Wall clock time and date at job start Tue Mar 31 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09012 * 109.46638 * 2 1 4 4 C 1.52998 * 109.47458 * 119.99440 * 2 1 3 5 5 C 1.50697 * 109.47568 * 295.00744 * 4 2 1 6 6 C 1.34515 * 125.79159 * 89.99160 * 5 4 2 7 7 C 1.41385 * 106.84000 * 180.02562 * 6 5 4 8 8 C 1.34507 * 106.84104 * 0.02562 * 7 6 5 9 9 O 1.34300 * 108.42410 * 359.97438 * 8 7 6 10 10 C 1.50695 * 109.47546 * 240.00251 * 2 1 3 11 11 O 1.21282 * 120.00116 * 239.99824 * 10 2 1 12 12 N 1.34774 * 120.00181 * 59.99223 * 10 2 1 13 13 C 1.48152 * 127.83686 * 359.69005 * 12 10 2 14 14 C 1.54793 * 104.41836 * 140.36497 * 13 12 10 15 15 H 1.09002 * 110.20170 * 142.93916 * 14 13 12 16 16 C 1.52997 * 110.61023 * 265.17860 * 14 13 12 17 17 C 1.54283 * 104.91904 * 24.16359 * 14 13 12 18 18 C 1.53004 * 110.42933 * 240.89172 * 17 14 13 19 19 C 1.52998 * 110.34392 * 118.68199 * 17 14 13 20 20 N 1.46497 * 109.47304 * 183.00884 * 19 17 14 21 21 C 1.36936 * 119.99764 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00318 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99970 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99792 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00303 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46892 * 89.99804 * 25 23 21 27 27 H 1.48497 * 109.47111 * 209.99496 * 25 23 21 28 28 H 1.48497 * 109.47134 * 329.99988 * 25 23 21 29 29 C 1.48147 * 127.84016 * 180.02562 * 12 10 2 30 30 H 1.08995 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47272 * 299.99691 * 1 2 3 32 32 H 1.09002 * 109.46913 * 59.99871 * 1 2 3 33 33 H 1.09002 * 109.47333 * 174.99956 * 4 2 1 34 34 H 1.09010 * 109.46653 * 55.00277 * 4 2 1 35 35 H 1.08001 * 126.57671 * 0.29417 * 6 5 4 36 36 H 1.08003 * 126.57418 * 180.02562 * 7 6 5 37 37 H 1.08001 * 125.78820 * 179.97438 * 8 7 6 38 38 H 1.08999 * 110.40419 * 259.19650 * 13 12 10 39 39 H 1.08994 * 110.40878 * 21.62214 * 13 12 10 40 40 H 1.09003 * 109.47241 * 175.64941 * 16 14 13 41 41 H 1.09002 * 109.47512 * 295.64475 * 16 14 13 42 42 H 1.08997 * 109.47341 * 55.64894 * 16 14 13 43 43 H 1.09000 * 109.46821 * 177.04610 * 18 17 14 44 44 H 1.09000 * 109.47396 * 297.04570 * 18 17 14 45 45 H 1.08997 * 109.47055 * 57.04736 * 18 17 14 46 46 H 1.09004 * 109.47075 * 303.00907 * 19 17 14 47 47 H 1.09000 * 109.47351 * 63.00475 * 19 17 14 48 48 H 0.97000 * 120.00283 * 359.97438 * 20 19 17 49 49 H 0.97000 * 120.00033 * 180.02562 * 24 23 21 50 50 H 1.09004 * 110.40733 * 338.37376 * 29 12 10 51 51 H 1.08997 * 110.40636 * 100.68971 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6414 0.0571 2.4766 6 6 0.5009 -0.1008 3.1722 7 6 0.5391 0.8276 4.2378 8 6 1.7004 1.4976 4.1294 9 8 2.3640 1.0267 3.0610 10 6 2.0324 -0.7103 -1.2304 11 8 2.7298 -1.6964 -1.1192 12 7 1.7068 -0.2499 -2.4545 13 6 0.8684 0.9244 -2.7904 14 6 1.5826 1.5746 -4.0001 15 1 0.8487 1.9645 -4.7054 16 6 2.5189 2.6920 -3.5359 17 6 2.3916 0.4304 -4.6456 18 6 3.8864 0.7564 -4.6263 19 6 1.9194 0.1889 -6.0807 20 7 2.6492 -0.9463 -6.6505 21 6 2.3935 -1.3502 -7.9337 22 1 1.6536 -0.8320 -8.5256 23 6 3.0855 -2.4255 -8.4738 24 7 3.9877 -3.0567 -7.7527 25 14 2.7362 -2.9769 -10.2241 26 1 3.6315 -2.2503 -11.1599 27 1 2.9786 -4.4373 -10.3407 28 1 1.3210 -2.6814 -10.5631 29 6 2.1004 -0.8073 -3.7695 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7993 1.2056 34 1 1.6055 -1.7198 1.2952 35 1 -0.2901 -0.8050 2.9600 36 1 -0.2187 0.9711 4.9938 37 1 2.0413 2.2815 4.7895 38 1 -0.1375 0.6071 -3.0653 39 1 0.8326 1.6185 -1.9508 40 1 3.0686 3.0842 -4.3915 41 1 1.9333 3.4919 -3.0827 42 1 3.2217 2.2961 -2.8029 43 1 4.4467 -0.0833 -5.0375 44 1 4.0720 1.6463 -5.2276 45 1 4.2054 0.9383 -3.6001 46 1 0.8514 -0.0292 -6.0800 47 1 2.1078 1.0797 -6.6800 48 1 3.3141 -1.4115 -6.1190 49 1 4.4714 -3.8080 -8.1302 50 1 2.9955 -1.4214 -3.6695 51 1 1.2845 -1.3923 -4.1939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182876969.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:24 Heat of formation + Delta-G solvation = -33.626200 kcal Electronic energy + Delta-G solvation = -29687.620919 eV Core-core repulsion = 25780.968049 eV Total energy + Delta-G solvation = -3906.652870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.48009 -41.60798 -39.71974 -36.52462 -36.18143 -34.56145 -33.73227 -33.05016 -31.40887 -30.76643 -28.59681 -27.59902 -27.27452 -26.59943 -25.21189 -23.87101 -22.60703 -22.27920 -21.25241 -20.24017 -19.82132 -18.98359 -18.45285 -17.68528 -17.26045 -17.06913 -16.59287 -16.27709 -15.98101 -15.68383 -15.49448 -15.15311 -14.97164 -14.72338 -14.52670 -14.42004 -13.89345 -13.86293 -13.67886 -13.56293 -13.41419 -13.35732 -13.12598 -13.04229 -12.86847 -12.76337 -12.58499 -12.48901 -12.39603 -12.22162 -12.09350 -12.06092 -11.94792 -11.46107 -11.35983 -11.19155 -10.93434 -10.82091 -10.75966 -9.73755 -9.33408 -8.96944 -7.93147 -5.21588 0.81892 1.46772 1.48700 1.57065 1.57211 1.72175 1.90184 2.20648 2.56706 3.30931 3.40630 3.56642 3.59922 3.73415 3.81288 3.90785 4.02742 4.18168 4.19814 4.25927 4.28281 4.30925 4.31805 4.36107 4.56211 4.59963 4.64667 4.72383 4.74402 4.79415 4.84313 4.87926 4.90233 4.98392 5.00288 5.03456 5.07103 5.09303 5.09992 5.15204 5.26487 5.27329 5.28208 5.38803 5.45654 5.52153 5.60609 5.67071 6.26982 6.28454 6.58263 7.09662 7.34855 8.12500 8.33970 9.30545 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002358 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.038213 B =11871.752899 C =12340.686178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.114 0.886 4 C -0.019 4.019 5 C -0.023 4.023 6 C -0.208 4.208 7 C -0.224 4.224 8 C -0.045 4.045 9 O -0.196 6.196 10 C 0.530 3.470 11 O -0.592 6.592 12 N -0.614 5.614 13 C 0.102 3.898 14 C -0.091 4.091 15 H 0.105 0.895 16 C -0.139 4.139 17 C -0.066 4.066 18 C -0.122 4.122 19 C 0.167 3.833 20 N -0.744 5.744 21 C -0.239 4.239 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.973 3.027 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.267 1.267 29 C 0.124 3.876 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.025 0.975 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.043 0.957 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 16.254 23.637 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.132 0.868 4 C -0.056 4.056 5 C -0.073 4.073 6 C -0.227 4.227 7 C -0.243 4.243 8 C -0.112 4.112 9 O -0.093 6.093 10 C 0.321 3.679 11 O -0.473 6.473 12 N -0.346 5.346 13 C -0.020 4.020 14 C -0.110 4.110 15 H 0.124 0.876 16 C -0.196 4.196 17 C -0.068 4.068 18 C -0.180 4.180 19 C 0.040 3.960 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.192 1.192 29 C 0.001 3.999 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.205 0.795 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.318 15.816 23.535 30.175 hybrid contribution 0.544 -1.350 -0.996 1.764 sum -9.774 14.467 22.539 28.510 Atomic orbital electron populations 1.21989 0.90566 1.03281 1.04588 1.21161 0.99454 1.00710 0.89523 0.86829 1.19805 1.02130 0.96984 0.86726 1.22285 0.92865 0.93740 0.98362 1.21864 0.99174 1.03911 0.97781 1.22166 1.00308 0.99696 1.02142 1.24771 0.93426 1.02481 0.90502 1.84026 1.45227 1.43393 1.36611 1.20858 0.79154 0.83846 0.84076 1.90712 1.40797 1.29016 1.86732 1.49033 1.50763 1.30516 1.04290 1.22961 0.94144 0.86495 0.98364 1.22240 0.97789 0.94259 0.96735 0.87642 1.21879 0.99167 0.97230 1.01307 1.21576 0.96471 0.94762 0.93958 1.21766 0.94366 1.00878 1.00957 1.20906 0.94364 0.89674 0.91036 1.42634 1.46982 1.35896 1.13177 1.19652 1.16534 1.09986 0.90882 0.90296 1.25587 0.99692 0.99571 1.02357 1.69842 1.29676 1.24738 1.38100 0.85139 0.78090 0.76501 0.80034 1.21481 1.22647 1.19152 1.22167 0.99325 0.95959 0.82435 0.92453 0.89656 0.90034 0.91049 0.88518 0.82412 0.81445 0.75012 0.89132 0.86997 0.92269 0.90115 0.93428 0.95615 0.91375 0.92298 0.95467 0.95315 0.79515 0.94225 0.93802 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.65 71.98 0.62 -1.45 16 2 C -0.09 -1.68 2.05 -11.54 -0.02 -1.70 16 3 H 0.11 1.86 7.96 -2.38 -0.02 1.84 16 4 C -0.02 -0.39 4.57 29.85 0.14 -0.26 16 5 C -0.02 -0.43 6.05 24.83 0.15 -0.28 16 6 C -0.21 -3.30 9.40 22.19 0.21 -3.10 16 7 C -0.22 -2.95 10.91 22.19 0.24 -2.71 16 8 C -0.05 -0.59 12.09 66.97 0.81 0.22 16 9 O -0.20 -3.78 10.65 -2.50 -0.03 -3.80 16 10 C 0.53 15.22 7.27 87.66 0.64 15.85 16 11 O -0.59 -23.01 16.19 -3.04 -0.05 -23.06 16 12 N -0.61 -16.45 3.30 -807.10 -2.67 -19.11 16 13 C 0.10 1.79 4.83 86.67 0.42 2.21 16 14 C -0.09 -1.82 3.30 -9.75 -0.03 -1.85 16 15 H 0.11 1.83 7.71 -2.39 -0.02 1.82 16 16 C -0.14 -2.36 7.95 71.98 0.57 -1.79 16 17 C -0.07 -2.03 0.73 -51.26 -0.04 -2.06 16 18 C -0.12 -3.98 7.08 71.98 0.51 -3.47 16 19 C 0.17 6.30 4.85 86.38 0.42 6.72 16 20 N -0.74 -37.63 5.12 -343.46 -1.76 -39.39 16 21 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 25 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 C 0.12 4.31 5.54 86.54 0.48 4.79 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.01 6.41 -2.39 -0.02 0.99 16 32 H 0.08 0.94 5.33 -2.39 -0.01 0.92 16 33 H 0.07 1.75 7.96 -2.39 -0.02 1.73 16 34 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.23 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.09 1.37 8.02 -2.39 -0.02 1.35 16 39 H 0.11 1.29 6.28 -2.39 -0.02 1.28 16 40 H 0.06 1.08 6.89 -2.39 -0.02 1.06 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 0.91 6.73 -2.39 -0.02 0.90 16 43 H 0.02 1.02 6.99 -2.39 -0.02 1.00 16 44 H 0.07 2.02 6.99 -2.39 -0.02 2.00 16 45 H 0.06 1.76 6.63 -2.39 -0.02 1.74 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.37 20.61 6.27 -92.71 -0.58 20.03 16 49 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 50 H 0.04 1.86 7.60 -2.39 -0.02 1.84 16 51 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 Total: -1.00 -76.07 396.62 4.57 -71.50 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.34 Total: 31.62 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 6.42 Total: -5.56 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -4.14 Total: -119.57 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.08 Total: -26.87 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -76.07 4.57 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182876969.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.870 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds