Wall clock time and date at job start Tue Mar 31 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46961 * 80.85948 * 3 2 1 5 5 C 1.53002 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47164 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99547 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99846 * 179.97438 * 6 5 4 9 9 C 1.47154 * 120.99048 * 359.97438 * 8 6 5 10 10 C 1.53294 * 108.37324 * 230.61527 * 9 8 6 11 11 H 1.09001 * 109.51295 * 67.57908 * 10 9 8 12 12 C 1.53001 * 109.50980 * 187.67077 * 10 9 8 13 13 O 1.42968 * 109.22952 * 307.64777 * 10 9 8 14 14 C 1.42897 * 114.20267 * 62.49568 * 13 10 9 15 15 C 1.52996 * 109.54816 * 177.77735 * 14 13 10 16 16 C 1.53190 * 109.35347 * 300.93873 * 15 14 13 17 17 N 1.46929 * 108.77371 * 305.42377 * 16 15 14 18 18 C 1.36937 * 120.64653 * 233.65558 * 17 16 15 19 19 H 1.08007 * 119.99429 * 27.69077 * 18 17 16 20 20 C 1.38805 * 120.00276 * 207.68769 * 18 17 16 21 21 N 1.31617 * 120.00093 * 17.37488 * 20 18 17 22 22 Si 1.86803 * 120.00297 * 197.37256 * 20 18 17 23 23 H 1.48498 * 109.46915 * 90.00086 * 22 20 18 24 24 H 1.48499 * 109.47322 * 210.00199 * 22 20 18 25 25 H 1.48501 * 109.46909 * 330.00397 * 22 20 18 26 26 C 1.46934 * 118.71346 * 53.67536 * 17 16 15 27 27 C 1.52978 * 109.56737 * 57.47232 * 14 13 10 28 28 C 1.47152 * 120.98516 * 179.97438 * 8 6 5 29 29 H 4.44645 * 5.63307 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47342 * 320.85892 * 3 2 1 31 31 H 1.09001 * 109.46526 * 200.85777 * 3 2 1 32 32 H 1.09006 * 109.47108 * 60.00044 * 4 3 2 33 33 H 1.09000 * 109.47353 * 299.99871 * 4 3 2 34 34 H 1.09001 * 109.47370 * 60.00137 * 5 4 3 35 35 H 1.09000 * 109.47200 * 300.00251 * 5 4 3 36 36 H 1.09009 * 109.67889 * 350.33638 * 9 8 6 37 37 H 1.09001 * 109.68175 * 110.89212 * 9 8 6 38 38 H 1.09002 * 109.47239 * 60.00456 * 12 10 9 39 39 H 1.09005 * 109.47049 * 179.97438 * 12 10 9 40 40 H 1.08991 * 109.47495 * 300.00134 * 12 10 9 41 41 H 1.08995 * 109.49517 * 180.97230 * 15 14 13 42 42 H 1.09009 * 109.49114 * 60.89968 * 15 14 13 43 43 H 1.08999 * 109.59326 * 65.21175 * 16 15 14 44 44 H 1.09000 * 109.59068 * 185.64283 * 16 15 14 45 45 H 0.96996 * 120.00891 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.58497 * 66.11075 * 26 17 16 47 47 H 1.08996 * 109.59033 * 186.53781 * 26 17 16 48 48 H 1.09006 * 109.49188 * 299.09384 * 27 14 13 49 49 H 1.08997 * 109.51397 * 179.03233 * 27 14 13 50 50 H 1.08996 * 109.67879 * 9.77712 * 28 8 6 51 51 H 1.08998 * 109.68242 * 249.23030 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2283 -1.4242 5 6 4.6861 -0.2269 -1.4243 6 6 5.1885 -0.4531 -2.8270 7 8 4.4004 -0.6002 -3.7370 8 7 6.5136 -0.4907 -3.0703 9 6 7.4890 -0.3130 -1.9828 10 6 8.4989 0.7583 -2.4097 11 1 8.0003 1.7258 -2.4686 12 6 9.6325 0.8292 -1.3847 13 8 9.0332 0.4176 -3.6913 14 6 8.0624 0.3781 -4.7391 15 6 8.7540 0.0596 -6.0661 16 6 9.8078 1.1320 -6.3596 17 7 9.1641 2.4520 -6.3155 18 6 9.2759 3.3188 -7.3698 19 1 9.4229 2.9370 -8.3694 20 6 9.2004 4.6878 -7.1538 21 7 9.3650 5.1729 -5.9414 22 14 8.8653 5.8420 -8.5839 23 1 7.4003 6.0354 -8.7310 24 1 9.5140 7.1524 -8.3250 25 1 9.4150 5.2555 -9.8325 26 6 8.3983 2.8243 -5.1180 27 6 7.3598 1.7334 -4.8380 28 6 7.0280 -0.7106 -4.4313 29 1 -1.0500 0.0002 -0.0001 30 1 3.0097 -0.7962 0.6486 31 1 3.0088 0.9612 0.3659 32 1 2.7923 0.5687 -2.0729 33 1 2.7932 -1.1887 -1.7901 34 1 5.0502 -1.0236 -0.7755 35 1 5.0486 0.7337 -1.0585 36 1 6.9743 0.0077 -1.0769 37 1 8.0076 -1.2536 -1.7976 38 1 10.1318 -0.1380 -1.3276 39 1 10.3505 1.5908 -1.6891 40 1 9.2233 1.0851 -0.4075 41 1 8.0153 0.0467 -6.8674 42 1 9.2364 -0.9158 -5.9999 43 1 10.5963 1.0848 -5.6086 44 1 10.2327 0.9657 -7.3495 45 1 9.3119 6.1295 -5.7903 46 1 9.0726 2.9142 -4.2664 47 1 7.8928 3.7749 -5.2884 48 1 6.8507 1.9486 -3.8984 49 1 6.6316 1.7078 -5.6486 50 1 6.2085 -0.6513 -5.1475 51 1 7.4987 -1.6919 -4.4918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111542083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:46 Heat of formation + Delta-G solvation = -29.700803 kcal Electronic energy + Delta-G solvation = -30460.842813 eV Core-core repulsion = 26554.360161 eV Total energy + Delta-G solvation = -3906.482652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.86991 -40.12721 -37.96701 -36.54599 -35.74553 -35.12282 -33.38053 -33.02595 -31.82604 -31.23178 -29.59018 -28.08759 -27.20162 -25.83905 -24.22402 -23.53536 -22.87151 -22.00613 -20.54780 -19.99812 -19.06353 -18.87238 -18.04129 -17.27093 -17.16847 -16.84872 -16.73641 -16.21633 -15.80298 -15.65086 -15.34646 -15.24559 -14.94050 -14.89503 -14.60560 -14.50699 -13.84475 -13.64316 -13.48702 -13.30237 -13.26587 -13.13674 -13.06437 -12.91730 -12.81249 -12.63551 -12.56884 -12.36014 -12.23441 -12.01492 -11.95246 -11.89274 -11.74241 -11.42097 -11.28985 -11.14928 -10.96197 -10.78290 -10.72657 -10.53369 -9.48800 -8.68339 -7.88628 -5.33255 1.43898 1.45921 1.54326 1.59619 1.79427 1.93429 1.99215 2.49096 2.73496 3.25331 3.44046 3.55100 3.61233 3.70768 3.83915 3.91305 3.96619 4.05938 4.12046 4.18534 4.27172 4.38777 4.42426 4.46254 4.55724 4.64502 4.65522 4.66412 4.69119 4.73368 4.78985 4.82234 4.85036 4.94264 4.97864 5.05783 5.13397 5.17896 5.19220 5.21503 5.30547 5.33846 5.36242 5.40929 5.46573 5.62764 5.70355 6.36361 6.36823 6.41180 6.72966 7.13126 7.13549 7.85323 8.38066 9.17777 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003097 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.522248 B = 9039.915034 C =10035.272745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.009 4.009 4 C -0.094 4.094 5 C -0.131 4.131 6 C 0.506 3.494 7 O -0.589 6.589 8 N -0.614 5.614 9 C 0.083 3.917 10 C 0.058 3.942 11 H 0.045 0.955 12 C -0.134 4.134 13 O -0.374 6.374 14 C 0.127 3.873 15 C -0.111 4.111 16 C 0.150 3.850 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.195 3.805 27 C -0.143 4.143 28 C 0.097 3.903 29 H 0.238 0.762 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.249 0.751 46 H -0.001 1.001 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.077 0.923 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 -14.699 16.922 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.132 4.132 5 C -0.170 4.170 6 C 0.297 3.703 7 O -0.470 6.470 8 N -0.346 5.346 9 C -0.038 4.038 10 C 0.000 4.000 11 H 0.063 0.937 12 C -0.192 4.192 13 O -0.293 6.293 14 C 0.086 3.914 15 C -0.150 4.150 16 C 0.024 3.976 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.069 3.931 27 C -0.183 4.183 28 C -0.027 4.027 29 H 0.255 0.745 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.096 0.904 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.902 -14.667 16.451 23.413 hybrid contribution -0.568 1.289 -1.144 1.815 sum -8.469 -13.378 15.306 22.023 Atomic orbital electron populations 1.25708 0.97131 1.00976 1.00134 1.23861 0.95899 1.00782 1.01078 1.18848 0.83700 1.05079 0.96923 1.21175 0.93739 1.02132 0.96181 1.21777 0.96388 1.06849 0.91997 1.21527 0.81129 0.74959 0.92702 1.90687 1.55784 1.51935 1.48565 1.48282 1.06036 1.71285 1.09015 1.22738 0.90383 1.00498 0.90230 1.22672 0.96076 0.96805 0.84425 0.93725 1.21698 0.96921 1.03094 0.97464 1.87987 1.34444 1.90228 1.16655 1.21505 0.88384 0.92901 0.88574 1.21892 0.99254 0.99795 0.94050 1.20892 0.93377 0.84761 0.98528 1.44312 1.57701 1.14354 1.16955 1.19542 1.44197 0.87539 0.87916 0.91525 1.25785 1.01547 0.98619 0.98790 1.70188 1.54060 1.11863 1.21926 0.85290 0.77532 0.78177 0.79627 1.21541 1.21968 1.19177 1.20311 0.90770 0.94671 0.87321 1.22448 0.98572 0.97280 0.99955 1.22179 0.97083 0.98724 0.84696 0.74501 0.86982 0.87768 0.93539 0.92508 0.84829 0.86220 0.85210 0.88450 0.90623 0.93813 0.87842 0.91097 0.89043 0.96497 0.92702 0.94185 0.98245 0.93665 0.92469 0.93668 0.90445 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.80 19.25 74.32 1.43 -2.37 16 2 C -0.22 -3.98 13.34 31.12 0.42 -3.56 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.05 16 4 C -0.09 -1.65 4.46 30.59 0.14 -1.52 16 5 C -0.13 -1.83 4.07 29.85 0.12 -1.71 16 6 C 0.51 12.63 7.71 87.66 0.68 13.30 16 7 O -0.59 -20.49 15.45 -3.03 -0.05 -20.54 16 8 N -0.61 -14.54 2.52 -817.34 -2.06 -16.60 16 9 C 0.08 1.38 5.83 86.35 0.50 1.88 16 10 C 0.06 1.42 3.01 30.69 0.09 1.51 16 11 H 0.04 1.30 6.29 -2.39 -0.02 1.28 16 12 C -0.13 -2.52 9.57 71.98 0.69 -1.84 16 13 O -0.37 -12.06 8.65 -148.98 -1.29 -13.35 16 14 C 0.13 4.23 0.68 -10.71 -0.01 4.23 16 15 C -0.11 -3.80 5.10 30.66 0.16 -3.65 16 16 C 0.15 6.45 6.28 86.36 0.54 7.00 16 17 N -0.61 -31.85 2.99 -699.06 -2.09 -33.94 16 18 C -0.26 -14.88 9.59 84.03 0.81 -14.07 16 19 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 20 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 21 N -0.93 -56.66 11.19 21.65 0.24 -56.42 16 22 Si 0.97 46.19 29.59 68.60 2.03 48.22 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.20 9.84 5.08 86.36 0.44 10.28 16 27 C -0.14 -5.80 4.33 30.65 0.13 -5.67 16 28 C 0.10 2.74 5.30 86.35 0.46 3.20 16 29 H 0.24 2.40 7.80 -4.42 -0.03 2.36 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.13 0.89 8.02 -2.39 -0.02 0.88 16 35 H 0.12 1.19 7.66 -2.39 -0.02 1.17 16 36 H 0.13 1.13 6.05 -2.38 -0.01 1.11 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 44 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.00 -0.03 7.83 -2.38 -0.02 -0.05 16 47 H 0.04 2.61 6.03 -2.39 -0.01 2.60 16 48 H 0.06 2.17 6.15 -2.38 -0.01 2.16 16 49 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.08 2.54 7.07 -2.39 -0.02 2.52 16 51 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -78.32 398.40 4.84 -73.48 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.89 Total: 14.66 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 7.17 Total: 4.49 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.91 Total: -106.96 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.34 Total: -33.89 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.32 4.84 -73.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111542083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.777 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds