Wall clock time and date at job start Tue Mar 31 2020 20:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47066 * 2 1 4 4 C 1.52999 * 109.47114 * 119.99433 * 2 1 3 5 5 C 1.50698 * 109.47220 * 295.00552 * 4 2 1 6 6 C 1.34506 * 125.79357 * 89.99735 * 5 4 2 7 7 C 1.41378 * 106.84314 * 180.02562 * 6 5 4 8 8 C 1.34512 * 106.84233 * 0.02562 * 7 6 5 9 9 O 1.34305 * 125.78615 * 269.68964 * 5 4 2 10 10 C 1.50694 * 109.47414 * 239.99769 * 2 1 3 11 11 O 1.21281 * 119.99950 * 262.91445 * 10 2 1 12 12 N 1.34778 * 120.00407 * 82.91014 * 10 2 1 13 13 C 1.46927 * 120.62719 * 4.49964 * 12 10 2 14 14 C 1.53197 * 108.77673 * 233.63152 * 13 12 10 15 15 C 1.53035 * 109.33941 * 305.38188 * 14 13 12 16 16 C 1.53039 * 109.53951 * 61.31380 * 15 14 13 17 17 C 1.46917 * 120.63753 * 184.52494 * 12 10 2 18 18 H 1.09000 * 109.59191 * 246.15832 * 17 12 10 19 19 C 1.53002 * 109.58394 * 6.58181 * 17 12 10 20 20 N 1.46502 * 109.47358 * 178.71812 * 19 17 12 21 21 C 1.46501 * 119.99846 * 87.42110 * 20 19 17 22 22 C 1.36932 * 120.00120 * 267.42660 * 20 19 17 23 23 H 1.08004 * 119.99851 * 327.50575 * 22 20 19 24 24 C 1.38811 * 120.00034 * 147.50425 * 22 20 19 25 25 N 1.31625 * 119.99848 * 166.22568 * 24 22 20 26 26 Si 1.86798 * 120.00296 * 346.22974 * 24 22 20 27 27 H 1.48495 * 109.47264 * 90.14826 * 26 24 22 28 28 H 1.48502 * 109.47411 * 210.15034 * 26 24 22 29 29 H 1.48502 * 109.46730 * 330.14748 * 26 24 22 30 30 H 1.08998 * 109.47276 * 177.43818 * 1 2 3 31 31 H 1.09002 * 109.47561 * 297.44444 * 1 2 3 32 32 H 1.09008 * 109.47198 * 57.44040 * 1 2 3 33 33 H 1.09003 * 109.46934 * 55.00425 * 4 2 1 34 34 H 1.09002 * 109.47247 * 174.99889 * 4 2 1 35 35 H 1.08002 * 126.57624 * 0.03590 * 6 5 4 36 36 H 1.08004 * 126.58137 * 179.97438 * 7 6 5 37 37 H 1.07998 * 125.79405 * 179.97438 * 8 7 6 38 38 H 1.09007 * 109.58873 * 353.41688 * 13 12 10 39 39 H 1.09000 * 109.59103 * 113.84664 * 13 12 10 40 40 H 1.09004 * 109.49555 * 65.31937 * 14 13 12 41 41 H 1.09007 * 109.49604 * 185.37850 * 14 13 12 42 42 H 1.09000 * 109.43198 * 301.30924 * 15 14 13 43 43 H 1.09002 * 109.48462 * 181.35463 * 15 14 13 44 44 H 1.08995 * 109.49747 * 178.71359 * 16 15 14 45 45 H 1.09003 * 109.49824 * 58.65258 * 16 15 14 46 46 H 1.08999 * 109.46837 * 298.71821 * 19 17 12 47 47 H 1.08998 * 109.47240 * 58.71689 * 19 17 12 48 48 H 1.09004 * 109.47003 * 54.45920 * 21 20 19 49 49 H 1.09008 * 109.47068 * 174.45754 * 21 20 19 50 50 H 1.09002 * 109.47714 * 294.45631 * 21 20 19 51 51 H 0.97001 * 119.99911 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 6 0.5008 -0.1006 3.1721 7 6 0.5390 0.8278 4.2376 8 6 1.7002 1.4979 4.1292 9 8 2.3669 1.0222 3.0648 10 6 2.0324 -0.7104 -1.2304 11 8 2.3567 -1.8773 -1.1669 12 7 2.1212 -0.0491 -2.4014 13 6 1.8262 1.3884 -2.4735 14 6 0.7742 1.6219 -3.5624 15 6 1.2638 1.0140 -4.8788 16 6 1.4548 -0.4946 -4.7061 17 6 2.5144 -0.7520 -3.6302 18 1 3.4800 -0.3789 -3.9716 19 6 2.6103 -2.2537 -3.3537 20 7 2.9726 -2.9554 -4.5876 21 6 4.3828 -3.1254 -4.9465 22 6 1.9933 -3.4522 -5.4056 23 1 1.0673 -3.8123 -4.9821 24 6 2.1906 -3.4929 -6.7790 25 7 1.3859 -4.2057 -7.5386 26 14 3.5980 -2.5363 -7.5493 27 1 4.8087 -3.3944 -7.6032 28 1 3.2218 -2.1240 -8.9254 29 1 3.8824 -1.3298 -6.7314 30 1 -0.3634 -1.0266 -0.0459 31 1 -0.3634 0.4736 0.9120 32 1 -0.3634 0.5531 -0.8662 33 1 1.6054 -1.7197 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 -0.2919 -0.8022 2.9578 36 1 -0.2192 0.9720 4.9932 37 1 2.0412 2.2818 4.7893 38 1 1.4403 1.7309 -1.5133 39 1 2.7355 1.9362 -2.7206 40 1 -0.1632 1.1486 -3.2701 41 1 0.6162 2.6926 -3.6921 42 1 2.2134 1.4706 -5.1580 43 1 0.5278 1.1998 -5.6610 44 1 1.7816 -0.9303 -5.6502 45 1 0.5112 -0.9485 -4.4033 46 1 3.3718 -2.4356 -2.5953 47 1 1.6476 -2.6197 -2.9969 48 1 4.9128 -3.6015 -4.1216 49 1 4.4585 -3.7507 -5.8362 50 1 4.8264 -2.1505 -5.1489 51 1 1.5240 -4.2344 -8.4983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158598253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:05 Heat of formation + Delta-G solvation = -4.951938 kcal Electronic energy + Delta-G solvation = -30621.573918 eV Core-core repulsion = 26716.164457 eV Total energy + Delta-G solvation = -3905.409461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.46413 -41.70025 -38.75735 -37.53294 -36.24036 -33.94677 -33.85897 -33.59593 -32.32062 -30.72032 -28.50556 -27.87788 -27.53862 -26.01044 -24.66755 -23.65621 -22.57499 -22.10666 -21.69405 -21.03444 -19.64516 -18.86619 -18.43683 -17.74664 -17.28698 -17.18740 -16.76401 -16.25880 -15.84694 -15.64201 -15.44181 -15.32168 -15.02129 -14.96166 -14.62604 -14.40695 -14.13503 -14.04446 -13.97230 -13.72496 -13.65470 -13.41913 -13.34276 -13.20705 -13.07586 -12.72128 -12.47250 -12.28910 -12.15889 -12.08635 -11.99746 -11.90381 -11.78846 -11.67061 -11.49833 -11.25056 -10.87044 -10.76669 -10.11218 -9.49741 -9.31237 -8.81870 -8.14443 -5.54509 0.83833 1.29938 1.38597 1.49375 1.65159 1.74461 1.96453 2.22275 2.41460 3.13695 3.36860 3.50234 3.74043 3.86146 3.92796 3.96415 4.00054 4.08048 4.16747 4.21121 4.28476 4.32584 4.37276 4.47464 4.49116 4.61582 4.63973 4.67523 4.72805 4.76328 4.81511 4.87363 4.89746 4.96405 5.01219 5.03534 5.07779 5.10815 5.12949 5.19318 5.25135 5.29960 5.33173 5.38958 5.54188 5.67441 5.73024 5.92407 6.13915 6.28110 6.52805 6.93758 7.25348 7.64238 8.03290 9.06074 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.003036 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.217762 B = 9221.766935 C = 9743.778019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.116 0.884 4 C -0.018 4.018 5 C -0.020 4.020 6 C -0.213 4.213 7 C -0.226 4.226 8 C -0.043 4.043 9 O -0.192 6.192 10 C 0.510 3.490 11 O -0.569 6.569 12 N -0.603 5.603 13 C 0.099 3.901 14 C -0.126 4.126 15 C -0.120 4.120 16 C -0.113 4.113 17 C 0.134 3.866 18 H 0.060 0.940 19 C 0.174 3.826 20 N -0.626 5.626 21 C 0.098 3.902 22 C -0.236 4.236 23 H 0.036 0.964 24 C -0.031 4.031 25 N -0.964 5.964 26 Si 0.953 3.047 27 H -0.279 1.279 28 H -0.313 1.313 29 H -0.249 1.249 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.030 0.970 48 H 0.043 0.957 49 H 0.047 0.953 50 H 0.031 0.969 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 20.139 21.426 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.134 0.866 4 C -0.056 4.056 5 C -0.069 4.069 6 C -0.232 4.232 7 C -0.245 4.245 8 C -0.110 4.110 9 O -0.089 6.089 10 C 0.300 3.700 11 O -0.448 6.448 12 N -0.336 5.336 13 C -0.023 4.023 14 C -0.164 4.164 15 C -0.158 4.158 16 C -0.151 4.151 17 C 0.029 3.971 18 H 0.078 0.922 19 C 0.049 3.951 20 N -0.352 5.352 21 C -0.047 4.047 22 C -0.366 4.366 23 H 0.054 0.946 24 C -0.225 4.225 25 N -0.610 5.610 26 Si 0.782 3.218 27 H -0.206 1.206 28 H -0.242 1.242 29 H -0.173 1.173 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.251 0.749 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.049 0.951 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.368 19.577 21.234 28.884 hybrid contribution 0.117 -0.481 -1.005 1.120 sum 0.485 19.096 20.229 27.823 Atomic orbital electron populations 1.21813 0.91276 1.02715 1.03959 1.21267 0.98828 1.01027 0.90335 0.86641 1.19824 1.02187 0.97005 0.86566 1.22288 0.92663 0.93781 0.98188 1.21854 0.99395 1.04023 0.97940 1.22158 1.00501 0.99713 1.02140 1.24761 0.93243 1.02329 0.90671 1.84020 1.44738 1.43484 1.36681 1.21122 0.77034 0.86821 0.85050 1.90738 1.50525 1.18379 1.85186 1.48394 1.67176 1.10820 1.07167 1.22129 0.99685 0.78991 1.01450 1.21896 0.98255 1.02455 0.93754 1.21570 1.01655 0.93872 0.98655 1.21720 0.97812 0.96915 0.98701 1.21848 0.96594 0.94287 0.84409 0.92212 1.21405 0.99433 0.88798 0.85438 1.44543 1.01447 1.64241 1.24950 1.21493 0.85136 0.98636 0.99407 1.18623 0.97346 1.32897 0.87700 0.94594 1.26016 1.00401 0.99679 0.96435 1.69932 1.42269 1.43599 1.05230 0.85885 0.79145 0.80596 0.76154 1.20578 1.24220 1.17285 0.93152 0.89538 0.91081 0.88694 0.90500 0.82879 0.81625 0.74868 0.86935 0.89918 0.92014 0.87667 0.91574 0.91783 0.92781 0.94391 0.91170 0.95199 0.93837 0.93468 0.95118 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.81 71.98 0.63 -1.85 16 2 C -0.09 -1.86 1.86 -11.54 -0.02 -1.89 16 3 H 0.12 1.79 6.40 -2.38 -0.02 1.77 16 4 C -0.02 -0.38 4.64 29.85 0.14 -0.24 16 5 C -0.02 -0.38 6.05 24.83 0.15 -0.23 16 6 C -0.21 -3.69 9.34 22.19 0.21 -3.48 16 7 C -0.23 -3.20 10.91 22.19 0.24 -2.96 16 8 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 9 O -0.19 -3.64 10.65 -2.53 -0.03 -3.66 16 10 C 0.51 14.79 6.68 87.66 0.59 15.38 16 11 O -0.57 -21.41 11.69 -3.03 -0.04 -21.45 16 12 N -0.60 -16.92 2.97 -795.02 -2.36 -19.28 16 13 C 0.10 1.81 6.09 86.36 0.53 2.34 16 14 C -0.13 -2.39 6.08 30.67 0.19 -2.20 16 15 C -0.12 -3.24 5.89 30.62 0.18 -3.06 16 16 C -0.11 -4.30 4.58 30.67 0.14 -4.16 16 17 C 0.13 4.91 3.21 44.98 0.14 5.05 16 18 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 19 C 0.17 7.78 3.68 86.38 0.32 8.09 16 20 N -0.63 -31.55 2.37 -726.91 -1.72 -33.28 16 21 C 0.10 4.39 8.43 127.77 1.08 5.47 16 22 C -0.24 -13.90 8.27 84.03 0.70 -13.20 16 23 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 24 C -0.03 -1.85 5.22 84.86 0.44 -1.41 16 25 N -0.96 -62.04 13.97 21.65 0.30 -61.74 16 26 Si 0.95 47.21 23.26 68.60 1.60 48.80 16 27 H -0.28 -13.23 6.60 99.48 0.66 -12.57 16 28 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 29 H -0.25 -11.40 6.43 99.48 0.64 -10.76 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.28 6.26 -2.39 -0.01 1.26 16 32 H 0.07 1.15 7.58 -2.38 -0.02 1.14 16 33 H 0.09 2.18 8.04 -2.39 -0.02 2.16 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.11 1.42 5.06 -2.38 -0.01 1.41 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 2.49 5.72 -2.39 -0.01 2.48 16 45 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.07 3.15 6.17 -2.39 -0.01 3.14 16 47 H 0.03 1.49 7.12 -2.39 -0.02 1.47 16 48 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.05 2.26 4.49 -2.38 -0.01 2.25 16 50 H 0.03 1.27 6.83 -2.39 -0.02 1.25 16 51 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -75.80 382.53 5.00 -70.81 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.79 Total: 17.90 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.46 Total: 1.90 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.78 Total: -114.30 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.60 Total: 48.80 kcal Total: -75.80 5.00 -70.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158598253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.855 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds