Wall clock time and date at job start Tue Mar 31 2020 17:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.56714 * 2 1 4 4 C 1.53083 * 117.51255 * 214.29125 * 2 1 3 5 5 C 1.53008 * 59.98450 * 252.52695 * 4 2 1 6 6 H 1.08994 * 117.49432 * 252.50075 * 5 4 2 7 7 C 1.52992 * 117.49463 * 107.50036 * 5 4 2 8 8 H 1.08995 * 115.56750 * 325.56651 * 7 5 4 9 9 C 1.53080 * 117.51300 * 179.85929 * 7 5 4 10 10 C 1.52999 * 59.98404 * 252.52487 * 9 7 5 11 11 H 1.09001 * 117.49842 * 252.49728 * 10 9 7 12 12 C 1.53003 * 117.50036 * 107.50122 * 10 9 7 13 13 N 1.46497 * 109.47473 * 116.24994 * 12 10 9 14 14 C 1.34772 * 120.00347 * 179.97438 * 13 12 10 15 15 O 1.21352 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.49452 * 120.00153 * 179.72204 * 14 13 12 17 17 O 1.21350 * 119.99819 * 7.02995 * 16 14 13 18 18 N 1.34781 * 119.99941 * 187.02312 * 16 14 13 19 19 C 1.46926 * 120.63151 * 8.42862 * 18 16 14 20 20 C 1.53620 * 108.54424 * 126.37049 * 19 18 16 21 21 C 1.53039 * 109.24260 * 54.85462 * 20 19 18 22 22 C 1.50699 * 109.45937 * 178.49562 * 21 20 19 23 23 H 1.07999 * 120.00444 * 120.06892 * 22 21 20 24 24 C 1.37875 * 119.99628 * 300.06470 * 22 21 20 25 25 N 1.31510 * 120.00182 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99976 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46869 * 89.99827 * 26 24 22 28 28 H 1.48490 * 109.47277 * 210.00169 * 26 24 22 29 29 H 1.48504 * 109.46798 * 330.00391 * 26 24 22 30 30 C 1.53045 * 109.53932 * 298.51277 * 21 20 19 31 31 C 1.46925 * 120.62678 * 188.70864 * 18 16 14 32 32 H 1.08994 * 109.47685 * 274.31683 * 1 2 3 33 33 H 1.09000 * 109.46771 * 34.31766 * 1 2 3 34 34 H 1.09008 * 109.47156 * 154.30922 * 1 2 3 35 35 H 1.08997 * 117.49003 * 145.04236 * 4 2 1 36 36 H 1.09001 * 117.51265 * 0.02562 * 4 2 1 37 37 H 1.08997 * 117.49635 * 145.03448 * 9 7 5 38 38 H 1.09000 * 117.51126 * 0.02562 * 9 7 5 39 39 H 1.09006 * 109.47117 * 356.25053 * 12 10 9 40 40 H 1.08996 * 109.47214 * 236.25218 * 12 10 9 41 41 H 0.97002 * 119.99650 * 0.02562 * 13 12 10 42 42 H 1.08996 * 109.58306 * 246.20494 * 19 18 16 43 43 H 1.09005 * 109.58444 * 6.62472 * 19 18 16 44 44 H 1.09002 * 109.62808 * 294.86385 * 20 19 18 45 45 H 1.08995 * 109.43541 * 174.72735 * 20 19 18 46 46 H 1.08999 * 109.44820 * 58.52196 * 21 20 19 47 47 H 0.97004 * 119.99978 * 179.97438 * 25 24 22 48 48 H 1.09000 * 109.49820 * 301.41906 * 30 21 20 49 49 H 1.08996 * 109.52504 * 181.32975 * 30 21 20 50 50 H 1.08999 * 109.58807 * 353.37394 * 31 18 16 51 51 H 1.09007 * 109.58614 * 113.65577 * 31 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7649 5 6 2.2364 -1.1210 0.7652 6 1 3.1712 -0.8751 1.2687 7 6 1.3587 -2.1561 1.4715 8 1 0.4230 -2.4009 0.9689 9 6 1.3601 -2.1580 3.0023 10 6 2.0650 -3.2783 2.2349 11 1 1.5942 -4.2614 2.2342 12 6 3.5950 -3.2795 2.2334 13 7 4.0832 -4.4837 2.9099 14 6 5.4082 -4.6996 3.0288 15 8 6.1969 -3.8963 2.5760 16 6 5.9061 -5.9251 3.7245 17 8 5.1245 -6.7870 4.0691 18 7 7.2233 -6.0729 3.9689 19 6 8.1585 -4.9658 3.7272 20 6 8.9632 -4.7166 5.0118 21 6 9.6337 -6.0213 5.4480 22 6 10.4545 -5.7740 6.6874 23 1 10.2342 -6.3123 7.5974 24 6 11.4868 -4.8606 6.6595 25 7 11.7549 -4.2048 5.5516 26 14 12.5048 -4.5545 8.1957 27 1 13.6607 -5.4866 8.2173 28 1 12.9983 -3.1540 8.1915 29 1 11.6646 -4.7798 9.3993 30 6 8.5622 -7.0723 5.7474 31 6 7.7521 -7.3463 4.4764 32 1 -0.3634 0.0773 1.0247 33 1 -0.3633 0.8488 -0.5794 34 1 -0.3634 -0.9261 -0.4455 35 1 3.1724 -0.8758 -1.2678 36 1 1.6123 -1.8594 -1.2685 37 1 0.4254 -2.4038 3.5061 38 1 1.9861 -1.4215 3.5061 39 1 3.9596 -2.3956 2.7569 40 1 3.9574 -3.2681 1.2055 41 1 3.4527 -5.1261 3.2716 42 1 8.8349 -5.2299 2.9143 43 1 7.6005 -4.0672 3.4636 44 1 8.2957 -4.3692 5.8004 45 1 9.7259 -3.9616 4.8213 46 1 10.2818 -6.3811 4.6489 47 1 12.4810 -3.5618 5.5321 48 1 7.8985 -6.7027 6.5291 49 1 9.0390 -7.9940 6.0807 50 1 6.9260 -8.0189 4.7075 51 1 8.3942 -7.8018 3.7225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262147459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:32 Heat of formation + Delta-G solvation = -35.936826 kcal Electronic energy + Delta-G solvation = -28725.822223 eV Core-core repulsion = 24819.069157 eV Total energy + Delta-G solvation = -3906.753066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00261 -40.28149 -39.60067 -38.57623 -37.26044 -35.62483 -34.95374 -33.03265 -31.73946 -29.33702 -29.13268 -28.06866 -25.70081 -24.60432 -24.17245 -23.51100 -22.63716 -21.90734 -21.50008 -20.55490 -19.66349 -18.60950 -18.30767 -18.09427 -17.37465 -17.08242 -16.60104 -16.42101 -16.31347 -15.71066 -15.53371 -15.13033 -14.86097 -14.71300 -14.63534 -14.49180 -14.14561 -13.96562 -13.84436 -13.76423 -13.36531 -13.28550 -13.16230 -12.83253 -12.51492 -12.43659 -12.35073 -12.31860 -12.15662 -12.07209 -11.95755 -11.79621 -11.52110 -11.33687 -11.05202 -11.01289 -10.67937 -10.46624 -10.35301 -10.18311 -10.04440 -9.68702 -8.07672 -6.21689 0.30115 1.27914 1.41183 1.42585 1.52056 2.07899 2.40025 2.43778 2.59541 3.17378 3.18662 3.28441 3.47640 3.75650 3.89521 3.96139 4.10237 4.22176 4.27385 4.29504 4.31060 4.34116 4.35585 4.49394 4.50877 4.54854 4.63663 4.69797 4.73916 4.82463 4.93199 4.94440 4.97755 4.99042 5.02138 5.13933 5.17736 5.18730 5.24576 5.25045 5.33386 5.37912 5.38929 5.47472 5.48634 5.62633 5.95664 6.00974 6.10064 6.27352 6.37947 6.67323 6.88325 6.91229 7.46103 8.95916 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002157 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.123304 B =12977.980519 C =13842.904539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.149 4.149 3 H 0.102 0.898 4 C -0.175 4.175 5 C -0.136 4.136 6 H 0.095 0.905 7 C -0.097 4.097 8 H 0.121 0.879 9 C -0.165 4.165 10 C -0.167 4.167 11 H 0.127 0.873 12 C 0.151 3.849 13 N -0.682 5.682 14 C 0.509 3.491 15 O -0.529 6.529 16 C 0.501 3.499 17 O -0.550 6.550 18 N -0.571 5.571 19 C 0.082 3.918 20 C -0.113 4.113 21 C 0.042 3.958 22 C -0.533 4.533 23 H 0.051 0.949 24 C 0.013 3.987 25 N -0.914 5.914 26 Si 0.952 3.048 27 H -0.276 1.276 28 H -0.284 1.284 29 H -0.271 1.271 30 C -0.113 4.113 31 C 0.111 3.889 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.420 0.580 42 H 0.060 0.940 43 H 0.129 0.871 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.004 0.996 47 H 0.261 0.739 48 H 0.044 0.956 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.095 5.091 -11.187 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.167 4.167 3 H 0.120 0.880 4 C -0.212 4.212 5 C -0.154 4.154 6 H 0.113 0.887 7 C -0.116 4.116 8 H 0.139 0.861 9 C -0.202 4.202 10 C -0.185 4.185 11 H 0.144 0.856 12 C 0.029 3.971 13 N -0.335 5.335 14 C 0.290 3.710 15 O -0.407 6.407 16 C 0.284 3.716 17 O -0.430 6.430 18 N -0.303 5.303 19 C -0.039 4.039 20 C -0.151 4.151 21 C 0.024 3.976 22 C -0.572 4.572 23 H 0.069 0.931 24 C -0.185 4.185 25 N -0.553 5.553 26 Si 0.778 3.222 27 H -0.201 1.201 28 H -0.210 1.210 29 H -0.196 1.196 30 C -0.151 4.151 31 C -0.010 4.010 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.258 0.742 42 H 0.078 0.922 43 H 0.146 0.854 44 H 0.043 0.957 45 H 0.095 0.905 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.113 0.887 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.827 5.349 -11.399 26.949 hybrid contribution 1.036 -0.005 1.010 1.447 sum -22.791 5.344 -10.389 25.611 Atomic orbital electron populations 1.21342 0.91889 1.02235 1.02161 1.22449 0.96210 0.94158 1.03928 0.87973 1.23167 1.02784 1.01728 0.93488 1.21861 1.00081 0.99470 0.93969 0.88692 1.21817 0.99565 0.96418 0.93766 0.86109 1.23245 1.02935 1.00136 0.93847 1.22467 0.91991 0.96621 1.07446 0.85550 1.21066 0.92927 0.85852 0.97247 1.45754 1.05453 1.25327 1.56967 1.20066 0.84042 0.86094 0.80803 1.90535 1.54442 1.47170 1.48583 1.20211 0.83011 0.87605 0.80759 1.90681 1.54938 1.44318 1.53033 1.48204 1.06235 1.15239 1.60591 1.22917 0.92339 0.90708 0.97917 1.21876 0.97514 1.01459 0.94274 1.18656 0.92085 0.91746 0.95147 1.21550 1.15049 1.22774 0.97784 0.93068 1.25711 0.98323 0.95765 0.98749 1.69976 1.30685 1.26903 1.27769 0.85653 0.79020 0.77270 0.80268 1.20140 1.20967 1.19606 1.21849 0.97302 1.00069 0.95853 1.21860 0.98376 0.84304 0.96461 0.91873 0.91833 0.92128 0.89026 0.88085 0.86976 0.88981 0.91497 0.90830 0.74189 0.92189 0.85428 0.95683 0.90534 0.97820 0.92975 0.93674 0.90916 0.88695 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.04 71.98 0.65 -0.45 16 2 C -0.15 -1.78 6.41 -10.76 -0.07 -1.85 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.17 -2.21 9.90 30.62 0.30 -1.91 16 5 C -0.14 -1.82 5.10 -10.79 -0.05 -1.87 16 6 H 0.09 1.50 7.35 -2.39 -0.02 1.48 16 7 C -0.10 -1.10 5.18 -10.77 -0.06 -1.16 16 8 H 0.12 1.11 7.19 -2.39 -0.02 1.10 16 9 C -0.16 -1.89 9.90 30.62 0.30 -1.59 16 10 C -0.17 -2.13 5.84 -10.79 -0.06 -2.19 16 11 H 0.13 1.32 8.04 -2.39 -0.02 1.30 16 12 C 0.15 2.81 4.76 86.38 0.41 3.22 16 13 N -0.68 -15.32 5.55 -464.41 -2.58 -17.89 16 14 C 0.51 15.56 7.74 87.27 0.68 16.23 16 15 O -0.53 -18.46 13.18 -3.25 -0.04 -18.51 16 16 C 0.50 17.26 7.73 87.27 0.67 17.93 16 17 O -0.55 -19.48 15.93 -3.25 -0.05 -19.53 16 18 N -0.57 -21.27 2.97 -819.63 -2.43 -23.70 16 19 C 0.08 3.33 6.01 86.51 0.52 3.85 16 20 C -0.11 -5.40 5.17 30.82 0.16 -5.24 16 21 C 0.04 2.10 2.06 -11.51 -0.02 2.07 16 22 C -0.53 -29.30 8.56 25.60 0.22 -29.08 16 23 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 24 C 0.01 0.73 5.30 84.65 0.45 1.18 16 25 N -0.91 -52.32 11.30 21.45 0.24 -52.08 16 26 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 30 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 31 C 0.11 3.97 6.44 86.36 0.56 4.52 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.50 7.40 -2.38 -0.02 0.48 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.14 8.05 -2.39 -0.02 1.12 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.21 8.03 -2.39 -0.02 1.19 16 39 H 0.07 1.37 7.62 -2.38 -0.02 1.35 16 40 H 0.07 1.47 8.03 -2.39 -0.02 1.45 16 41 H 0.42 8.09 7.89 -92.71 -0.73 7.36 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.13 5.12 4.30 -48.63 -0.21 4.91 16 44 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 4.13 6.03 -2.39 -0.01 4.11 16 46 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 48 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 50 H 0.09 3.14 7.01 -2.39 -0.02 3.12 16 51 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -63.29 402.80 1.98 -61.31 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.01 Total: 25.49 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 4.82 Total: -0.79 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.76 Total: -93.67 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.09 Total: -38.04 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -63.29 1.98 -61.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262147459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.373 kcal (2) G-P(sol) polarization free energy of solvation -63.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds