Wall clock time and date at job start Tue Mar 31 2020 18:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47121 * 120.00598 * 2 1 4 4 C 1.50697 * 119.99415 * 359.97438 * 3 2 1 5 5 C 1.32866 * 120.00285 * 179.97438 * 3 2 1 6 6 C 1.50694 * 119.99873 * 186.14675 * 5 3 2 7 7 C 1.50705 * 109.46978 * 125.99767 * 6 5 3 8 8 O 1.21273 * 119.99994 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99596 * 180.02562 * 7 6 5 10 10 C 1.47169 * 121.08623 * 359.97201 * 9 7 6 11 11 C 1.53271 * 108.56742 * 128.78311 * 10 9 7 12 12 H 1.09002 * 109.51841 * 293.03731 * 11 10 9 13 13 C 1.52999 * 109.51088 * 172.93308 * 11 10 9 14 14 O 1.43126 * 109.22433 * 53.00996 * 11 10 9 15 15 C 1.41881 * 114.37743 * 299.11535 * 14 11 10 16 16 C 1.54360 * 110.75126 * 183.31907 * 15 14 11 17 17 C 1.54466 * 102.87416 * 83.65601 * 16 15 14 18 18 N 1.47082 * 107.29399 * 21.49617 * 17 16 15 19 19 C 1.36939 * 125.62619 * 181.00272 * 18 17 16 20 20 H 1.07999 * 119.99856 * 185.22441 * 19 18 17 21 21 C 1.38811 * 120.00129 * 5.22056 * 19 18 17 22 22 N 1.31614 * 120.00071 * 353.05060 * 21 19 18 23 23 Si 1.86802 * 119.99778 * 173.04786 * 21 19 18 24 24 H 1.48506 * 109.47016 * 275.01078 * 23 21 19 25 25 H 1.48498 * 109.47434 * 35.00854 * 23 21 19 26 26 H 1.48502 * 109.47191 * 155.01356 * 23 21 19 27 27 C 1.47567 * 108.74126 * 1.26164 * 18 17 16 28 28 C 1.47332 * 121.07598 * 180.02562 * 9 7 6 29 29 H 1.07996 * 120.00081 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99707 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99462 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47298 * 213.49147 * 4 3 2 33 33 H 1.09000 * 109.47535 * 333.49513 * 4 3 2 34 34 H 1.09002 * 109.47013 * 93.49507 * 4 3 2 35 35 H 1.08005 * 119.99802 * 6.15065 * 5 3 2 36 36 H 1.08994 * 109.47419 * 5.99531 * 6 5 3 37 37 H 1.09003 * 109.47057 * 245.99305 * 6 5 3 38 38 H 1.08995 * 109.61914 * 248.51230 * 10 9 7 39 39 H 1.09004 * 109.61647 * 8.87828 * 10 9 7 40 40 H 1.09006 * 109.46976 * 60.00488 * 13 11 10 41 41 H 1.09005 * 109.46890 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47140 * 300.00138 * 13 11 10 43 43 H 1.09001 * 110.73168 * 325.31269 * 16 15 14 44 44 H 1.09000 * 110.73192 * 202.00493 * 16 15 14 45 45 H 1.08992 * 109.88015 * 262.06862 * 17 16 15 46 46 H 1.09006 * 109.99782 * 140.98740 * 17 16 15 47 47 H 0.97006 * 119.99639 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.37611 * 95.24188 * 27 18 17 49 49 H 1.09005 * 110.37831 * 217.58905 * 27 18 17 50 50 H 1.09000 * 109.67973 * 109.42010 * 28 9 7 51 51 H 1.08997 * 109.71022 * 348.89213 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3931 1.2740 0.0005 6 6 4.1465 2.5715 0.1403 7 6 5.1205 2.4660 1.2855 8 8 5.1950 1.4385 1.9254 9 7 5.9079 3.5139 1.5991 10 6 5.8369 4.7721 0.8389 11 6 5.6665 5.9308 1.8277 12 1 4.6919 5.8572 2.3104 13 6 5.7665 7.2609 1.0783 14 8 6.6978 5.8610 2.8176 15 6 6.6890 4.6706 3.5896 16 6 7.7788 4.7189 4.6817 17 6 7.0902 5.5027 5.8207 18 7 5.6385 5.3929 5.6115 19 6 4.6739 5.9668 6.3960 20 1 3.6309 5.7581 6.2088 21 6 5.0366 6.8168 7.4317 22 7 6.3056 6.9647 7.7479 23 14 3.7235 7.7508 8.3768 24 1 3.3910 9.0048 7.6539 25 1 2.5055 6.9096 8.4945 26 1 4.2302 8.0809 9.7331 27 6 5.3929 4.5570 4.4205 28 6 6.8687 3.4367 2.7134 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8686 -0.9354 0.0004 32 1 1.8717 3.3222 -0.5676 33 1 0.3330 2.4339 -0.4595 34 1 1.1831 2.9253 1.0251 35 1 3.9331 0.3439 -0.0993 36 1 3.4431 3.3810 0.3349 37 1 4.6907 2.7768 -0.7817 38 1 6.7566 4.9085 0.2701 39 1 4.9865 4.7406 0.1577 40 1 4.9836 7.3114 0.3216 41 1 5.6457 8.0844 1.7822 42 1 6.7419 7.3346 0.5975 43 1 8.6599 5.2520 4.3242 44 1 8.0416 3.7131 5.0093 45 1 7.3916 6.5495 5.7852 46 1 7.3593 5.0721 6.7852 47 1 6.5590 7.5590 8.4715 48 1 5.2160 3.5220 4.7131 49 1 4.5449 4.9426 3.8544 50 1 7.8851 3.4101 2.3205 51 1 6.6787 2.5385 3.3009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131674634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:34 Heat of formation + Delta-G solvation = -9.228115 kcal Electronic energy + Delta-G solvation = -30340.906859 eV Core-core repulsion = 26435.311969 eV Total energy + Delta-G solvation = -3905.594890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.61110 -38.89746 -37.02994 -36.32593 -34.57612 -33.23885 -32.59554 -31.31086 -29.67234 -29.10249 -28.15469 -26.82746 -26.48699 -25.35942 -23.66045 -21.86640 -21.33799 -20.15252 -19.58471 -18.79519 -18.07476 -17.32878 -16.96587 -16.51549 -16.32557 -15.73596 -15.29088 -14.70035 -14.65499 -14.32636 -14.16967 -14.01423 -13.67268 -13.44077 -13.42077 -13.19443 -12.86568 -12.65080 -12.33340 -12.25715 -12.10185 -11.96995 -11.83018 -11.77616 -11.62573 -11.48697 -11.04116 -11.01445 -10.87233 -10.82815 -10.68787 -10.42033 -10.20607 -10.12283 -10.07837 -9.67707 -9.67068 -9.51152 -8.53266 -8.39104 -8.33462 -6.77794 -5.68655 -3.00070 1.15160 2.60777 2.75413 3.02213 3.42161 3.46857 3.48702 3.88350 4.44500 4.45770 4.52508 4.67660 4.70089 4.85419 5.01886 5.05942 5.07219 5.09447 5.14716 5.19082 5.24016 5.37254 5.41805 5.49424 5.51654 5.53875 5.61280 5.62499 5.65491 5.72418 5.79464 5.88393 5.92405 6.06573 6.16624 6.20117 6.20815 6.29192 6.33071 6.44314 6.48890 6.51247 6.63246 6.68009 6.75416 7.35494 7.55830 7.67312 7.72387 7.86786 8.15334 8.29458 9.25197 9.85407 10.52124 11.43591 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.003375 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.807704 B = 8295.268673 C = 9346.331373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C -0.108 4.108 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.116 4.116 7 C 0.520 3.480 8 O -0.535 6.535 9 N -0.614 5.614 10 C 0.078 3.922 11 C 0.070 3.930 12 H 0.068 0.932 13 C -0.140 4.140 14 O -0.346 6.346 15 C 0.092 3.908 16 C -0.129 4.129 17 C 0.182 3.818 18 N -0.599 5.599 19 C -0.228 4.228 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.288 1.288 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.122 3.878 28 C 0.098 3.902 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.025 0.975 49 H 0.038 0.962 50 H 0.071 0.929 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -6.970 -20.703 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.132 4.132 3 C -0.108 4.108 4 C -0.181 4.181 5 C -0.137 4.137 6 C -0.155 4.155 7 C 0.309 3.691 8 O -0.412 6.412 9 N -0.348 5.348 10 C -0.045 4.045 11 C 0.011 3.989 12 H 0.086 0.914 13 C -0.198 4.198 14 O -0.264 6.264 15 C 0.051 3.949 16 C -0.168 4.168 17 C 0.057 3.943 18 N -0.325 5.325 19 C -0.356 4.356 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.208 1.208 26 H -0.217 1.217 27 C -0.005 4.005 28 C -0.025 4.025 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.089 0.911 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.445 -7.240 -20.124 21.663 hybrid contribution -0.811 0.329 0.506 1.011 sum -4.255 -6.912 -19.618 21.231 Atomic orbital electron populations 1.24407 0.95710 1.02029 1.00467 1.21851 0.95302 0.96048 1.00017 1.20556 0.93886 0.94419 1.01980 1.20914 1.00178 0.94464 1.02572 1.22754 0.93869 0.97659 0.99455 1.20822 0.98142 0.98612 0.97958 1.20465 0.80632 0.82903 0.85129 1.90701 1.68380 1.29239 1.52843 1.48223 1.39524 1.13550 1.33467 1.22541 1.03091 0.84076 0.94793 1.22433 0.93212 0.94354 0.88915 0.91391 1.21686 1.02213 0.95983 0.99930 1.87849 1.51259 1.38978 1.48333 1.22372 0.98851 0.83626 0.90099 1.22834 0.96954 1.01387 0.95641 1.21163 0.82400 0.97958 0.92756 1.44412 1.02330 1.58099 1.27660 1.18993 0.87377 1.20603 1.08622 0.90723 1.24788 0.96315 1.00007 0.99075 1.69966 1.14216 1.40713 1.31695 0.86181 0.80663 0.80192 0.79007 1.21571 1.20818 1.21692 1.21967 0.94492 0.94883 0.89130 1.22181 0.91916 1.00264 0.88117 0.88191 0.88027 0.86825 0.91388 0.91431 0.91125 0.86382 0.87911 0.88028 0.90528 0.89242 0.91299 0.91004 0.91872 0.90876 0.90902 0.93005 0.94037 0.93753 0.95782 0.94396 0.91065 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 14.11 28.88 0.41 -1.18 16 2 C -0.11 -1.10 9.83 -37.83 -0.37 -1.48 16 3 C -0.11 -1.11 5.98 -102.87 -0.62 -1.72 16 4 C -0.12 -1.06 8.54 36.00 0.31 -0.76 16 5 C -0.12 -1.28 8.45 -36.16 -0.31 -1.59 16 6 C -0.12 -1.15 4.13 -29.04 -0.12 -1.27 16 7 C 0.52 7.30 7.71 -10.98 -0.08 7.22 16 8 O -0.54 -9.56 15.52 5.56 0.09 -9.48 16 9 N -0.61 -8.36 2.96 -172.67 -0.51 -8.87 16 10 C 0.08 0.85 5.81 -3.54 -0.02 0.83 16 11 C 0.07 0.96 3.20 -26.59 -0.09 0.88 16 12 H 0.07 1.07 6.28 -51.93 -0.33 0.74 16 13 C -0.14 -1.55 9.57 37.16 0.36 -1.20 16 14 O -0.35 -6.21 9.93 -35.22 -0.35 -6.56 16 15 C 0.09 1.68 0.83 -89.49 -0.07 1.61 16 16 C -0.13 -2.48 6.12 -25.25 -0.15 -2.64 16 17 C 0.18 4.53 5.40 -2.96 -0.02 4.52 16 18 N -0.60 -15.79 3.40 -170.16 -0.58 -16.36 16 19 C -0.23 -6.52 10.27 -15.06 -0.15 -6.68 16 20 H 0.07 2.08 7.84 -52.49 -0.41 1.67 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 22 N -0.92 -27.40 10.35 55.49 0.57 -26.82 16 23 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.12 2.67 6.19 -2.74 -0.02 2.65 16 28 C 0.10 1.52 5.30 -3.89 -0.02 1.50 16 29 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.10 0.78 6.09 -52.49 -0.32 0.46 16 31 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.07 0.48 6.64 -51.93 -0.34 0.14 16 33 H 0.07 0.50 6.26 -51.93 -0.33 0.17 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.12 1.32 8.05 -52.48 -0.42 0.89 16 36 H 0.10 0.90 5.32 -51.93 -0.28 0.62 16 37 H 0.10 0.74 8.00 -51.93 -0.42 0.32 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.69 6.05 -51.93 -0.31 0.38 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.26 8.00 -51.93 -0.42 0.85 16 45 H 0.05 1.44 7.29 -51.93 -0.38 1.06 16 46 H 0.04 1.13 7.60 -51.93 -0.39 0.73 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.02 0.56 7.83 -51.93 -0.41 0.15 16 49 H 0.04 0.83 6.12 -51.93 -0.32 0.51 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.10 1.71 6.86 -51.93 -0.36 1.36 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -34.16 395.60 -9.27 -43.43 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.36 Total: 0.82 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.06 Total: 0.45 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.51 Total: -52.06 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.26 Total: -16.04 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.16 -9.27 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131674634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.202 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds