Wall clock time and date at job start Tue Mar 31 2020 20:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47066 * 2 1 4 4 C 1.52999 * 109.47114 * 119.99433 * 2 1 3 5 5 C 1.50698 * 109.47220 * 295.00552 * 4 2 1 6 6 C 1.34506 * 125.79357 * 89.99735 * 5 4 2 7 7 C 1.41378 * 106.84314 * 180.02562 * 6 5 4 8 8 C 1.34512 * 106.84233 * 0.02562 * 7 6 5 9 9 O 1.34305 * 125.78615 * 269.68964 * 5 4 2 10 10 C 1.50694 * 109.47414 * 239.99769 * 2 1 3 11 11 O 1.21281 * 119.99950 * 262.91445 * 10 2 1 12 12 N 1.34778 * 120.00407 * 82.91014 * 10 2 1 13 13 C 1.46927 * 120.62719 * 4.49964 * 12 10 2 14 14 C 1.53197 * 108.77673 * 233.63152 * 13 12 10 15 15 C 1.53035 * 109.33941 * 305.38188 * 14 13 12 16 16 C 1.53039 * 109.53951 * 61.31380 * 15 14 13 17 17 C 1.46917 * 120.63753 * 184.52494 * 12 10 2 18 18 H 1.09000 * 109.59191 * 246.15832 * 17 12 10 19 19 C 1.53002 * 109.58394 * 6.58181 * 17 12 10 20 20 N 1.46502 * 109.47358 * 178.71812 * 19 17 12 21 21 C 1.46501 * 119.99846 * 87.42110 * 20 19 17 22 22 C 1.36932 * 120.00120 * 267.42660 * 20 19 17 23 23 H 1.08004 * 119.99851 * 327.50575 * 22 20 19 24 24 C 1.38811 * 120.00034 * 147.50425 * 22 20 19 25 25 N 1.31625 * 119.99848 * 166.22568 * 24 22 20 26 26 Si 1.86798 * 120.00296 * 346.22974 * 24 22 20 27 27 H 1.48495 * 109.47264 * 90.14826 * 26 24 22 28 28 H 1.48502 * 109.47411 * 210.15034 * 26 24 22 29 29 H 1.48502 * 109.46730 * 330.14748 * 26 24 22 30 30 H 1.08998 * 109.47276 * 177.43818 * 1 2 3 31 31 H 1.09002 * 109.47561 * 297.44444 * 1 2 3 32 32 H 1.09008 * 109.47198 * 57.44040 * 1 2 3 33 33 H 1.09003 * 109.46934 * 55.00425 * 4 2 1 34 34 H 1.09002 * 109.47247 * 174.99889 * 4 2 1 35 35 H 1.08002 * 126.57624 * 0.03590 * 6 5 4 36 36 H 1.08004 * 126.58137 * 179.97438 * 7 6 5 37 37 H 1.07998 * 125.79405 * 179.97438 * 8 7 6 38 38 H 1.09007 * 109.58873 * 353.41688 * 13 12 10 39 39 H 1.09000 * 109.59103 * 113.84664 * 13 12 10 40 40 H 1.09004 * 109.49555 * 65.31937 * 14 13 12 41 41 H 1.09007 * 109.49604 * 185.37850 * 14 13 12 42 42 H 1.09000 * 109.43198 * 301.30924 * 15 14 13 43 43 H 1.09002 * 109.48462 * 181.35463 * 15 14 13 44 44 H 1.08995 * 109.49747 * 178.71359 * 16 15 14 45 45 H 1.09003 * 109.49824 * 58.65258 * 16 15 14 46 46 H 1.08999 * 109.46837 * 298.71821 * 19 17 12 47 47 H 1.08998 * 109.47240 * 58.71689 * 19 17 12 48 48 H 1.09004 * 109.47003 * 54.45920 * 21 20 19 49 49 H 1.09008 * 109.47068 * 174.45754 * 21 20 19 50 50 H 1.09002 * 109.47714 * 294.45631 * 21 20 19 51 51 H 0.97001 * 119.99911 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 6 0.5008 -0.1006 3.1721 7 6 0.5390 0.8278 4.2376 8 6 1.7002 1.4979 4.1292 9 8 2.3669 1.0222 3.0648 10 6 2.0324 -0.7104 -1.2304 11 8 2.3567 -1.8773 -1.1669 12 7 2.1212 -0.0491 -2.4014 13 6 1.8262 1.3884 -2.4735 14 6 0.7742 1.6219 -3.5624 15 6 1.2638 1.0140 -4.8788 16 6 1.4548 -0.4946 -4.7061 17 6 2.5144 -0.7520 -3.6302 18 1 3.4800 -0.3789 -3.9716 19 6 2.6103 -2.2537 -3.3537 20 7 2.9726 -2.9554 -4.5876 21 6 4.3828 -3.1254 -4.9465 22 6 1.9933 -3.4522 -5.4056 23 1 1.0673 -3.8123 -4.9821 24 6 2.1906 -3.4929 -6.7790 25 7 1.3859 -4.2057 -7.5386 26 14 3.5980 -2.5363 -7.5493 27 1 4.8087 -3.3944 -7.6032 28 1 3.2218 -2.1240 -8.9254 29 1 3.8824 -1.3298 -6.7314 30 1 -0.3634 -1.0266 -0.0459 31 1 -0.3634 0.4736 0.9120 32 1 -0.3634 0.5531 -0.8662 33 1 1.6054 -1.7197 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 -0.2919 -0.8022 2.9578 36 1 -0.2192 0.9720 4.9932 37 1 2.0412 2.2818 4.7893 38 1 1.4403 1.7309 -1.5133 39 1 2.7355 1.9362 -2.7206 40 1 -0.1632 1.1486 -3.2701 41 1 0.6162 2.6926 -3.6921 42 1 2.2134 1.4706 -5.1580 43 1 0.5278 1.1998 -5.6610 44 1 1.7816 -0.9303 -5.6502 45 1 0.5112 -0.9485 -4.4033 46 1 3.3718 -2.4356 -2.5953 47 1 1.6476 -2.6197 -2.9969 48 1 4.9128 -3.6015 -4.1216 49 1 4.4585 -3.7507 -5.8362 50 1 4.8264 -2.1505 -5.1489 51 1 1.5240 -4.2344 -8.4983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158598253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:07 Heat of formation + Delta-G solvation = 14.943338 kcal Electronic energy + Delta-G solvation = -30620.711194 eV Core-core repulsion = 26716.164457 eV Total energy + Delta-G solvation = -3904.546737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.77505 -40.46893 -37.44216 -35.89732 -35.11017 -33.09196 -32.56390 -31.88729 -30.78150 -29.88989 -27.04377 -26.71811 -25.85212 -24.66133 -23.54445 -22.24421 -21.89608 -20.79006 -20.40920 -20.05658 -18.49059 -17.58532 -16.81048 -16.73441 -16.27791 -15.66803 -15.30707 -15.02095 -14.69938 -14.53764 -14.28573 -13.97485 -13.83285 -13.40982 -13.13343 -13.08669 -12.99530 -12.93741 -12.85278 -12.68427 -12.33693 -12.17307 -12.09256 -11.96658 -11.72174 -11.46442 -11.30233 -11.15575 -11.02689 -10.66669 -10.44545 -10.28110 -10.15903 -10.09248 -9.96872 -9.86391 -9.44435 -9.03592 -8.63759 -8.41224 -8.21269 -6.78577 -5.88632 -3.30144 1.52643 2.41253 2.77964 2.82122 3.22693 3.33743 3.47035 3.50381 4.35413 4.55159 4.57728 4.72720 4.77385 4.84410 4.85261 4.95632 5.01650 5.16142 5.16742 5.30570 5.41377 5.44610 5.45549 5.54861 5.58589 5.59892 5.63792 5.65076 5.78314 5.80977 5.88118 5.94054 5.98909 6.02369 6.07653 6.18103 6.22651 6.31410 6.37094 6.44663 6.50943 6.63533 6.74279 6.79147 6.91877 6.95870 7.13863 7.29062 7.68896 8.11157 8.37556 8.50308 9.05922 9.79617 10.18874 11.27881 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.003036 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.217762 B = 9221.766935 C = 9743.778019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.092 0.908 4 C -0.024 4.024 5 C -0.001 4.001 6 C -0.210 4.210 7 C -0.213 4.213 8 C -0.049 4.049 9 O -0.177 6.177 10 C 0.517 3.483 11 O -0.526 6.526 12 N -0.602 5.602 13 C 0.104 3.896 14 C -0.132 4.132 15 C -0.123 4.123 16 C -0.118 4.118 17 C 0.123 3.877 18 H 0.058 0.942 19 C 0.163 3.837 20 N -0.613 5.613 21 C 0.099 3.901 22 C -0.251 4.251 23 H 0.082 0.918 24 C 0.022 3.978 25 N -0.915 5.915 26 Si 0.889 3.111 27 H -0.290 1.290 28 H -0.307 1.307 29 H -0.269 1.269 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.200 0.800 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.022 0.978 49 H 0.062 0.938 50 H 0.011 0.989 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 16.115 19.451 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 H 0.110 0.890 4 C -0.061 4.061 5 C -0.051 4.051 6 C -0.229 4.229 7 C -0.233 4.233 8 C -0.116 4.116 9 O -0.073 6.073 10 C 0.304 3.696 11 O -0.402 6.402 12 N -0.336 5.336 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.161 4.161 16 C -0.156 4.156 17 C 0.018 3.982 18 H 0.076 0.924 19 C 0.037 3.963 20 N -0.337 5.337 21 C -0.046 4.046 22 C -0.380 4.380 23 H 0.100 0.900 24 C -0.177 4.177 25 N -0.559 5.559 26 Si 0.721 3.279 27 H -0.218 1.218 28 H -0.236 1.236 29 H -0.194 1.194 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.217 0.783 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.041 0.959 49 H 0.081 0.919 50 H 0.029 0.971 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.643 15.503 19.209 24.693 hybrid contribution 0.500 0.834 -0.559 1.121 sum -0.143 16.337 18.650 24.794 Atomic orbital electron populations 1.21835 0.92305 1.03356 1.02798 1.21329 0.98292 1.00624 0.92735 0.89006 1.19986 1.02899 0.97265 0.85951 1.22479 0.92086 0.92809 0.97755 1.21624 0.99591 1.03934 0.97759 1.21841 0.99606 0.99904 1.01903 1.23994 0.93704 1.02406 0.91517 1.84032 1.44138 1.43304 1.35816 1.20370 0.77983 0.87158 0.84072 1.90768 1.48713 1.16283 1.84479 1.48386 1.67443 1.09144 1.08590 1.21786 0.98711 0.81692 0.99776 1.21910 0.98703 1.00553 0.95889 1.21597 1.00799 0.97371 0.96352 1.21882 0.99268 0.93674 1.00794 1.22388 0.96544 0.96446 0.82774 0.92380 1.21565 1.01154 0.86521 0.87034 1.44446 1.01215 1.63248 1.24833 1.21434 0.86181 0.97725 0.99246 1.18924 0.98057 1.33873 0.87156 0.90035 1.25420 0.97282 0.98789 0.96160 1.69783 1.39508 1.41545 1.05017 0.86935 0.82113 0.81385 0.77515 1.21804 1.23569 1.19372 0.91530 0.91194 0.91862 0.87500 0.89583 0.83403 0.83617 0.78340 0.90026 0.91689 0.91515 0.91411 0.92558 0.92005 0.88699 0.91816 0.91103 0.92186 0.95923 0.91950 0.97094 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.81 37.16 0.33 -1.09 16 2 C -0.11 -1.17 1.86 -91.78 -0.17 -1.34 16 3 H 0.09 0.88 6.40 -51.92 -0.33 0.55 16 4 C -0.02 -0.25 4.64 -27.88 -0.13 -0.38 16 5 C 0.00 -0.01 6.05 -35.63 -0.22 -0.23 16 6 C -0.21 -2.01 9.34 -39.71 -0.37 -2.38 16 7 C -0.21 -1.80 10.91 -39.71 -0.43 -2.24 16 8 C -0.05 -0.40 12.09 29.42 0.36 -0.04 16 9 O -0.18 -1.88 10.65 5.70 0.06 -1.82 16 10 C 0.52 7.63 6.68 -10.99 -0.07 7.56 16 11 O -0.53 -9.60 11.69 5.56 0.06 -9.53 16 12 N -0.60 -8.89 2.97 -165.22 -0.49 -9.38 16 13 C 0.10 1.15 6.09 -3.71 -0.02 1.13 16 14 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 15 C -0.12 -1.79 5.89 -26.69 -0.16 -1.95 16 16 C -0.12 -2.22 4.58 -26.61 -0.12 -2.34 16 17 C 0.12 2.26 3.21 -67.60 -0.22 2.05 16 18 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.16 3.53 3.68 -4.04 -0.01 3.51 16 20 N -0.61 -15.06 2.37 -181.11 -0.43 -15.49 16 21 C 0.10 2.27 8.43 59.85 0.50 2.78 16 22 C -0.25 -7.04 8.27 -15.06 -0.12 -7.16 16 23 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 24 C 0.02 0.63 5.22 -17.43 -0.09 0.54 16 25 N -0.91 -28.20 13.97 55.49 0.78 -27.43 16 26 Si 0.89 22.52 23.26 -169.99 -3.95 18.57 16 27 H -0.29 -7.23 6.60 56.52 0.37 -6.86 16 28 H -0.31 -7.94 7.11 56.52 0.40 -7.53 16 29 H -0.27 -6.50 6.43 56.52 0.36 -6.14 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.60 6.26 -51.93 -0.32 0.28 16 32 H 0.06 0.60 7.58 -51.92 -0.39 0.20 16 33 H 0.11 1.19 8.04 -51.93 -0.42 0.77 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.20 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.08 0.72 5.06 -51.93 -0.26 0.46 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 2.14 5.72 -51.93 -0.30 1.84 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.55 6.17 -51.93 -0.32 1.23 16 47 H 0.06 1.40 7.12 -51.93 -0.37 1.03 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 1.52 4.49 -51.92 -0.23 1.29 16 50 H 0.01 0.24 6.83 -51.93 -0.35 -0.12 16 51 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -32.58 382.53 -7.75 -40.33 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.43 Total: 2.23 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.12 Total: -3.24 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.15 Total: -52.30 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.13 Total: -11.35 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -3.95 Total: 18.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.58 -7.75 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158598253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds