Wall clock time and date at job start Tue Mar 31 2020 17:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.56714 * 2 1 4 4 C 1.53083 * 117.51255 * 214.29125 * 2 1 3 5 5 C 1.53008 * 59.98450 * 252.52695 * 4 2 1 6 6 H 1.08994 * 117.49432 * 252.50075 * 5 4 2 7 7 C 1.52992 * 117.49463 * 107.50036 * 5 4 2 8 8 H 1.08995 * 115.56750 * 325.56651 * 7 5 4 9 9 C 1.53080 * 117.51300 * 179.85929 * 7 5 4 10 10 C 1.52999 * 59.98404 * 252.52487 * 9 7 5 11 11 H 1.09001 * 117.49842 * 252.49728 * 10 9 7 12 12 C 1.53003 * 117.50036 * 107.50122 * 10 9 7 13 13 N 1.46497 * 109.47473 * 116.24994 * 12 10 9 14 14 C 1.34772 * 120.00347 * 179.97438 * 13 12 10 15 15 O 1.21352 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.49452 * 120.00153 * 179.72204 * 14 13 12 17 17 O 1.21350 * 119.99819 * 7.02995 * 16 14 13 18 18 N 1.34781 * 119.99941 * 187.02312 * 16 14 13 19 19 C 1.46926 * 120.63151 * 8.42862 * 18 16 14 20 20 C 1.53620 * 108.54424 * 126.37049 * 19 18 16 21 21 C 1.53039 * 109.24260 * 54.85462 * 20 19 18 22 22 C 1.50699 * 109.45937 * 178.49562 * 21 20 19 23 23 H 1.07999 * 120.00444 * 120.06892 * 22 21 20 24 24 C 1.37875 * 119.99628 * 300.06470 * 22 21 20 25 25 N 1.31510 * 120.00182 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99976 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46869 * 89.99827 * 26 24 22 28 28 H 1.48490 * 109.47277 * 210.00169 * 26 24 22 29 29 H 1.48504 * 109.46798 * 330.00391 * 26 24 22 30 30 C 1.53045 * 109.53932 * 298.51277 * 21 20 19 31 31 C 1.46925 * 120.62678 * 188.70864 * 18 16 14 32 32 H 1.08994 * 109.47685 * 274.31683 * 1 2 3 33 33 H 1.09000 * 109.46771 * 34.31766 * 1 2 3 34 34 H 1.09008 * 109.47156 * 154.30922 * 1 2 3 35 35 H 1.08997 * 117.49003 * 145.04236 * 4 2 1 36 36 H 1.09001 * 117.51265 * 0.02562 * 4 2 1 37 37 H 1.08997 * 117.49635 * 145.03448 * 9 7 5 38 38 H 1.09000 * 117.51126 * 0.02562 * 9 7 5 39 39 H 1.09006 * 109.47117 * 356.25053 * 12 10 9 40 40 H 1.08996 * 109.47214 * 236.25218 * 12 10 9 41 41 H 0.97002 * 119.99650 * 0.02562 * 13 12 10 42 42 H 1.08996 * 109.58306 * 246.20494 * 19 18 16 43 43 H 1.09005 * 109.58444 * 6.62472 * 19 18 16 44 44 H 1.09002 * 109.62808 * 294.86385 * 20 19 18 45 45 H 1.08995 * 109.43541 * 174.72735 * 20 19 18 46 46 H 1.08999 * 109.44820 * 58.52196 * 21 20 19 47 47 H 0.97004 * 119.99978 * 179.97438 * 25 24 22 48 48 H 1.09000 * 109.49820 * 301.41906 * 30 21 20 49 49 H 1.08996 * 109.52504 * 181.32975 * 30 21 20 50 50 H 1.08999 * 109.58807 * 353.37394 * 31 18 16 51 51 H 1.09007 * 109.58614 * 113.65577 * 31 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7649 5 6 2.2364 -1.1210 0.7652 6 1 3.1712 -0.8751 1.2687 7 6 1.3587 -2.1561 1.4715 8 1 0.4230 -2.4009 0.9689 9 6 1.3601 -2.1580 3.0023 10 6 2.0650 -3.2783 2.2349 11 1 1.5942 -4.2614 2.2342 12 6 3.5950 -3.2795 2.2334 13 7 4.0832 -4.4837 2.9099 14 6 5.4082 -4.6996 3.0288 15 8 6.1969 -3.8963 2.5760 16 6 5.9061 -5.9251 3.7245 17 8 5.1245 -6.7870 4.0691 18 7 7.2233 -6.0729 3.9689 19 6 8.1585 -4.9658 3.7272 20 6 8.9632 -4.7166 5.0118 21 6 9.6337 -6.0213 5.4480 22 6 10.4545 -5.7740 6.6874 23 1 10.2342 -6.3123 7.5974 24 6 11.4868 -4.8606 6.6595 25 7 11.7549 -4.2048 5.5516 26 14 12.5048 -4.5545 8.1957 27 1 13.6607 -5.4866 8.2173 28 1 12.9983 -3.1540 8.1915 29 1 11.6646 -4.7798 9.3993 30 6 8.5622 -7.0723 5.7474 31 6 7.7521 -7.3463 4.4764 32 1 -0.3634 0.0773 1.0247 33 1 -0.3633 0.8488 -0.5794 34 1 -0.3634 -0.9261 -0.4455 35 1 3.1724 -0.8758 -1.2678 36 1 1.6123 -1.8594 -1.2685 37 1 0.4254 -2.4038 3.5061 38 1 1.9861 -1.4215 3.5061 39 1 3.9596 -2.3956 2.7569 40 1 3.9574 -3.2681 1.2055 41 1 3.4527 -5.1261 3.2716 42 1 8.8349 -5.2299 2.9143 43 1 7.6005 -4.0672 3.4636 44 1 8.2957 -4.3692 5.8004 45 1 9.7259 -3.9616 4.8213 46 1 10.2818 -6.3811 4.6489 47 1 12.4810 -3.5618 5.5321 48 1 7.8985 -6.7027 6.5291 49 1 9.0390 -7.9940 6.0807 50 1 6.9260 -8.0189 4.7075 51 1 8.3942 -7.8018 3.7225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262147459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:33 Heat of formation + Delta-G solvation = -20.259494 kcal Electronic energy + Delta-G solvation = -28725.142403 eV Core-core repulsion = 24819.069157 eV Total energy + Delta-G solvation = -3906.073246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.66071 -39.51863 -38.39004 -36.98497 -36.53716 -34.36206 -33.35255 -31.20895 -30.01981 -28.88822 -28.04641 -26.36302 -24.18602 -24.02649 -22.45232 -22.12568 -21.90593 -21.20360 -20.16975 -19.31588 -18.65524 -17.16276 -16.99575 -16.50477 -16.18001 -15.91477 -15.61400 -15.26610 -14.58347 -14.51791 -14.34238 -14.09295 -13.77587 -13.53798 -13.20885 -13.15988 -13.01173 -12.84097 -12.82284 -12.60017 -12.30323 -11.86625 -11.78889 -11.73809 -11.53255 -11.34924 -11.25479 -10.96135 -10.86845 -10.72969 -10.59275 -10.36247 -10.10454 -10.06065 -9.74749 -9.66557 -9.25074 -9.21027 -9.16167 -8.59028 -8.33933 -8.05628 -5.99670 -4.06235 1.64683 2.51279 3.07777 3.29951 3.36989 3.40211 3.43847 3.70069 3.81600 4.03896 4.33486 4.43021 4.44325 4.52028 4.57184 4.80259 4.87893 4.89715 4.92197 4.99705 5.29882 5.33444 5.42002 5.43621 5.46825 5.49573 5.50960 5.64791 5.67813 5.76495 5.78828 5.86647 5.91520 5.92465 5.95418 6.08825 6.15326 6.26748 6.45055 6.61228 6.71995 6.80083 6.99916 7.14453 7.18052 7.32475 7.67897 7.78779 7.91507 7.96696 8.08820 8.27508 8.43066 8.97054 9.58572 11.05695 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002157 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.123304 B =12977.980519 C =13842.904539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.151 4.151 3 H 0.103 0.897 4 C -0.172 4.172 5 C -0.126 4.126 6 H 0.107 0.893 7 C -0.106 4.106 8 H 0.108 0.892 9 C -0.167 4.167 10 C -0.164 4.164 11 H 0.113 0.887 12 C 0.151 3.849 13 N -0.703 5.703 14 C 0.509 3.491 15 O -0.506 6.506 16 C 0.500 3.500 17 O -0.545 6.545 18 N -0.562 5.562 19 C 0.065 3.935 20 C -0.122 4.122 21 C 0.046 3.954 22 C -0.512 4.512 23 H 0.055 0.945 24 C 0.061 3.939 25 N -0.890 5.890 26 Si 0.891 3.109 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.275 1.275 30 C -0.122 4.122 31 C 0.107 3.893 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.123 0.877 44 H 0.036 0.964 45 H 0.105 0.895 46 H 0.028 0.972 47 H 0.260 0.740 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.112 5.357 -11.118 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.169 4.169 3 H 0.122 0.878 4 C -0.209 4.209 5 C -0.144 4.144 6 H 0.126 0.874 7 C -0.124 4.124 8 H 0.126 0.874 9 C -0.204 4.204 10 C -0.183 4.183 11 H 0.131 0.869 12 C 0.028 3.972 13 N -0.357 5.357 14 C 0.290 3.710 15 O -0.382 6.382 16 C 0.282 3.718 17 O -0.425 6.425 18 N -0.293 5.293 19 C -0.055 4.055 20 C -0.161 4.161 21 C 0.027 3.973 22 C -0.551 4.551 23 H 0.073 0.927 24 C -0.140 4.140 25 N -0.529 5.529 26 Si 0.719 3.281 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.200 1.200 30 C -0.160 4.160 31 C -0.015 4.015 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.140 0.860 44 H 0.055 0.945 45 H 0.123 0.877 46 H 0.046 0.954 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.791 5.630 -11.333 25.198 hybrid contribution 0.468 -0.103 1.006 1.114 sum -21.322 5.527 -10.327 24.328 Atomic orbital electron populations 1.21336 0.92878 1.01689 1.01884 1.22371 0.95443 0.94416 1.04680 0.87839 1.23126 1.02685 1.01326 0.93752 1.21854 1.00155 0.98641 0.93723 0.87447 1.21792 0.99569 0.97341 0.93736 0.87370 1.23189 1.02651 1.00884 0.93698 1.22520 0.93888 0.95571 1.06275 0.86880 1.20964 0.91053 0.87252 0.97967 1.45776 1.06733 1.24822 1.58340 1.20384 0.82944 0.86884 0.80742 1.90555 1.53642 1.46723 1.47265 1.19885 0.83629 0.87041 0.81250 1.90690 1.55026 1.43878 1.52884 1.48222 1.05821 1.15444 1.59849 1.23195 0.92468 0.89788 1.00048 1.22101 0.98227 1.02738 0.92999 1.18683 0.91482 0.90292 0.96834 1.21190 1.14286 1.22627 0.96966 0.92720 1.24970 0.97176 0.95888 0.95999 1.69846 1.30313 1.26587 1.26143 0.86617 0.80504 0.77388 0.83614 1.20740 1.21254 1.20015 1.22005 0.98281 1.00951 0.94771 1.21888 0.98044 0.84189 0.97352 0.92046 0.92391 0.92626 0.88654 0.88720 0.88413 0.88264 0.90838 0.90433 0.75226 0.91983 0.86026 0.94506 0.87667 0.95419 0.92964 0.92832 0.91901 0.90122 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.04 37.16 0.34 -0.33 16 2 C -0.15 -0.99 6.41 -90.57 -0.58 -1.57 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.17 -1.18 9.90 -26.68 -0.26 -1.44 16 5 C -0.13 -0.90 5.10 -90.61 -0.46 -1.37 16 6 H 0.11 0.85 7.35 -51.93 -0.38 0.47 16 7 C -0.11 -0.71 5.18 -90.58 -0.47 -1.18 16 8 H 0.11 0.65 7.19 -51.93 -0.37 0.28 16 9 C -0.17 -1.13 9.90 -26.69 -0.26 -1.39 16 10 C -0.16 -1.22 5.84 -90.62 -0.53 -1.75 16 11 H 0.11 0.76 8.04 -51.93 -0.42 0.34 16 12 C 0.15 1.49 4.76 -4.04 -0.02 1.47 16 13 N -0.70 -8.43 5.55 -60.73 -0.34 -8.77 16 14 C 0.51 8.03 7.74 -11.59 -0.09 7.94 16 15 O -0.51 -8.93 13.18 5.49 0.07 -8.86 16 16 C 0.50 8.92 7.73 -11.58 -0.09 8.83 16 17 O -0.55 -10.17 15.93 5.50 0.09 -10.08 16 18 N -0.56 -10.67 2.97 -173.01 -0.51 -11.18 16 19 C 0.07 1.32 6.01 -3.49 -0.02 1.29 16 20 C -0.12 -2.86 5.17 -26.39 -0.14 -2.99 16 21 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 22 C -0.51 -13.87 8.56 -34.44 -0.29 -14.17 16 23 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 24 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 25 N -0.89 -24.98 11.30 55.43 0.63 -24.35 16 26 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 31 C 0.11 1.96 6.44 -3.71 -0.02 1.94 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.29 7.40 -51.92 -0.38 -0.09 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 39 H 0.07 0.77 7.62 -51.93 -0.40 0.38 16 40 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 41 H 0.41 4.41 7.89 -40.82 -0.32 4.08 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.12 2.42 4.30 -54.85 -0.24 2.19 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.11 2.74 6.03 -51.93 -0.31 2.42 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 51 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -29.70 402.80 -10.98 -40.68 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.63 Total: 5.24 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.33 Total: -4.89 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.22 Total: -44.30 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.70 -10.98 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262147459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.419 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds