Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47097 * 173.09816 * 3 2 1 5 5 C 1.52994 * 109.47374 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47355 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46866 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00414 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99662 * 180.02562 * 7 6 5 10 10 C 1.47155 * 121.05608 * 0.02562 * 9 7 6 11 11 C 1.53291 * 108.49670 * 128.78730 * 10 9 7 12 12 H 1.09007 * 109.50920 * 293.06245 * 11 10 9 13 13 C 1.52997 * 109.51784 * 172.95997 * 11 10 9 14 14 O 1.43087 * 109.21895 * 52.98258 * 11 10 9 15 15 C 1.42062 * 114.40171 * 298.85720 * 14 11 10 16 16 C 1.54525 * 110.32743 * 182.55269 * 15 14 11 17 17 C 1.55022 * 101.56847 * 83.95127 * 16 15 14 18 18 N 1.47493 * 104.89543 * 36.35515 * 17 16 15 19 19 C 1.36937 * 125.65696 * 155.94471 * 18 17 16 20 20 H 1.08001 * 119.99255 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00434 * 0.03058 * 19 18 17 22 22 N 1.31613 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47306 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47032 * 119.99540 * 23 21 19 26 26 H 1.48494 * 109.47369 * 239.99736 * 23 21 19 27 27 C 1.47186 * 108.67198 * 335.98457 * 18 17 16 28 28 C 1.47286 * 121.05623 * 180.02562 * 9 7 6 29 29 H 4.44650 * 5.63354 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46960 * 53.09767 * 3 2 1 31 31 H 1.09003 * 109.47251 * 293.09957 * 3 2 1 32 32 H 1.08999 * 109.47047 * 59.99650 * 4 3 2 33 33 H 1.09003 * 109.47185 * 300.00182 * 4 3 2 34 34 H 1.08999 * 109.47322 * 59.99815 * 5 4 3 35 35 H 1.09003 * 109.47111 * 300.00225 * 5 4 3 36 36 H 1.09004 * 109.46587 * 60.00448 * 6 5 4 37 37 H 1.08996 * 109.47093 * 300.00438 * 6 5 4 38 38 H 1.09002 * 109.63437 * 248.48524 * 10 9 7 39 39 H 1.09003 * 109.63554 * 8.88510 * 10 9 7 40 40 H 1.09004 * 109.46807 * 60.00174 * 13 11 10 41 41 H 1.08998 * 109.47189 * 179.97438 * 13 11 10 42 42 H 1.08993 * 109.47217 * 300.00192 * 13 11 10 43 43 H 1.09002 * 111.01565 * 325.86791 * 16 15 14 44 44 H 1.09000 * 111.01102 * 202.02995 * 16 15 14 45 45 H 1.08993 * 110.35347 * 155.21204 * 17 16 15 46 46 H 1.09002 * 110.35424 * 277.50776 * 17 16 15 47 47 H 0.97003 * 119.99670 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.90608 * 120.87716 * 27 18 17 49 49 H 1.09002 * 109.90468 * 241.95008 * 27 18 17 50 50 H 1.09004 * 109.64465 * 109.65341 * 28 9 7 51 51 H 1.09003 * 109.80904 * 349.13577 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4329 -0.1733 5 6 4.6853 1.4336 -0.1740 6 6 5.1946 2.8658 -0.3480 7 6 6.7016 2.8663 -0.3492 8 8 7.3085 1.8238 -0.2229 9 7 7.3750 4.0254 -0.4897 10 6 6.6622 5.3036 -0.6429 11 6 7.2247 6.2995 0.3777 12 1 6.9693 5.9713 1.3854 13 6 6.6260 7.6844 0.1241 14 8 8.6478 6.3605 0.2413 15 6 9.3137 5.1287 0.4808 16 6 10.8437 5.3156 0.3715 17 6 11.1961 5.8306 1.7906 18 7 10.2913 5.0973 2.6956 19 6 10.5156 4.8550 4.0246 20 1 9.7881 4.3055 4.6035 21 6 11.6779 5.3156 4.6276 22 7 12.5647 5.9849 3.9220 23 14 11.9834 4.9857 6.4407 24 1 10.8432 4.2184 7.0032 25 1 13.2335 4.1994 6.5969 26 1 12.1168 6.2761 7.1631 27 6 9.1078 4.6684 1.9328 28 6 8.8476 4.0528 -0.4948 29 1 -1.0503 -0.0005 -0.0001 30 1 3.0096 -0.6163 -0.8218 31 1 3.0095 -0.4024 0.9453 32 1 2.7916 2.0498 0.6484 33 1 2.7918 1.8359 -1.1186 34 1 5.0485 0.8168 -0.9960 35 1 5.0492 1.0304 0.7711 36 1 4.8314 3.4829 0.4739 37 1 4.8307 3.2685 -1.2931 38 1 6.8131 5.6885 -1.6515 39 1 5.5976 5.1531 -0.4638 40 1 5.5417 7.6354 0.2244 41 1 7.0261 8.3917 0.8505 42 1 6.8833 8.0126 -0.8829 43 1 11.0938 6.0576 -0.3868 44 1 11.3396 4.3670 0.1657 45 1 12.2355 5.6045 2.0287 46 1 11.0148 6.9031 1.8606 47 1 13.3771 6.3065 4.3433 48 1 9.0169 3.5828 1.9680 49 1 8.2116 5.1294 2.3480 50 1 9.2063 4.2867 -1.4972 51 1 9.2362 3.0831 -0.1837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131649870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = -26.791878 kcal Electronic energy + Delta-G solvation = -29738.544389 eV Core-core repulsion = 25832.187877 eV Total energy + Delta-G solvation = -3906.356512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.83986 -40.12363 -37.96327 -37.03349 -35.80788 -34.89855 -34.07773 -32.95760 -31.26369 -30.92298 -29.70290 -27.82961 -27.26382 -26.28491 -24.79527 -23.13177 -22.26445 -22.07847 -20.86561 -19.91825 -19.02934 -18.85412 -18.16752 -17.94756 -17.14227 -16.96290 -16.83858 -16.24075 -15.92533 -15.64697 -15.40539 -15.14362 -14.97674 -14.90780 -14.58186 -14.16970 -13.93448 -13.85022 -13.66498 -13.49455 -13.14657 -13.04828 -13.03777 -12.83782 -12.68638 -12.59231 -12.54561 -12.29137 -12.14773 -12.13240 -11.98948 -11.94435 -11.70012 -11.59401 -11.48497 -11.10274 -10.95867 -10.93965 -10.79874 -10.72223 -9.52865 -8.95917 -7.82469 -5.27878 1.42632 1.44356 1.54693 1.59614 1.83274 1.94752 1.95029 2.44551 2.60672 3.26217 3.37158 3.49027 3.61579 3.62568 3.76970 3.87598 3.93339 4.00767 4.04489 4.10241 4.21014 4.36089 4.40070 4.41859 4.47639 4.53526 4.60246 4.63162 4.66654 4.70367 4.76859 4.81000 4.87014 4.90812 4.91947 4.97161 5.02840 5.10792 5.11359 5.23036 5.30086 5.34634 5.35791 5.38795 5.46665 5.57535 5.75058 6.24291 6.32879 6.36251 6.73904 7.05130 7.12717 7.70319 8.35093 9.19625 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.002753 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.269806 B =10168.102562 C =11357.133242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.102 4.102 5 C -0.101 4.101 6 C -0.131 4.131 7 C 0.507 3.493 8 O -0.586 6.586 9 N -0.617 5.617 10 C 0.083 3.917 11 C 0.056 3.944 12 H 0.045 0.955 13 C -0.134 4.134 14 O -0.372 6.372 15 C 0.111 3.889 16 C -0.119 4.119 17 C 0.162 3.838 18 N -0.622 5.622 19 C -0.244 4.244 20 H 0.074 0.926 21 C -0.064 4.064 22 N -0.946 5.946 23 Si 0.983 3.017 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.288 1.288 27 C 0.124 3.876 28 C 0.106 3.894 29 H 0.242 0.758 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.077 0.923 46 H -0.013 1.013 47 H 0.249 0.751 48 H 0.014 0.986 49 H 0.019 0.981 50 H 0.095 0.905 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.118 -2.982 -14.756 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.350 5.350 10 C -0.038 4.038 11 C -0.002 4.002 12 H 0.063 0.937 13 C -0.191 4.191 14 O -0.291 6.291 15 C 0.070 3.930 16 C -0.158 4.158 17 C 0.037 3.963 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.257 4.257 22 N -0.595 5.595 23 Si 0.811 3.189 24 H -0.194 1.194 25 H -0.214 1.214 26 H -0.215 1.215 27 C -0.001 4.001 28 C -0.017 4.017 29 H 0.258 0.742 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.005 0.995 47 H 0.059 0.941 48 H 0.032 0.968 49 H 0.037 0.963 50 H 0.113 0.887 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.578 -3.331 -14.585 26.257 hybrid contribution 0.514 -0.300 1.505 1.618 sum -21.063 -3.631 -13.080 25.059 Atomic orbital electron populations 1.25694 0.96940 0.99969 1.00598 1.23696 0.95498 1.01324 1.01070 1.18822 0.84149 0.98835 1.03772 1.21442 0.93668 0.95396 1.03423 1.21293 0.95043 0.95090 1.02513 1.21778 0.88157 1.00448 1.06673 1.21592 0.92072 0.82144 0.74450 1.90688 1.71657 1.32848 1.51405 1.48376 1.06251 1.08081 1.72335 1.22725 0.98615 0.81767 1.00727 1.22799 0.80848 0.98549 0.98034 0.93743 1.21709 1.01715 0.92533 1.03130 1.87843 1.19738 1.31081 1.90441 1.21995 0.93885 0.84885 0.92220 1.22864 0.91693 1.02417 0.98779 1.21687 0.96590 0.91891 0.86120 1.44812 1.19311 1.64119 1.06611 1.19418 1.03179 1.29584 0.85103 0.90859 1.25661 0.96806 1.00375 1.02852 1.70048 1.10956 1.42937 1.35543 0.84950 0.77708 0.77182 0.79095 1.19432 1.21381 1.21481 1.21801 0.90161 0.95903 0.92268 1.21936 0.81012 0.98947 0.99843 0.74195 0.88943 0.89574 0.91071 0.90235 0.91750 0.92906 0.86942 0.85465 0.88265 0.85143 0.87595 0.93320 0.90473 0.88638 0.89769 0.90546 0.99472 0.94076 0.96796 0.96320 0.88739 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.02 19.25 74.32 1.43 -1.59 16 2 C -0.22 -3.55 13.34 31.13 0.42 -3.13 16 3 C -0.02 -0.27 5.70 28.79 0.16 -0.10 16 4 C -0.10 -1.23 5.17 30.59 0.16 -1.07 16 5 C -0.10 -1.65 4.50 30.59 0.14 -1.51 16 6 C -0.13 -1.96 4.07 29.85 0.12 -1.84 16 7 C 0.51 13.11 7.71 87.66 0.68 13.78 16 8 O -0.59 -20.73 15.47 -3.04 -0.05 -20.78 16 9 N -0.62 -15.47 2.95 -818.44 -2.41 -17.89 16 10 C 0.08 1.44 5.82 86.35 0.50 1.94 16 11 C 0.06 1.37 3.17 30.69 0.10 1.46 16 12 H 0.04 1.29 6.25 -2.38 -0.01 1.28 16 13 C -0.13 -2.35 9.57 71.98 0.69 -1.66 16 14 O -0.37 -12.62 9.90 -148.97 -1.47 -14.09 16 15 C 0.11 4.07 0.81 -10.19 -0.01 4.06 16 16 C -0.12 -4.68 6.21 31.80 0.20 -4.48 16 17 C 0.16 8.45 5.89 86.88 0.51 8.96 16 18 N -0.62 -34.43 3.40 -692.38 -2.36 -36.78 16 19 C -0.24 -14.51 10.28 84.03 0.86 -13.65 16 20 H 0.07 4.26 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.78 5.49 84.86 0.47 -3.32 16 22 N -0.95 -57.87 10.09 21.65 0.22 -57.65 16 23 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 C 0.12 5.69 6.34 86.49 0.55 6.24 16 28 C 0.11 3.26 5.20 86.07 0.45 3.70 16 29 H 0.24 1.60 7.80 -4.40 -0.03 1.57 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.11 1.31 7.67 -2.39 -0.02 1.30 16 37 H 0.13 1.07 8.00 -2.39 -0.02 1.05 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.13 1.23 6.05 -2.39 -0.01 1.22 16 40 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.08 3.15 8.01 -2.39 -0.02 3.13 16 45 H 0.08 4.46 5.88 -2.39 -0.01 4.44 16 46 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 48 H 0.01 0.68 7.61 -2.39 -0.02 0.66 16 49 H 0.02 0.88 6.05 -2.39 -0.01 0.86 16 50 H 0.09 2.47 8.14 -2.38 -0.02 2.46 16 51 H 0.08 2.82 6.84 -2.39 -0.02 2.80 16 Total: -1.00 -79.74 403.27 4.27 -75.48 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.89 Total: 14.68 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 7.42 Total: 7.81 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.55 Total: -112.32 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.52 Total: -34.87 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.74 4.27 -75.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131649870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.685 kcal (2) G-P(sol) polarization free energy of solvation -79.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds