4.28 -69.40 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.19 Total: 28.84 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 6.46 Total: -10.02 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.32 Total: -115.99 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.07 Total: -21.19 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -73.68 4.28 -69.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104917239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.501 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds