Wall clock time and date at job start Tue Mar 31 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 C 1.47201 * 109.46932 * 240.00657 * 2 1 3 5 5 C 2.64606 * 109.46814 * 240.00523 * 2 1 3 6 6 C 4.07801 * 109.46852 * 240.00602 * 2 1 3 7 7 O 1.21620 * 119.99906 * 235.63893 * 6 5 4 8 8 N 1.34778 * 120.00151 * 55.64061 * 6 5 4 9 9 C 1.47156 * 120.98684 * 359.72005 * 8 6 5 10 10 C 1.52840 * 108.61575 * 230.52247 * 9 8 6 11 11 H 1.08996 * 109.35164 * 67.80174 * 10 9 8 12 12 C 1.53000 * 109.62336 * 187.87038 * 10 9 8 13 13 O 1.42968 * 109.31644 * 307.91415 * 10 9 8 14 14 C 1.42896 * 114.20161 * 62.34870 * 13 10 9 15 15 C 1.52986 * 109.56531 * 57.45816 * 14 13 10 16 16 C 1.53197 * 109.34806 * 59.05739 * 15 14 13 17 17 N 1.46934 * 108.77769 * 54.56765 * 16 15 14 18 18 C 1.36936 * 120.63992 * 126.30165 * 17 16 15 19 19 H 1.07997 * 120.00169 * 207.71004 * 18 17 16 20 20 C 1.38812 * 120.00004 * 27.71121 * 18 17 16 21 21 N 1.31617 * 120.00154 * 17.35142 * 20 18 17 22 22 Si 1.86807 * 119.99990 * 197.35553 * 20 18 17 23 23 H 1.48494 * 109.47079 * 59.99835 * 22 20 18 24 24 H 1.48495 * 109.46811 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46978 * 299.99779 * 22 20 18 26 26 C 1.46923 * 118.71792 * 306.33078 * 17 16 15 27 27 C 1.52991 * 109.55254 * 177.76937 * 14 13 10 28 28 C 1.47158 * 120.98765 * 179.97438 * 8 6 5 29 29 H 1.09003 * 109.46784 * 299.99578 * 1 2 3 30 30 H 1.09001 * 109.46696 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47158 * 59.99328 * 1 2 3 32 32 H 1.08995 * 109.47517 * 120.00411 * 2 1 3 33 33 H 1.09003 * 109.46982 * 60.00543 * 3 2 1 34 34 H 1.09001 * 109.47413 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47689 * 300.00347 * 3 2 1 36 36 H 1.08996 * 109.67891 * 350.30573 * 9 8 6 37 37 H 1.08995 * 109.68052 * 110.86278 * 9 8 6 38 38 H 1.08997 * 109.47562 * 179.97438 * 12 10 9 39 39 H 1.08998 * 109.47139 * 299.93294 * 12 10 9 40 40 H 1.09006 * 109.47172 * 59.92532 * 12 10 9 41 41 H 1.08998 * 109.49172 * 179.01261 * 15 14 13 42 42 H 1.08994 * 109.49137 * 299.09352 * 15 14 13 43 43 H 1.09000 * 109.58442 * 294.78711 * 16 15 14 44 44 H 1.08998 * 109.59126 * 174.35941 * 16 15 14 45 45 H 0.96996 * 120.00284 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.58383 * 293.88455 * 26 17 16 47 47 H 1.09000 * 109.58620 * 173.45595 * 26 17 16 48 48 H 1.09000 * 109.49489 * 60.89816 * 27 14 13 49 49 H 1.08997 * 109.49482 * 180.97766 * 27 14 13 50 50 H 1.09004 * 109.67151 * 249.25126 * 28 8 6 51 51 H 1.09002 * 109.67705 * 9.79187 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2020 5 6 2.4119 -1.2472 -2.1607 6 6 2.8892 -1.9221 -3.3299 7 8 3.9872 -2.4451 -3.3246 8 7 2.1217 -1.9777 -4.4364 9 6 0.7874 -1.3577 -4.4649 10 6 -0.2174 -2.3858 -4.9839 11 1 -0.3259 -3.1861 -4.2519 12 6 -1.5724 -1.7118 -5.2089 13 8 0.2566 -2.9289 -6.2185 14 6 1.4954 -3.6330 -6.1115 15 6 1.3550 -4.7648 -5.0918 16 6 0.2411 -5.7164 -5.5399 17 7 0.5270 -6.1681 -6.9085 18 6 0.5710 -7.5037 -7.2077 19 1 1.1851 -7.8543 -8.0240 20 6 -0.1737 -8.4069 -6.4618 21 7 -1.1657 -7.9794 -5.7098 22 14 0.2320 -10.2293 -6.5253 23 1 1.6258 -10.4426 -6.0596 24 1 -0.7039 -10.9756 -5.6465 25 1 0.0960 -10.7183 -7.9209 26 6 0.7655 -5.1592 -7.9496 27 6 1.8737 -4.2138 -7.4754 28 6 2.5908 -2.6650 -5.6502 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 0.5059 -1.0462 -3.4591 37 1 0.7987 -0.4927 -5.1280 38 1 -2.2868 -2.4470 -5.5793 39 1 -1.9331 -1.2979 -4.2673 40 1 -1.4627 -0.9105 -5.9396 41 1 2.2952 -5.3120 -5.0240 42 1 1.1058 -4.3468 -4.1165 43 1 -0.7155 -5.1942 -5.5199 44 1 0.2043 -6.5765 -4.8714 45 1 -1.6859 -8.6105 -5.1883 46 1 -0.1486 -4.5920 -8.1248 47 1 1.0749 -5.6516 -8.8715 48 1 1.9934 -3.4040 -8.1951 49 1 2.8099 -4.7653 -7.3889 50 1 2.7878 -1.9329 -6.4334 51 1 3.5021 -3.2203 -5.4284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111544638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:55 Heat of formation + Delta-G solvation = -26.507758 kcal Electronic energy + Delta-G solvation = -30517.247555 eV Core-core repulsion = 26610.903364 eV Total energy + Delta-G solvation = -3906.344191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.98749 -40.14012 -38.02207 -37.37316 -35.90789 -35.19314 -33.34327 -32.92368 -31.84391 -31.25837 -28.90331 -28.04702 -27.54025 -26.36431 -24.54778 -24.17506 -23.17338 -22.54014 -21.44270 -20.44215 -19.26164 -18.87164 -17.81930 -17.15072 -17.06620 -16.86899 -16.56856 -16.11651 -15.88786 -15.65983 -15.36603 -15.26132 -14.98237 -14.93186 -14.68454 -14.33646 -13.94371 -13.47014 -13.35364 -13.24945 -13.15607 -13.06593 -12.97283 -12.93836 -12.86874 -12.64219 -12.57730 -12.42355 -12.33540 -12.28863 -12.04626 -11.97616 -11.78058 -11.74713 -11.45504 -11.37372 -11.22763 -11.08265 -10.86170 -10.53368 -9.67395 -8.68389 -7.88309 -5.32814 0.38169 1.11858 1.44394 1.47508 1.53824 1.74696 2.34285 2.49531 2.64480 2.85329 3.25784 3.50355 3.63100 3.74775 3.80989 3.86603 3.98914 4.04223 4.05441 4.17135 4.17454 4.34648 4.36705 4.43000 4.48607 4.55776 4.63548 4.66123 4.68702 4.81007 4.81979 4.90561 4.93647 4.94306 4.95793 4.99993 5.08284 5.08829 5.12445 5.23188 5.28996 5.32788 5.33883 5.36693 5.44992 5.62929 5.68387 6.03870 6.12520 6.29449 6.38021 6.77582 7.13500 7.85440 8.38476 9.18209 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.003118 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.934058 B = 8978.935794 C = 9239.535420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 C -0.143 4.143 4 C -0.036 4.036 5 C -0.273 4.273 6 C 0.630 3.370 7 O -0.570 6.570 8 N -0.598 5.598 9 C 0.087 3.913 10 C 0.065 3.935 11 H 0.042 0.958 12 C -0.133 4.133 13 O -0.368 6.368 14 C 0.124 3.876 15 C -0.147 4.147 16 C 0.197 3.803 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.069 0.931 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.149 3.851 27 C -0.109 4.109 28 C 0.097 3.903 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.049 0.951 43 H -0.001 1.001 44 H 0.045 0.955 45 H 0.249 0.751 46 H 0.017 0.983 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.075 0.925 50 H 0.102 0.898 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 22.896 9.126 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 C -0.200 4.200 4 C -0.039 4.039 5 C -0.275 4.275 6 C 0.421 3.579 7 O -0.451 6.451 8 N -0.329 5.329 9 C -0.035 4.035 10 C 0.006 3.994 11 H 0.060 0.940 12 C -0.190 4.190 13 O -0.287 6.287 14 C 0.084 3.916 15 C -0.186 4.186 16 C 0.071 3.929 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.087 0.913 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.024 3.976 27 C -0.148 4.148 28 C -0.025 4.025 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.017 0.983 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.035 0.965 47 H 0.076 0.924 48 H 0.114 0.886 49 H 0.094 0.906 50 H 0.120 0.880 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.195 22.548 8.987 24.372 hybrid contribution 0.211 -1.688 0.256 1.721 sum 2.405 20.860 9.243 22.943 Atomic orbital electron populations 1.21882 0.91310 1.02853 1.04239 1.18904 0.97358 0.95861 0.89385 1.21848 1.01361 0.92676 1.04102 1.23499 0.94399 0.91780 0.94213 1.20401 1.04640 1.04708 0.97786 1.15043 0.83532 0.78415 0.80952 1.90808 1.22231 1.48431 1.83674 1.48016 1.18111 1.54480 1.12254 1.22567 0.80122 0.96432 1.04348 1.22495 0.95215 0.94650 0.87019 0.94029 1.21685 0.92635 1.00671 1.04045 1.87995 1.38301 1.71374 1.31076 1.21591 0.83947 0.89563 0.96495 1.22489 1.00522 0.97722 0.97887 1.20277 0.92116 0.94259 0.86277 1.44288 1.82864 1.01783 1.04282 1.19518 1.20155 0.83572 1.16044 0.91335 1.25803 0.95653 1.02186 1.01147 1.70188 1.20014 1.34643 1.33269 0.85358 0.77168 0.80334 0.77722 1.20728 1.22029 1.19785 1.20911 0.95430 0.89929 0.91353 1.21900 0.99378 0.99286 0.94225 1.22428 0.97898 0.96108 0.86094 0.88790 0.92748 0.91635 0.86625 0.88666 0.92686 0.91978 0.87615 0.87948 0.93067 0.88404 0.90203 0.93062 0.93204 0.98341 0.93632 0.94222 0.96455 0.92378 0.88598 0.90606 0.87992 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.15 71.98 0.66 -0.58 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.14 -1.16 9.15 71.98 0.66 -0.50 16 4 C -0.04 -0.74 12.53 31.12 0.39 -0.35 16 5 C -0.27 -7.38 11.62 30.01 0.35 -7.03 16 6 C 0.63 20.62 7.56 85.49 0.65 21.26 16 7 O -0.57 -22.90 16.55 -4.09 -0.07 -22.97 16 8 N -0.60 -17.20 2.53 -827.17 -2.09 -19.29 16 9 C 0.09 1.96 5.79 86.20 0.50 2.46 16 10 C 0.06 1.78 3.00 30.54 0.09 1.87 16 11 H 0.04 1.37 6.29 -2.39 -0.02 1.36 16 12 C -0.13 -2.81 9.57 71.98 0.69 -2.12 16 13 O -0.37 -12.39 8.65 -148.98 -1.29 -13.67 16 14 C 0.12 4.27 0.68 -10.70 -0.01 4.27 16 15 C -0.15 -6.15 4.33 30.66 0.13 -6.01 16 16 C 0.20 10.08 5.08 86.36 0.44 10.52 16 17 N -0.61 -31.84 2.99 -699.08 -2.09 -33.93 16 18 C -0.26 -14.92 9.59 84.03 0.81 -14.11 16 19 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 20 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 21 N -0.93 -57.05 11.19 21.65 0.24 -56.81 16 22 Si 0.97 46.26 29.59 68.60 2.03 48.29 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.15 6.38 6.28 86.36 0.54 6.92 16 27 C -0.11 -3.69 5.10 30.66 0.16 -3.54 16 28 C 0.10 2.89 5.30 86.35 0.46 3.34 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 2.02 6.43 -2.39 -0.02 2.01 16 37 H 0.10 1.86 8.13 -2.39 -0.02 1.84 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 2.03 6.15 -2.39 -0.01 2.02 16 43 H 0.00 -0.08 7.83 -2.39 -0.02 -0.10 16 44 H 0.05 2.67 6.03 -2.39 -0.01 2.65 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 46 H 0.02 0.78 7.83 -2.39 -0.02 0.76 16 47 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 48 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 50 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 51 H 0.09 2.90 7.07 -2.39 -0.02 2.88 16 Total: -1.00 -75.43 399.61 4.52 -70.92 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.90 Total: 13.70 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 6.88 Total: 13.76 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -3.94 Total: -110.03 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.36 Total: -36.64 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.43 4.52 -70.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111544638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.408 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds