Wall clock time and date at job start Tue Mar 31 2020 17:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47388 * 319.33078 * 3 2 1 5 5 C 1.50694 * 109.54137 * 300.00241 * 4 3 2 6 6 O 1.21287 * 119.99818 * 239.99580 * 5 4 3 7 7 N 1.34776 * 120.00483 * 60.00072 * 5 4 3 8 8 C 1.46494 * 120.00412 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.50115 * 35.06198 * 8 7 5 10 10 C 1.53038 * 109.49926 * 155.16129 * 8 7 5 11 11 C 1.53043 * 109.54166 * 58.58414 * 10 8 7 12 12 C 1.52755 * 109.38353 * 61.23904 * 11 10 8 13 13 H 1.09005 * 109.43316 * 65.42193 * 12 11 10 14 14 C 1.52992 * 109.51206 * 185.70744 * 12 11 10 15 15 N 1.46930 * 109.00958 * 305.59062 * 12 11 10 16 16 C 1.36933 * 120.63051 * 233.58158 * 15 12 11 17 17 H 1.07998 * 119.99535 * 41.54751 * 16 15 12 18 18 C 1.38813 * 120.00109 * 221.81612 * 16 15 12 19 19 N 1.31617 * 120.00318 * 214.02526 * 18 16 15 20 20 Si 1.86800 * 119.99727 * 34.02783 * 18 16 15 21 21 H 1.48499 * 109.47353 * 84.59893 * 20 18 16 22 22 H 1.48498 * 109.47204 * 204.60288 * 20 18 16 23 23 H 1.48505 * 109.47172 * 324.60350 * 20 18 16 24 24 C 1.46928 * 118.73699 * 53.31162 * 15 12 11 25 25 C 1.53176 * 109.53853 * 60.17856 * 4 3 2 26 26 C 1.53282 * 109.05984 * 176.85495 * 25 4 3 27 27 O 1.42910 * 109.46039 * 302.44011 * 26 25 4 28 28 C 1.42903 * 114.09217 * 61.16058 * 27 26 25 29 29 C 1.53092 * 109.41653 * 298.83884 * 28 27 26 30 30 H 4.44654 * 5.63334 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.47172 * 199.32868 * 3 2 1 32 32 H 1.09004 * 109.47215 * 79.33373 * 3 2 1 33 33 H 0.97006 * 119.99605 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.46087 * 178.60519 * 10 8 7 35 35 H 1.08998 * 109.45840 * 298.57479 * 10 8 7 36 36 H 1.09001 * 109.49823 * 181.31911 * 11 10 8 37 37 H 1.09001 * 109.49108 * 301.38121 * 11 10 8 38 38 H 1.08998 * 109.47705 * 179.52993 * 14 12 11 39 39 H 1.09001 * 109.47388 * 299.53189 * 14 12 11 40 40 H 1.09004 * 109.46946 * 59.52675 * 14 12 11 41 41 H 0.97000 * 120.00147 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.58932 * 66.42956 * 24 15 12 43 43 H 1.08995 * 109.58772 * 186.86005 * 24 15 12 44 44 H 1.08999 * 109.52759 * 296.83992 * 25 4 3 45 45 H 1.08999 * 109.52822 * 57.03350 * 25 4 3 46 46 H 1.09001 * 109.45913 * 182.45143 * 26 25 4 47 47 H 1.09002 * 109.47195 * 62.44578 * 26 25 4 48 48 H 1.09004 * 109.47814 * 178.85569 * 28 27 26 49 49 H 1.09002 * 109.48477 * 58.82619 * 28 27 26 50 50 H 1.08994 * 109.52301 * 297.70452 * 29 28 27 51 51 H 1.09001 * 109.57048 * 177.54476 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.0932 0.9401 5 6 2.6550 -0.8320 2.3369 6 8 3.4437 -0.6617 3.2424 7 7 1.3301 -0.7876 2.5799 8 6 0.8425 -0.5331 3.9377 9 1 1.5139 0.1626 4.4409 10 6 -0.5626 0.0697 3.8713 11 6 -1.4981 -0.8924 3.1355 12 6 -1.5733 -2.2118 3.9017 13 1 -2.0455 -2.0427 4.8695 14 6 -2.3923 -3.2236 3.0979 15 7 -0.2121 -2.7276 4.1014 16 6 0.1157 -3.9996 3.7148 17 1 -0.2471 -4.3887 2.7749 18 6 0.9096 -4.7910 4.5335 19 7 1.7572 -5.6458 4.0012 20 14 0.7748 -4.6430 6.3907 21 1 -0.3409 -5.4946 6.8756 22 1 2.0457 -5.0887 7.0163 23 1 0.5125 -3.2279 6.7568 24 6 0.7923 -1.8504 4.7182 25 6 2.6512 -2.4575 0.4609 26 6 3.2326 -3.5518 1.3630 27 8 4.6597 -3.4798 1.3395 28 6 5.1894 -2.2428 1.8207 29 6 4.6884 -1.0969 0.9378 30 1 -1.0498 -0.0004 0.0001 31 1 3.0089 0.9706 0.3401 32 1 3.0095 -0.1894 -1.0099 33 1 0.6993 -0.9235 1.8556 34 1 -0.9346 0.2358 4.8822 35 1 -0.5255 1.0192 3.3374 36 1 -2.4930 -0.4522 3.0680 37 1 -1.1135 -1.0779 2.1325 38 1 -2.4386 -4.1673 3.6412 39 1 -3.4017 -2.8392 2.9508 40 1 -1.9203 -3.3851 2.1287 41 1 2.3117 -6.1990 4.5734 42 1 0.5169 -1.6512 5.7538 43 1 1.7691 -2.3327 4.6840 44 1 1.5626 -2.4811 0.5115 45 1 2.9726 -2.6246 -0.5672 46 1 2.9121 -4.5289 1.0014 47 1 2.8781 -3.4077 2.3837 48 1 6.2784 -2.2768 1.7890 49 1 4.8605 -2.0813 2.8473 50 1 5.0509 -1.2364 -0.0806 51 1 5.0554 -0.1477 1.3283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132094779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:03 Heat of formation + Delta-G solvation = -9.060443 kcal Electronic energy + Delta-G solvation = -32920.931124 eV Core-core repulsion = 29015.343505 eV Total energy + Delta-G solvation = -3905.587619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.71791 -38.56289 -37.16506 -35.59841 -34.18637 -32.71264 -32.40166 -30.92376 -30.69587 -30.19036 -28.26380 -26.42983 -24.90974 -23.75810 -23.21503 -22.45428 -21.88816 -20.43626 -19.37537 -18.85157 -18.11357 -16.51509 -16.48135 -15.73377 -15.43285 -15.37759 -15.11918 -14.59996 -14.47365 -14.28971 -14.01623 -13.91430 -13.64415 -13.43854 -13.05749 -13.00661 -12.75824 -12.59454 -12.29212 -12.20213 -11.90401 -11.81067 -11.69707 -11.39600 -11.22609 -10.92307 -10.88469 -10.62921 -10.50446 -10.44494 -10.31315 -10.24703 -10.05032 -9.90072 -9.86029 -9.79054 -9.47752 -9.23298 -8.76751 -8.48033 -8.21436 -6.64368 -6.05136 -3.36244 2.68134 2.79705 3.16926 3.43506 3.54521 3.58191 3.71122 4.25116 4.49215 4.61437 4.84408 4.86429 4.92669 4.95150 5.19721 5.26441 5.34279 5.36447 5.41354 5.46345 5.54788 5.59451 5.71467 5.84324 5.89637 5.94995 5.96428 6.00441 6.04987 6.07483 6.16902 6.17844 6.22394 6.26773 6.34291 6.34890 6.43879 6.49629 6.52931 6.59129 6.61056 6.85181 6.96286 7.00350 7.07840 7.17547 7.53068 7.82826 8.05188 8.12087 8.43225 8.78864 9.02604 9.75429 10.24821 11.09199 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.006933 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.684860 B = 4037.613627 C = 5343.646445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.002 4.002 4 C -0.075 4.075 5 C 0.525 3.475 6 O -0.549 6.549 7 N -0.697 5.697 8 C 0.122 3.878 9 H 0.075 0.925 10 C -0.118 4.118 11 C -0.132 4.132 12 C 0.162 3.838 13 H 0.025 0.975 14 C -0.132 4.132 15 N -0.589 5.589 16 C -0.274 4.274 17 H 0.074 0.926 18 C 0.056 3.944 19 N -0.871 5.871 20 Si 0.839 3.161 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.263 1.263 24 C 0.135 3.865 25 C -0.137 4.137 26 C 0.066 3.934 27 O -0.387 6.387 28 C 0.051 3.949 29 C -0.125 4.125 30 H 0.218 0.782 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.263 0.737 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 12.120 -8.454 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C -0.038 4.038 4 C -0.078 4.078 5 C 0.311 3.689 6 O -0.428 6.428 7 N -0.351 5.351 8 C 0.015 3.985 9 H 0.093 0.907 10 C -0.157 4.157 11 C -0.172 4.172 12 C 0.056 3.944 13 H 0.043 0.957 14 C -0.190 4.190 15 N -0.314 5.314 16 C -0.402 4.402 17 H 0.092 0.908 18 C -0.148 4.148 19 N -0.509 5.509 20 Si 0.667 3.333 21 H -0.218 1.218 22 H -0.226 1.226 23 H -0.188 1.188 24 C 0.008 3.992 25 C -0.174 4.174 26 C -0.011 4.011 27 O -0.306 6.306 28 C -0.026 4.026 29 C -0.163 4.163 30 H 0.235 0.765 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.725 11.918 -7.863 14.297 hybrid contribution -0.816 0.116 0.938 1.248 sum -1.540 12.034 -6.925 13.970 Atomic orbital electron populations 1.24875 0.95920 1.00551 1.00651 1.22897 0.94399 1.00571 1.00164 1.18820 0.85096 0.99254 1.00663 1.20928 0.97306 0.96569 0.92998 1.20140 0.82765 0.76215 0.89828 1.90600 1.55312 1.50537 1.46318 1.46240 1.06679 1.71025 1.11126 1.21542 0.94154 0.98788 0.83990 0.90651 1.21671 0.94991 0.97819 1.01173 1.22020 0.97995 0.97369 0.99773 1.20493 0.87205 0.91416 0.95273 0.95727 1.21748 0.96765 0.99828 1.00637 1.44271 1.03467 1.11342 1.72299 1.18434 1.31505 0.88677 1.01573 0.90845 1.25571 0.96621 0.95572 0.97004 1.70025 1.19719 1.25701 1.35456 0.87433 0.76713 0.78937 0.90245 1.21792 1.22569 1.18770 1.21680 0.94298 0.89578 0.93601 1.22294 1.01576 0.93057 1.00521 1.22627 0.79535 0.98287 1.00602 1.87864 1.21401 1.35501 1.85807 1.22719 0.98048 0.83280 0.98565 1.22002 0.92147 1.00916 1.01256 0.76495 0.89184 0.88456 0.75829 0.91172 0.92746 0.92638 0.92309 0.91803 0.94497 0.92748 0.92755 0.95258 0.91042 0.90429 0.90900 0.88424 0.90417 0.89852 0.90563 0.90840 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 16.67 29.55 0.49 -1.84 16 2 C -0.18 -2.25 9.84 -37.12 -0.37 -2.61 16 3 C 0.00 -0.02 4.79 -29.52 -0.14 -0.16 16 4 C -0.07 -1.11 0.51 -155.48 -0.08 -1.19 16 5 C 0.52 9.47 5.07 -10.99 -0.06 9.42 16 6 O -0.55 -11.42 13.51 5.55 0.08 -11.34 16 7 N -0.70 -12.08 4.25 -53.69 -0.23 -12.30 16 8 C 0.12 2.18 2.81 -67.81 -0.19 1.99 16 9 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 10 C -0.12 -1.75 5.59 -26.69 -0.15 -1.90 16 11 C -0.13 -1.96 5.18 -26.83 -0.14 -2.10 16 12 C 0.16 2.95 3.48 -67.83 -0.24 2.72 16 13 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 14 C -0.13 -2.29 8.06 37.15 0.30 -1.99 16 15 N -0.59 -12.83 2.37 -165.03 -0.39 -13.22 16 16 C -0.27 -6.92 8.41 -15.06 -0.13 -7.04 16 17 H 0.07 1.99 6.85 -52.49 -0.36 1.63 16 18 C 0.06 1.51 4.85 -17.43 -0.08 1.43 16 19 N -0.87 -24.77 13.97 55.49 0.78 -24.00 16 20 Si 0.84 21.37 27.41 -169.99 -4.66 16.71 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 23 H -0.26 -6.49 5.21 56.52 0.29 -6.20 16 24 C 0.14 2.91 4.20 -3.71 -0.02 2.90 16 25 C -0.14 -2.19 4.55 -26.49 -0.12 -2.31 16 26 C 0.07 1.31 6.62 37.30 0.25 1.56 16 27 O -0.39 -7.56 10.77 -35.23 -0.38 -7.94 16 28 C 0.05 0.86 6.55 37.21 0.24 1.11 16 29 C -0.13 -1.76 4.56 -26.59 -0.12 -1.88 16 30 H 0.22 1.91 7.80 -54.10 -0.42 1.49 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 6.49 2.51 -40.82 -0.10 6.38 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.87 5.41 -51.93 -0.28 0.59 16 38 H 0.06 1.23 7.68 -51.93 -0.40 0.83 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.97 7.42 -51.93 -0.39 0.58 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 42 H 0.03 0.65 6.68 -51.93 -0.35 0.30 16 43 H 0.07 1.80 7.06 -51.93 -0.37 1.43 16 44 H 0.08 1.31 6.74 -51.93 -0.35 0.96 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 47 H 0.08 1.87 7.38 -51.93 -0.38 1.49 16 48 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.08 1.53 5.81 -51.93 -0.30 1.23 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -29.79 378.25 -8.05 -37.84 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.40 Total: 10.48 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.54 Total: -1.91 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.16 Total: -49.52 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.30 Total: -19.29 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.66 Total: 16.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.79 -8.05 -37.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132094779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.776 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds