Wall clock time and date at job start Tue Mar 31 2020 17:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47388 * 319.33078 * 3 2 1 5 5 C 1.50694 * 109.54137 * 300.00241 * 4 3 2 6 6 O 1.21287 * 119.99818 * 239.99580 * 5 4 3 7 7 N 1.34776 * 120.00483 * 60.00072 * 5 4 3 8 8 C 1.46494 * 120.00412 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.50115 * 35.06198 * 8 7 5 10 10 C 1.53038 * 109.49926 * 155.16129 * 8 7 5 11 11 C 1.53043 * 109.54166 * 58.58414 * 10 8 7 12 12 C 1.52755 * 109.38353 * 61.23904 * 11 10 8 13 13 H 1.09005 * 109.43316 * 65.42193 * 12 11 10 14 14 C 1.52992 * 109.51206 * 185.70744 * 12 11 10 15 15 N 1.46930 * 109.00958 * 305.59062 * 12 11 10 16 16 C 1.36933 * 120.63051 * 233.58158 * 15 12 11 17 17 H 1.07998 * 119.99535 * 41.54751 * 16 15 12 18 18 C 1.38813 * 120.00109 * 221.81612 * 16 15 12 19 19 N 1.31617 * 120.00318 * 214.02526 * 18 16 15 20 20 Si 1.86800 * 119.99727 * 34.02783 * 18 16 15 21 21 H 1.48499 * 109.47353 * 84.59893 * 20 18 16 22 22 H 1.48498 * 109.47204 * 204.60288 * 20 18 16 23 23 H 1.48505 * 109.47172 * 324.60350 * 20 18 16 24 24 C 1.46928 * 118.73699 * 53.31162 * 15 12 11 25 25 C 1.53176 * 109.53853 * 60.17856 * 4 3 2 26 26 C 1.53282 * 109.05984 * 176.85495 * 25 4 3 27 27 O 1.42910 * 109.46039 * 302.44011 * 26 25 4 28 28 C 1.42903 * 114.09217 * 61.16058 * 27 26 25 29 29 C 1.53092 * 109.41653 * 298.83884 * 28 27 26 30 30 H 4.44654 * 5.63334 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.47172 * 199.32868 * 3 2 1 32 32 H 1.09004 * 109.47215 * 79.33373 * 3 2 1 33 33 H 0.97006 * 119.99605 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.46087 * 178.60519 * 10 8 7 35 35 H 1.08998 * 109.45840 * 298.57479 * 10 8 7 36 36 H 1.09001 * 109.49823 * 181.31911 * 11 10 8 37 37 H 1.09001 * 109.49108 * 301.38121 * 11 10 8 38 38 H 1.08998 * 109.47705 * 179.52993 * 14 12 11 39 39 H 1.09001 * 109.47388 * 299.53189 * 14 12 11 40 40 H 1.09004 * 109.46946 * 59.52675 * 14 12 11 41 41 H 0.97000 * 120.00147 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.58932 * 66.42956 * 24 15 12 43 43 H 1.08995 * 109.58772 * 186.86005 * 24 15 12 44 44 H 1.08999 * 109.52759 * 296.83992 * 25 4 3 45 45 H 1.08999 * 109.52822 * 57.03350 * 25 4 3 46 46 H 1.09001 * 109.45913 * 182.45143 * 26 25 4 47 47 H 1.09002 * 109.47195 * 62.44578 * 26 25 4 48 48 H 1.09004 * 109.47814 * 178.85569 * 28 27 26 49 49 H 1.09002 * 109.48477 * 58.82619 * 28 27 26 50 50 H 1.08994 * 109.52301 * 297.70452 * 29 28 27 51 51 H 1.09001 * 109.57048 * 177.54476 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.0932 0.9401 5 6 2.6550 -0.8320 2.3369 6 8 3.4437 -0.6617 3.2424 7 7 1.3301 -0.7876 2.5799 8 6 0.8425 -0.5331 3.9377 9 1 1.5139 0.1626 4.4409 10 6 -0.5626 0.0697 3.8713 11 6 -1.4981 -0.8924 3.1355 12 6 -1.5733 -2.2118 3.9017 13 1 -2.0455 -2.0427 4.8695 14 6 -2.3923 -3.2236 3.0979 15 7 -0.2121 -2.7276 4.1014 16 6 0.1157 -3.9996 3.7148 17 1 -0.2471 -4.3887 2.7749 18 6 0.9096 -4.7910 4.5335 19 7 1.7572 -5.6458 4.0012 20 14 0.7748 -4.6430 6.3907 21 1 -0.3409 -5.4946 6.8756 22 1 2.0457 -5.0887 7.0163 23 1 0.5125 -3.2279 6.7568 24 6 0.7923 -1.8504 4.7182 25 6 2.6512 -2.4575 0.4609 26 6 3.2326 -3.5518 1.3630 27 8 4.6597 -3.4798 1.3395 28 6 5.1894 -2.2428 1.8207 29 6 4.6884 -1.0969 0.9378 30 1 -1.0498 -0.0004 0.0001 31 1 3.0089 0.9706 0.3401 32 1 3.0095 -0.1894 -1.0099 33 1 0.6993 -0.9235 1.8556 34 1 -0.9346 0.2358 4.8822 35 1 -0.5255 1.0192 3.3374 36 1 -2.4930 -0.4522 3.0680 37 1 -1.1135 -1.0779 2.1325 38 1 -2.4386 -4.1673 3.6412 39 1 -3.4017 -2.8392 2.9508 40 1 -1.9203 -3.3851 2.1287 41 1 2.3117 -6.1990 4.5734 42 1 0.5169 -1.6512 5.7538 43 1 1.7691 -2.3327 4.6840 44 1 1.5626 -2.4811 0.5115 45 1 2.9726 -2.6246 -0.5672 46 1 2.9121 -4.5289 1.0014 47 1 2.8781 -3.4077 2.3837 48 1 6.2784 -2.2768 1.7890 49 1 4.8605 -2.0813 2.8473 50 1 5.0509 -1.2364 -0.0806 51 1 5.0554 -0.1477 1.3283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132094779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:02 Heat of formation + Delta-G solvation = -27.812158 kcal Electronic energy + Delta-G solvation = -32921.744260 eV Core-core repulsion = 29015.343505 eV Total energy + Delta-G solvation = -3906.400754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.06696 -40.04450 -38.68902 -36.80357 -35.75946 -34.46701 -33.46377 -32.50084 -32.29897 -31.61160 -29.34037 -27.98120 -26.63856 -25.04528 -24.58521 -24.08372 -23.27857 -21.97529 -20.73504 -20.40553 -19.02432 -18.33711 -17.83927 -17.19478 -17.02569 -16.84631 -16.65174 -16.17364 -15.91452 -15.62874 -15.44213 -15.33624 -15.11125 -14.90103 -14.45611 -14.40834 -14.11745 -13.97956 -13.81562 -13.58412 -13.40844 -13.19631 -13.10921 -12.95909 -12.73482 -12.59218 -12.47692 -12.19863 -12.14302 -11.81421 -11.69901 -11.60401 -11.58713 -11.37419 -11.17905 -11.09338 -10.93945 -10.62819 -10.44686 -10.20834 -9.84391 -8.50584 -8.19279 -5.42905 1.31701 1.39733 1.44591 1.64920 1.91178 1.95167 2.39116 2.49896 3.00394 3.02291 3.34012 3.46212 3.63406 3.73115 3.80728 3.92853 4.04361 4.08096 4.10129 4.14619 4.37807 4.39167 4.58860 4.60876 4.62293 4.65203 4.68657 4.74386 4.78755 4.80386 4.82447 4.88409 4.95378 5.00615 5.01944 5.06830 5.09316 5.10047 5.14947 5.20095 5.23674 5.27074 5.30580 5.57175 5.64876 5.74270 5.98887 6.32232 6.33569 6.67857 6.74030 7.08770 7.41579 7.73928 8.25528 8.98115 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.006933 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.684860 B = 4037.613627 C = 5343.646445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.210 4.210 3 C 0.004 3.996 4 C -0.070 4.070 5 C 0.514 3.486 6 O -0.584 6.584 7 N -0.693 5.693 8 C 0.124 3.876 9 H 0.070 0.930 10 C -0.111 4.111 11 C -0.123 4.123 12 C 0.151 3.849 13 H 0.029 0.971 14 C -0.126 4.126 15 N -0.597 5.597 16 C -0.237 4.237 17 H 0.053 0.947 18 C 0.008 3.992 19 N -0.908 5.908 20 Si 0.878 3.122 21 H -0.293 1.293 22 H -0.317 1.317 23 H -0.252 1.252 24 C 0.139 3.861 25 C -0.123 4.123 26 C 0.075 3.925 27 O -0.401 6.401 28 C 0.044 3.956 29 C -0.118 4.118 30 H 0.242 0.758 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.408 0.592 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.025 0.975 48 H 0.108 0.892 49 H 0.037 0.963 50 H 0.108 0.892 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 15.488 -10.738 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.211 4.211 3 C -0.032 4.032 4 C -0.073 4.073 5 C 0.301 3.699 6 O -0.465 6.465 7 N -0.347 5.347 8 C 0.017 3.983 9 H 0.088 0.912 10 C -0.149 4.149 11 C -0.162 4.162 12 C 0.047 3.953 13 H 0.047 0.953 14 C -0.183 4.183 15 N -0.322 5.322 16 C -0.366 4.366 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.550 5.550 20 Si 0.707 3.293 21 H -0.221 1.221 22 H -0.245 1.245 23 H -0.177 1.177 24 C 0.013 3.987 25 C -0.161 4.161 26 C -0.002 4.002 27 O -0.320 6.320 28 C -0.032 4.032 29 C -0.156 4.156 30 H 0.258 0.742 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.250 0.750 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.126 0.874 49 H 0.055 0.945 50 H 0.126 0.874 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.642 15.330 -10.149 18.574 hybrid contribution -0.257 -0.937 1.672 1.934 sum -2.899 14.393 -8.478 16.954 Atomic orbital electron populations 1.25559 0.96727 0.99356 0.99619 1.23226 0.95076 1.01654 1.01095 1.18841 0.84999 0.98239 1.01163 1.20941 0.97860 0.96924 0.91607 1.20873 0.82707 0.75287 0.91044 1.90585 1.56150 1.52002 1.47808 1.46268 1.06813 1.70641 1.10958 1.21425 0.96678 0.96316 0.83853 0.91233 1.21669 0.92162 0.98667 1.02405 1.21941 1.00286 0.95111 0.98870 1.20804 0.84645 0.93540 0.96314 0.95306 1.21686 0.98859 0.98468 0.99329 1.44380 1.05573 1.10185 1.72088 1.18299 1.28896 0.89482 0.99939 0.92922 1.25971 0.97652 0.96455 0.99090 1.70128 1.21543 1.27705 1.35633 0.86789 0.75468 0.79156 0.87890 1.22056 1.24489 1.17667 1.21504 0.91828 0.91218 0.94172 1.22165 1.00694 0.92301 1.00955 1.22324 0.80207 0.99136 0.98527 1.87828 1.20944 1.37406 1.85813 1.22857 0.99385 0.83691 0.97311 1.22002 0.91481 0.99779 1.02329 0.74186 0.87909 0.85403 0.75013 0.90145 0.89806 0.88565 0.92233 0.94670 0.90391 0.93738 0.93699 0.95797 0.95848 0.91335 0.87847 0.90293 0.95658 0.87424 0.94508 0.87394 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.73 16.67 74.32 1.24 -2.49 16 2 C -0.21 -4.51 9.84 31.13 0.31 -4.20 16 3 C 0.00 0.08 4.79 28.79 0.14 0.22 16 4 C -0.07 -1.96 0.51 -52.81 -0.03 -1.99 16 5 C 0.51 18.53 5.07 87.66 0.44 18.97 16 6 O -0.58 -25.14 13.51 -3.05 -0.04 -25.18 16 7 N -0.69 -23.42 4.25 -442.18 -1.88 -25.30 16 8 C 0.12 4.33 2.81 45.07 0.13 4.46 16 9 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 10 C -0.11 -2.87 5.59 30.62 0.17 -2.69 16 11 C -0.12 -3.12 5.18 30.53 0.16 -2.96 16 12 C 0.15 5.18 3.48 44.83 0.16 5.33 16 13 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 14 C -0.13 -4.09 8.06 71.98 0.58 -3.51 16 15 N -0.60 -26.14 2.37 -676.03 -1.60 -27.74 16 16 C -0.24 -12.38 8.41 84.03 0.71 -11.68 16 17 H 0.05 2.98 6.85 -2.91 -0.02 2.96 16 18 C 0.01 0.44 4.85 84.86 0.41 0.85 16 19 N -0.91 -55.22 13.97 21.65 0.30 -54.92 16 20 Si 0.88 46.12 27.41 68.60 1.88 48.00 16 21 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 22 H -0.32 -17.46 7.11 99.48 0.71 -16.76 16 23 H -0.25 -12.61 5.21 99.48 0.52 -12.09 16 24 C 0.14 6.14 4.20 86.36 0.36 6.50 16 25 C -0.12 -3.85 4.55 30.75 0.14 -3.71 16 26 C 0.07 3.13 6.62 72.08 0.48 3.61 16 27 O -0.40 -16.15 10.77 -148.98 -1.60 -17.76 16 28 C 0.04 1.51 6.55 72.01 0.47 1.98 16 29 C -0.12 -3.08 4.56 30.68 0.14 -2.94 16 30 H 0.24 3.06 7.80 -4.43 -0.03 3.03 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.41 12.41 2.51 -92.70 -0.23 12.17 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.52 5.41 -2.39 -0.01 1.51 16 38 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.51 7.42 -2.38 -0.02 1.50 16 41 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.02 1.08 6.68 -2.39 -0.02 1.06 16 43 H 0.02 1.24 7.06 -2.39 -0.02 1.22 16 44 H 0.07 2.26 6.74 -2.39 -0.02 2.24 16 45 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.02 1.31 7.38 -2.39 -0.02 1.30 16 48 H 0.11 3.10 8.14 -2.38 -0.02 3.09 16 49 H 0.04 1.57 5.81 -2.39 -0.01 1.56 16 50 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.09 2.15 8.03 -2.39 -0.02 2.13 16 Total: -1.00 -72.07 378.25 3.55 -68.52 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.49 Total: 28.63 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.00 Total: 5.75 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.18 Total: -107.96 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.65 Total: -42.94 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.00 kcal Total: -72.07 3.55 -68.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132094779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.709 kcal (2) G-P(sol) polarization free energy of solvation -72.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds