Wall clock time and date at job start Tue Mar 31 2020 18:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47097 * 173.09816 * 3 2 1 5 5 C 1.52994 * 109.47374 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47355 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46866 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00414 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99662 * 180.02562 * 7 6 5 10 10 C 1.47155 * 121.05608 * 0.02562 * 9 7 6 11 11 C 1.53291 * 108.49670 * 128.78730 * 10 9 7 12 12 H 1.09007 * 109.50920 * 293.06245 * 11 10 9 13 13 C 1.52997 * 109.51784 * 172.95997 * 11 10 9 14 14 O 1.43087 * 109.21895 * 52.98258 * 11 10 9 15 15 C 1.42062 * 114.40171 * 298.85720 * 14 11 10 16 16 C 1.54525 * 110.32743 * 182.55269 * 15 14 11 17 17 C 1.55022 * 101.56847 * 83.95127 * 16 15 14 18 18 N 1.47493 * 104.89543 * 36.35515 * 17 16 15 19 19 C 1.36937 * 125.65696 * 155.94471 * 18 17 16 20 20 H 1.08001 * 119.99255 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00434 * 0.03058 * 19 18 17 22 22 N 1.31613 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47306 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47032 * 119.99540 * 23 21 19 26 26 H 1.48494 * 109.47369 * 239.99736 * 23 21 19 27 27 C 1.47186 * 108.67198 * 335.98457 * 18 17 16 28 28 C 1.47286 * 121.05623 * 180.02562 * 9 7 6 29 29 H 4.44650 * 5.63354 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46960 * 53.09767 * 3 2 1 31 31 H 1.09003 * 109.47251 * 293.09957 * 3 2 1 32 32 H 1.08999 * 109.47047 * 59.99650 * 4 3 2 33 33 H 1.09003 * 109.47185 * 300.00182 * 4 3 2 34 34 H 1.08999 * 109.47322 * 59.99815 * 5 4 3 35 35 H 1.09003 * 109.47111 * 300.00225 * 5 4 3 36 36 H 1.09004 * 109.46587 * 60.00448 * 6 5 4 37 37 H 1.08996 * 109.47093 * 300.00438 * 6 5 4 38 38 H 1.09002 * 109.63437 * 248.48524 * 10 9 7 39 39 H 1.09003 * 109.63554 * 8.88510 * 10 9 7 40 40 H 1.09004 * 109.46807 * 60.00174 * 13 11 10 41 41 H 1.08998 * 109.47189 * 179.97438 * 13 11 10 42 42 H 1.08993 * 109.47217 * 300.00192 * 13 11 10 43 43 H 1.09002 * 111.01565 * 325.86791 * 16 15 14 44 44 H 1.09000 * 111.01102 * 202.02995 * 16 15 14 45 45 H 1.08993 * 110.35347 * 155.21204 * 17 16 15 46 46 H 1.09002 * 110.35424 * 277.50776 * 17 16 15 47 47 H 0.97003 * 119.99670 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.90608 * 120.87716 * 27 18 17 49 49 H 1.09002 * 109.90468 * 241.95008 * 27 18 17 50 50 H 1.09004 * 109.64465 * 109.65341 * 28 9 7 51 51 H 1.09003 * 109.80904 * 349.13577 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4329 -0.1733 5 6 4.6853 1.4336 -0.1740 6 6 5.1946 2.8658 -0.3480 7 6 6.7016 2.8663 -0.3492 8 8 7.3085 1.8238 -0.2229 9 7 7.3750 4.0254 -0.4897 10 6 6.6622 5.3036 -0.6429 11 6 7.2247 6.2995 0.3777 12 1 6.9693 5.9713 1.3854 13 6 6.6260 7.6844 0.1241 14 8 8.6478 6.3605 0.2413 15 6 9.3137 5.1287 0.4808 16 6 10.8437 5.3156 0.3715 17 6 11.1961 5.8306 1.7906 18 7 10.2913 5.0973 2.6956 19 6 10.5156 4.8550 4.0246 20 1 9.7881 4.3055 4.6035 21 6 11.6779 5.3156 4.6276 22 7 12.5647 5.9849 3.9220 23 14 11.9834 4.9857 6.4407 24 1 10.8432 4.2184 7.0032 25 1 13.2335 4.1994 6.5969 26 1 12.1168 6.2761 7.1631 27 6 9.1078 4.6684 1.9328 28 6 8.8476 4.0528 -0.4948 29 1 -1.0503 -0.0005 -0.0001 30 1 3.0096 -0.6163 -0.8218 31 1 3.0095 -0.4024 0.9453 32 1 2.7916 2.0498 0.6484 33 1 2.7918 1.8359 -1.1186 34 1 5.0485 0.8168 -0.9960 35 1 5.0492 1.0304 0.7711 36 1 4.8314 3.4829 0.4739 37 1 4.8307 3.2685 -1.2931 38 1 6.8131 5.6885 -1.6515 39 1 5.5976 5.1531 -0.4638 40 1 5.5417 7.6354 0.2244 41 1 7.0261 8.3917 0.8505 42 1 6.8833 8.0126 -0.8829 43 1 11.0938 6.0576 -0.3868 44 1 11.3396 4.3670 0.1657 45 1 12.2355 5.6045 2.0287 46 1 11.0148 6.9031 1.8606 47 1 13.3771 6.3065 4.3433 48 1 9.0169 3.5828 1.9680 49 1 8.2116 5.1294 2.3480 50 1 9.2063 4.2867 -1.4972 51 1 9.2362 3.0831 -0.1837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131649870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:09 Heat of formation + Delta-G solvation = -5.915477 kcal Electronic energy + Delta-G solvation = -29737.639120 eV Core-core repulsion = 25832.187877 eV Total energy + Delta-G solvation = -3905.451243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.62634 -38.87762 -36.42629 -36.32001 -34.61077 -33.53111 -33.07652 -31.33341 -30.39737 -29.31813 -28.27784 -26.51537 -26.09232 -24.92999 -23.44509 -21.86417 -21.52813 -20.30895 -19.61258 -18.75575 -18.28725 -17.17627 -16.99916 -16.55891 -16.29346 -15.90279 -15.26029 -14.75894 -14.70768 -14.52574 -14.17359 -14.12798 -13.82152 -13.44962 -13.38481 -13.10934 -12.78498 -12.56064 -12.34371 -12.29445 -12.10158 -11.94030 -11.80615 -11.59863 -11.54957 -11.42283 -11.07492 -10.94150 -10.90437 -10.86139 -10.50216 -10.47335 -10.38020 -10.33777 -10.06818 -9.95764 -9.67261 -9.55677 -9.53093 -8.63117 -8.35234 -6.81088 -5.63292 -3.04604 2.50659 2.55233 2.62568 2.89303 3.41182 3.46553 3.49166 3.83485 4.02291 4.38861 4.49649 4.59134 4.65639 4.67163 4.86561 4.98400 5.00885 5.05146 5.13165 5.19847 5.21904 5.31454 5.40485 5.42095 5.48099 5.51149 5.53949 5.57182 5.61105 5.69418 5.70316 5.74572 5.87716 5.93791 5.96949 6.03085 6.09987 6.13437 6.27169 6.32819 6.47950 6.54690 6.63417 6.70728 7.32411 7.36308 7.58025 7.64383 7.64837 7.87242 8.16200 8.37282 9.23966 9.84121 10.49329 11.40780 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.002753 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.269806 B =10168.102562 C =11357.133242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.139 4.139 7 C 0.514 3.486 8 O -0.538 6.538 9 N -0.614 5.614 10 C 0.080 3.920 11 C 0.067 3.933 12 H 0.068 0.932 13 C -0.141 4.141 14 O -0.353 6.353 15 C 0.095 3.905 16 C -0.130 4.130 17 C 0.157 3.843 18 N -0.600 5.600 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.122 3.878 28 C 0.098 3.902 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.017 0.983 47 H 0.251 0.749 48 H 0.029 0.971 49 H 0.023 0.977 50 H 0.071 0.929 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.243 -3.454 -13.243 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.179 4.179 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.348 5.348 10 C -0.044 4.044 11 C 0.009 3.991 12 H 0.086 0.914 13 C -0.198 4.198 14 O -0.272 6.272 15 C 0.054 3.946 16 C -0.169 4.169 17 C 0.033 3.967 18 N -0.327 5.327 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.004 4.004 28 C -0.024 4.024 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.035 0.965 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.089 0.911 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.660 -3.822 -13.052 23.091 hybrid contribution -0.324 -0.176 0.998 1.064 sum -18.985 -3.998 -12.054 22.841 Atomic orbital electron populations 1.24912 0.95997 1.00993 1.01607 1.23243 0.94672 1.00292 1.00062 1.18781 0.84463 0.98351 1.03654 1.21554 0.95358 0.95570 1.02647 1.21363 0.93822 0.95141 1.04007 1.21694 0.92065 1.00003 1.04127 1.20689 0.90192 0.82981 0.75839 1.90706 1.70344 1.31088 1.49341 1.48239 1.07192 1.06721 1.72682 1.22510 0.97074 0.84192 1.00603 1.22451 0.82908 0.95697 0.98079 0.91408 1.21690 0.99848 0.95180 1.03104 1.87867 1.17047 1.31698 1.90621 1.22318 0.94498 0.83526 0.94240 1.23010 0.90317 1.01653 1.01935 1.21945 0.98321 0.93522 0.82954 1.44507 1.17520 1.64023 1.06612 1.19103 1.02837 1.29256 0.83662 0.90609 1.24779 0.97072 1.00422 0.98414 1.69802 1.10807 1.42373 1.34013 0.85996 0.77733 0.77362 0.84407 1.20574 1.21697 1.21757 1.21711 0.91801 0.97019 0.89857 1.22227 0.78951 1.01426 0.99818 0.76756 0.89402 0.89289 0.91401 0.91535 0.90887 0.90693 0.88835 0.88997 0.90601 0.89122 0.91222 0.91160 0.91784 0.91039 0.90583 0.87484 0.96462 0.93772 0.95298 0.95915 0.91068 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.18 -1.63 13.34 -37.12 -0.50 -2.13 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.81 5.17 -26.74 -0.14 -0.95 16 5 C -0.11 -0.93 4.50 -26.73 -0.12 -1.06 16 6 C -0.14 -1.26 4.07 -27.88 -0.11 -1.37 16 7 C 0.51 7.05 7.71 -10.98 -0.08 6.97 16 8 O -0.54 -9.43 15.47 5.56 0.09 -9.35 16 9 N -0.61 -8.35 2.95 -172.62 -0.51 -8.86 16 10 C 0.08 0.85 5.82 -3.53 -0.02 0.82 16 11 C 0.07 0.90 3.17 -26.58 -0.08 0.81 16 12 H 0.07 1.01 6.25 -51.93 -0.32 0.69 16 13 C -0.14 -1.45 9.57 37.16 0.36 -1.09 16 14 O -0.35 -6.17 9.90 -35.23 -0.35 -6.51 16 15 C 0.09 1.74 0.81 -89.69 -0.07 1.67 16 16 C -0.13 -2.54 6.21 -24.86 -0.15 -2.69 16 17 C 0.16 3.93 5.89 -2.43 -0.01 3.91 16 18 N -0.60 -15.92 3.40 -170.20 -0.58 -16.50 16 19 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -27.21 10.09 55.49 0.56 -26.65 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.12 2.71 6.34 -3.30 -0.02 2.69 16 28 C 0.10 1.55 5.20 -3.85 -0.02 1.53 16 29 H 0.22 1.00 7.80 -54.08 -0.42 0.57 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.09 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.69 6.05 -51.93 -0.31 0.37 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 1.41 8.01 -51.93 -0.42 1.00 16 45 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.03 0.67 7.61 -51.93 -0.40 0.28 16 49 H 0.02 0.51 6.05 -51.93 -0.31 0.20 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.10 1.80 6.84 -51.93 -0.36 1.44 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -34.31 403.27 -9.27 -43.57 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.70 Total: 0.00 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.83 Total: 0.75 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.53 Total: -52.01 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.26 Total: -15.86 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.31 -9.27 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131649870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.658 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds