Wall clock time and date at job start Tue Mar 31 2020 18:37:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 C 1.52996 * 109.46961 * 80.85948 * 3 2 1
5 5 C 1.53002 * 109.46992 * 179.97438 * 4 3 2
6 6 C 1.50707 * 109.47164 * 179.97438 * 5 4 3
7 7 O 1.21281 * 119.99547 * 0.02562 * 6 5 4
8 8 N 1.34775 * 119.99846 * 179.97438 * 6 5 4
9 9 C 1.47154 * 120.99048 * 359.97438 * 8 6 5
10 10 C 1.53294 * 108.37324 * 230.61527 * 9 8 6
11 11 H 1.09001 * 109.51295 * 67.57908 * 10 9 8
12 12 C 1.53001 * 109.50980 * 187.67077 * 10 9 8
13 13 O 1.42968 * 109.22952 * 307.64777 * 10 9 8
14 14 C 1.42897 * 114.20267 * 62.49568 * 13 10 9
15 15 C 1.52996 * 109.54816 * 177.77735 * 14 13 10
16 16 C 1.53190 * 109.35347 * 300.93873 * 15 14 13
17 17 N 1.46929 * 108.77371 * 305.42377 * 16 15 14
18 18 C 1.36937 * 120.64653 * 233.65558 * 17 16 15
19 19 H 1.08007 * 119.99429 * 27.69077 * 18 17 16
20 20 C 1.38805 * 120.00276 * 207.68769 * 18 17 16
21 21 N 1.31617 * 120.00093 * 17.37488 * 20 18 17
22 22 Si 1.86803 * 120.00297 * 197.37256 * 20 18 17
23 23 H 1.48498 * 109.46915 * 90.00086 * 22 20 18
24 24 H 1.48499 * 109.47322 * 210.00199 * 22 20 18
25 25 H 1.48501 * 109.46909 * 330.00397 * 22 20 18
26 26 C 1.46934 * 118.71346 * 53.67536 * 17 16 15
27 27 C 1.52978 * 109.56737 * 57.47232 * 14 13 10
28 28 C 1.47152 * 120.98516 * 179.97438 * 8 6 5
29 29 H 4.44645 * 5.63307 * 180.02562 * 4 1 2
30 30 H 1.08993 * 109.47342 * 320.85892 * 3 2 1
31 31 H 1.09001 * 109.46526 * 200.85777 * 3 2 1
32 32 H 1.09006 * 109.47108 * 60.00044 * 4 3 2
33 33 H 1.09000 * 109.47353 * 299.99871 * 4 3 2
34 34 H 1.09001 * 109.47370 * 60.00137 * 5 4 3
35 35 H 1.09000 * 109.47200 * 300.00251 * 5 4 3
36 36 H 1.09009 * 109.67889 * 350.33638 * 9 8 6
37 37 H 1.09001 * 109.68175 * 110.89212 * 9 8 6
38 38 H 1.09002 * 109.47239 * 60.00456 * 12 10 9
39 39 H 1.09005 * 109.47049 * 179.97438 * 12 10 9
40 40 H 1.08991 * 109.47495 * 300.00134 * 12 10 9
41 41 H 1.08995 * 109.49517 * 180.97230 * 15 14 13
42 42 H 1.09009 * 109.49114 * 60.89968 * 15 14 13
43 43 H 1.08999 * 109.59326 * 65.21175 * 16 15 14
44 44 H 1.09000 * 109.59068 * 185.64283 * 16 15 14
45 45 H 0.96996 * 120.00891 * 180.02562 * 21 20 18
46 46 H 1.09004 * 109.58497 * 66.11075 * 26 17 16
47 47 H 1.08996 * 109.59033 * 186.53781 * 26 17 16
48 48 H 1.09006 * 109.49188 * 299.09384 * 27 14 13
49 49 H 1.08997 * 109.51397 * 179.03233 * 27 14 13
50 50 H 1.08996 * 109.67879 * 9.77712 * 28 8 6
51 51 H 1.08998 * 109.68242 * 249.23030 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1561 -0.2283 -1.4242
5 6 4.6861 -0.2269 -1.4243
6 6 5.1885 -0.4531 -2.8270
7 8 4.4004 -0.6002 -3.7370
8 7 6.5136 -0.4907 -3.0703
9 6 7.4890 -0.3130 -1.9828
10 6 8.4989 0.7583 -2.4097
11 1 8.0003 1.7258 -2.4686
12 6 9.6325 0.8292 -1.3847
13 8 9.0332 0.4176 -3.6913
14 6 8.0624 0.3781 -4.7391
15 6 8.7540 0.0596 -6.0661
16 6 9.8078 1.1320 -6.3596
17 7 9.1641 2.4520 -6.3155
18 6 9.2759 3.3188 -7.3698
19 1 9.4229 2.9370 -8.3694
20 6 9.2004 4.6878 -7.1538
21 7 9.3650 5.1729 -5.9414
22 14 8.8653 5.8420 -8.5839
23 1 7.4003 6.0354 -8.7310
24 1 9.5140 7.1524 -8.3250
25 1 9.4150 5.2555 -9.8325
26 6 8.3983 2.8243 -5.1180
27 6 7.3598 1.7334 -4.8380
28 6 7.0280 -0.7106 -4.4313
29 1 -1.0500 0.0002 -0.0001
30 1 3.0097 -0.7962 0.6486
31 1 3.0088 0.9612 0.3659
32 1 2.7923 0.5687 -2.0729
33 1 2.7932 -1.1887 -1.7901
34 1 5.0502 -1.0236 -0.7755
35 1 5.0486 0.7337 -1.0585
36 1 6.9743 0.0077 -1.0769
37 1 8.0076 -1.2536 -1.7976
38 1 10.1318 -0.1380 -1.3276
39 1 10.3505 1.5908 -1.6891
40 1 9.2233 1.0851 -0.4075
41 1 8.0153 0.0467 -6.8674
42 1 9.2364 -0.9158 -5.9999
43 1 10.5963 1.0848 -5.6086
44 1 10.2327 0.9657 -7.3495
45 1 9.3119 6.1295 -5.7903
46 1 9.0726 2.9142 -4.2664
47 1 7.8928 3.7749 -5.2884
48 1 6.8507 1.9486 -3.8984
49 1 6.6316 1.7078 -5.6486
50 1 6.2085 -0.6513 -5.1475
51 1 7.4987 -1.6919 -4.4918
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001111542083.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:37:46
Heat of formation + Delta-G solvation = -29.700803 kcal
Electronic energy + Delta-G solvation = -30460.842813 eV
Core-core repulsion = 26554.360161 eV
Total energy + Delta-G solvation = -3906.482652 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-41.86991 -40.12721 -37.96701 -36.54599 -35.74553 -35.12282 -33.38053 -33.02595
-31.82604 -31.23178 -29.59018 -28.08759 -27.20162 -25.83905 -24.22402 -23.53536
-22.87151 -22.00613 -20.54780 -19.99812 -19.06353 -18.87238 -18.04129 -17.27093
-17.16847 -16.84872 -16.73641 -16.21633 -15.80298 -15.65086 -15.34646 -15.24559
-14.94050 -14.89503 -14.60560 -14.50699 -13.84475 -13.64316 -13.48702 -13.30237
-13.26587 -13.13674 -13.06437 -12.91730 -12.81249 -12.63551 -12.56884 -12.36014
-12.23441 -12.01492 -11.95246 -11.89274 -11.74241 -11.42097 -11.28985 -11.14928
-10.96197 -10.78290 -10.72657 -10.53369 -9.48800 -8.68339 -7.88628 -5.33255
1.43898 1.45921 1.54326 1.59619 1.79427 1.93429 1.99215 2.49096
2.73496 3.25331 3.44046 3.55100 3.61233 3.70768 3.83915 3.91305
3.96619 4.05938 4.12046 4.18534 4.27172 4.38777 4.42426 4.46254
4.55724 4.64502 4.65522 4.66412 4.69119 4.73368 4.78985 4.82234
4.85036 4.94264 4.97864 5.05783 5.13397 5.17896 5.19220 5.21503
5.30547 5.33846 5.36242 5.40929 5.46573 5.62764 5.70355 6.36361
6.36823 6.41180 6.72966 7.13126 7.13549 7.85323 8.38066 9.17777
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.012511 B = 0.003097 C = 0.002789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.522248 B = 9039.915034 C =10035.272745
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.216 4.216
3 C -0.009 4.009
4 C -0.094 4.094
5 C -0.131 4.131
6 C 0.506 3.494
7 O -0.589 6.589
8 N -0.614 5.614
9 C 0.083 3.917
10 C 0.058 3.942
11 H 0.045 0.955
12 C -0.134 4.134
13 O -0.374 6.374
14 C 0.127 3.873
15 C -0.111 4.111
16 C 0.150 3.850
17 N -0.610 5.610
18 C -0.262 4.262
19 H 0.067 0.933
20 C -0.052 4.052
21 N -0.934 5.934
22 Si 0.965 3.035
23 H -0.288 1.288
24 H -0.293 1.293
25 H -0.267 1.267
26 C 0.195 3.805
27 C -0.143 4.143
28 C 0.097 3.903
29 H 0.238 0.762
30 H 0.112 0.888
31 H 0.104 0.896
32 H 0.046 0.954
33 H 0.056 0.944
34 H 0.134 0.866
35 H 0.120 0.880
36 H 0.130 0.870
37 H 0.097 0.903
38 H 0.075 0.925
39 H 0.043 0.957
40 H 0.103 0.897
41 H 0.070 0.930
42 H 0.091 0.909
43 H 0.017 0.983
44 H 0.054 0.946
45 H 0.249 0.751
46 H -0.001 1.001
47 H 0.045 0.955
48 H 0.057 0.943
49 H 0.045 0.955
50 H 0.077 0.923
51 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.717 -14.699 16.922 23.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.216 4.216
3 C -0.046 4.046
4 C -0.132 4.132
5 C -0.170 4.170
6 C 0.297 3.703
7 O -0.470 6.470
8 N -0.346 5.346
9 C -0.038 4.038
10 C 0.000 4.000
11 H 0.063 0.937
12 C -0.192 4.192
13 O -0.293 6.293
14 C 0.086 3.914
15 C -0.150 4.150
16 C 0.024 3.976
17 N -0.333 5.333
18 C -0.392 4.392
19 H 0.085 0.915
20 C -0.247 4.247
21 N -0.580 5.580
22 Si 0.794 3.206
23 H -0.215 1.215
24 H -0.220 1.220
25 H -0.192 1.192
26 C 0.069 3.931
27 C -0.183 4.183
28 C -0.027 4.027
29 H 0.255 0.745
30 H 0.130 0.870
31 H 0.122 0.878
32 H 0.065 0.935
33 H 0.075 0.925
34 H 0.152 0.848
35 H 0.138 0.862
36 H 0.148 0.852
37 H 0.115 0.885
38 H 0.094 0.906
39 H 0.062 0.938
40 H 0.122 0.878
41 H 0.089 0.911
42 H 0.110 0.890
43 H 0.035 0.965
44 H 0.073 0.927
45 H 0.058 0.942
46 H 0.018 0.982
47 H 0.063 0.937
48 H 0.075 0.925
49 H 0.063 0.937
50 H 0.096 0.904
51 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -7.902 -14.667 16.451 23.413
hybrid contribution -0.568 1.289 -1.144 1.815
sum -8.469 -13.378 15.306 22.023
Atomic orbital electron populations
1.25708 0.97131 1.00976 1.00134 1.23861 0.95899 1.00782 1.01078
1.18848 0.83700 1.05079 0.96923 1.21175 0.93739 1.02132 0.96181
1.21777 0.96388 1.06849 0.91997 1.21527 0.81129 0.74959 0.92702
1.90687 1.55784 1.51935 1.48565 1.48282 1.06036 1.71285 1.09015
1.22738 0.90383 1.00498 0.90230 1.22672 0.96076 0.96805 0.84425
0.93725 1.21698 0.96921 1.03094 0.97464 1.87987 1.34444 1.90228
1.16655 1.21505 0.88384 0.92901 0.88574 1.21892 0.99254 0.99795
0.94050 1.20892 0.93377 0.84761 0.98528 1.44312 1.57701 1.14354
1.16955 1.19542 1.44197 0.87539 0.87916 0.91525 1.25785 1.01547
0.98619 0.98790 1.70188 1.54060 1.11863 1.21926 0.85290 0.77532
0.78177 0.79627 1.21541 1.21968 1.19177 1.20311 0.90770 0.94671
0.87321 1.22448 0.98572 0.97280 0.99955 1.22179 0.97083 0.98724
0.84696 0.74501 0.86982 0.87768 0.93539 0.92508 0.84829 0.86220
0.85210 0.88450 0.90623 0.93813 0.87842 0.91097 0.89043 0.96497
0.92702 0.94185 0.98245 0.93665 0.92469 0.93668 0.90445 0.89339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -3.80 19.25 74.32 1.43 -2.37 16
2 C -0.22 -3.98 13.34 31.12 0.42 -3.56 16
3 C -0.01 -0.12 5.70 28.79 0.16 0.05 16
4 C -0.09 -1.65 4.46 30.59 0.14 -1.52 16
5 C -0.13 -1.83 4.07 29.85 0.12 -1.71 16
6 C 0.51 12.63 7.71 87.66 0.68 13.30 16
7 O -0.59 -20.49 15.45 -3.03 -0.05 -20.54 16
8 N -0.61 -14.54 2.52 -817.34 -2.06 -16.60 16
9 C 0.08 1.38 5.83 86.35 0.50 1.88 16
10 C 0.06 1.42 3.01 30.69 0.09 1.51 16
11 H 0.04 1.30 6.29 -2.39 -0.02 1.28 16
12 C -0.13 -2.52 9.57 71.98 0.69 -1.84 16
13 O -0.37 -12.06 8.65 -148.98 -1.29 -13.35 16
14 C 0.13 4.23 0.68 -10.71 -0.01 4.23 16
15 C -0.11 -3.80 5.10 30.66 0.16 -3.65 16
16 C 0.15 6.45 6.28 86.36 0.54 7.00 16
17 N -0.61 -31.85 2.99 -699.06 -2.09 -33.94 16
18 C -0.26 -14.88 9.59 84.03 0.81 -14.07 16
19 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16
20 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16
21 N -0.93 -56.66 11.19 21.65 0.24 -56.42 16
22 Si 0.97 46.19 29.59 68.60 2.03 48.22 16
23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16
25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
26 C 0.20 9.84 5.08 86.36 0.44 10.28 16
27 C -0.14 -5.80 4.33 30.65 0.13 -5.67 16
28 C 0.10 2.74 5.30 86.35 0.46 3.20 16
29 H 0.24 2.40 7.80 -4.42 -0.03 2.36 16
30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16
32 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16
33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16
34 H 0.13 0.89 8.02 -2.39 -0.02 0.88 16
35 H 0.12 1.19 7.66 -2.39 -0.02 1.17 16
36 H 0.13 1.13 6.05 -2.38 -0.01 1.11 16
37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
39 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16
40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
42 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16
43 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16
44 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16
45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16
46 H 0.00 -0.03 7.83 -2.38 -0.02 -0.05 16
47 H 0.04 2.61 6.03 -2.39 -0.01 2.60 16
48 H 0.06 2.17 6.15 -2.38 -0.01 2.16 16
49 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16
50 H 0.08 2.54 7.07 -2.39 -0.02 2.52 16
51 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -78.32 398.40 4.84 -73.48
By element:
Atomic # 1 Polarization: 13.77 SS G_CDS: 0.89 Total: 14.66 kcal
Atomic # 6 Polarization: -2.69 SS G_CDS: 7.17 Total: 4.49 kcal
Atomic # 7 Polarization: -103.05 SS G_CDS: -3.91 Total: -106.96 kcal
Atomic # 8 Polarization: -32.55 SS G_CDS: -1.34 Total: -33.89 kcal
Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal
Total: -78.32 4.84 -73.48 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001111542083.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.777 kcal
(2) G-P(sol) polarization free energy of solvation -78.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds