Wall clock time and date at job start Tue Mar 31 2020 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 115.56472 * 2 1 4 4 C 1.53080 * 117.51274 * 214.30074 * 2 1 3 5 5 C 1.53000 * 117.49979 * 145.69022 * 2 1 3 6 6 H 1.09004 * 117.49752 * 215.00074 * 5 2 1 7 7 C 1.53000 * 117.49748 * 0.02562 * 5 2 1 8 8 H 1.08991 * 115.56586 * 34.22312 * 7 5 2 9 9 C 1.53075 * 117.49039 * 248.51078 * 7 5 2 10 10 C 1.53001 * 59.98541 * 252.51592 * 9 7 5 11 11 H 1.08996 * 117.49662 * 107.50748 * 10 9 7 12 12 C 1.53002 * 117.49862 * 252.49911 * 10 9 7 13 13 N 1.46494 * 109.47153 * 243.74781 * 12 10 9 14 14 C 1.34777 * 119.99999 * 179.97438 * 13 12 10 15 15 O 1.21352 * 119.99971 * 0.02562 * 14 13 12 16 16 C 1.49452 * 120.00390 * 180.02562 * 14 13 12 17 17 O 1.21350 * 119.99541 * 353.48229 * 16 14 13 18 18 N 1.34770 * 120.00183 * 173.48883 * 16 14 13 19 19 C 1.46929 * 120.62843 * 173.02096 * 18 16 14 20 20 C 1.53193 * 108.77477 * 233.58070 * 19 18 16 21 21 C 1.53033 * 109.31587 * 305.36797 * 20 19 18 22 22 C 1.50697 * 109.46146 * 181.38382 * 21 20 19 23 23 H 1.07995 * 120.00075 * 0.02562 * 22 21 20 24 24 C 1.37881 * 120.00143 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00018 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00066 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47490 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47646 * 119.99996 * 26 24 22 29 29 H 1.48508 * 109.47036 * 239.99678 * 26 24 22 30 30 C 1.53041 * 109.53857 * 61.36283 * 21 20 19 31 31 C 1.46927 * 120.63148 * 352.99727 * 18 16 14 32 32 H 1.09001 * 109.46793 * 274.30900 * 1 2 3 33 33 H 1.09000 * 109.47081 * 34.30981 * 1 2 3 34 34 H 1.09003 * 109.47292 * 154.31398 * 1 2 3 35 35 H 1.08995 * 117.49479 * 145.03711 * 4 2 1 36 36 H 1.08995 * 117.51284 * 359.97438 * 4 2 1 37 37 H 1.09004 * 117.51074 * 145.03677 * 9 7 5 38 38 H 1.08995 * 117.49866 * 0.02562 * 9 7 5 39 39 H 1.08997 * 109.47021 * 123.74696 * 12 10 9 40 40 H 1.09001 * 109.47045 * 3.74766 * 12 10 9 41 41 H 0.96996 * 119.99970 * 359.97438 * 13 12 10 42 42 H 1.09006 * 109.58402 * 113.79390 * 19 18 16 43 43 H 1.09000 * 109.58801 * 353.37050 * 19 18 16 44 44 H 1.08999 * 109.49450 * 185.41033 * 20 19 18 45 45 H 1.08997 * 109.49285 * 65.31979 * 20 19 18 46 46 H 1.09000 * 109.45919 * 301.34479 * 21 20 19 47 47 H 0.96995 * 120.00396 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.49779 * 58.58623 * 30 21 20 49 49 H 1.09000 * 109.49916 * 178.68715 * 30 21 20 50 50 H 1.09004 * 109.58026 * 246.20094 * 31 18 16 51 51 H 1.08999 * 109.58596 * 6.62800 * 31 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2364 -1.1210 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3588 -2.1565 1.4709 8 1 0.4233 -2.4014 0.9681 9 6 1.3605 -2.1584 3.0016 10 6 2.0653 -3.2787 2.2342 11 1 3.1553 -3.2795 2.2331 12 6 1.4045 -4.6586 2.2332 13 7 2.2794 -5.6195 2.9095 14 6 1.9004 -6.9073 3.0297 15 8 0.8347 -7.2710 2.5774 16 6 2.7926 -7.8875 3.7202 17 8 3.9065 -7.5540 4.0674 18 7 2.3602 -9.1418 3.9570 19 6 3.2734 -10.1594 4.4948 20 6 3.2388 -11.3866 3.5784 21 6 1.7922 -11.8604 3.4213 22 6 1.7580 -13.0879 2.5478 23 1 2.6759 -13.4901 2.1454 24 6 0.5547 -13.6976 2.2622 25 7 -0.5632 -13.2081 2.7526 26 14 0.5124 -15.2195 1.1801 27 1 1.8937 -15.5663 0.7593 28 1 -0.0727 -16.3523 1.9415 29 1 -0.3176 -14.9496 -0.0215 30 6 0.9578 -10.7518 2.7756 31 6 0.9664 -9.5174 3.6828 32 1 -0.3633 0.0772 1.0248 33 1 -0.3633 0.8489 -0.5793 34 1 -0.3634 -0.9261 -0.4454 35 1 3.1723 -0.8756 -1.2680 36 1 1.6124 -1.8596 -1.2680 37 1 0.4259 -2.4045 3.5058 38 1 1.9864 -1.4217 3.5051 39 1 1.2371 -4.9806 1.2054 40 1 0.4502 -4.6048 2.7571 41 1 3.1313 -5.3289 3.2707 42 1 2.9544 -10.4432 5.4978 43 1 4.2865 -9.7588 4.5310 44 1 3.8376 -12.1849 4.0169 45 1 3.6433 -11.1225 2.6014 46 1 1.3803 -12.1008 4.4014 47 1 -1.4096 -13.6371 2.5520 48 1 1.3838 -10.4936 1.8060 49 1 -0.0671 -11.0983 2.6426 50 1 0.4594 -9.7489 4.6196 51 1 0.4574 -8.6931 3.1833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262147462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:45 Heat of formation + Delta-G solvation = -17.230444 kcal Electronic energy + Delta-G solvation = -28506.674334 eV Core-core repulsion = 24600.732437 eV Total energy + Delta-G solvation = -3905.941897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.68022 -39.44477 -38.42368 -37.02639 -36.63409 -34.37434 -33.34338 -31.19500 -30.00977 -28.96201 -28.06325 -26.37230 -24.28244 -23.83060 -22.43104 -22.07838 -21.70707 -21.32771 -20.20153 -19.58334 -18.81837 -17.37052 -16.81064 -16.34245 -16.16511 -16.02917 -15.53913 -15.26545 -14.67767 -14.50665 -14.40624 -14.04223 -13.85636 -13.50016 -13.35433 -13.09931 -12.92093 -12.84613 -12.82489 -12.67468 -12.22055 -11.89293 -11.84960 -11.70959 -11.56316 -11.38937 -11.32040 -10.94978 -10.86204 -10.76705 -10.53940 -10.33000 -10.13160 -10.04551 -9.78785 -9.65733 -9.26397 -9.19893 -9.15169 -8.49548 -8.29412 -8.06384 -5.98410 -4.04738 1.62971 2.48755 3.05897 3.29936 3.38207 3.41971 3.43735 3.68330 3.77188 4.04321 4.33517 4.34862 4.44204 4.52084 4.62909 4.75072 4.79550 4.86248 4.93177 4.95542 5.30650 5.31450 5.40208 5.42911 5.44924 5.46242 5.46927 5.65056 5.66051 5.73562 5.76201 5.86163 5.88735 5.91767 5.94851 6.08244 6.13648 6.27422 6.48399 6.64413 6.76007 6.82656 7.00747 7.14708 7.20807 7.35617 7.69596 7.81948 7.93481 7.99665 8.11697 8.27169 8.44973 8.98708 9.59946 11.07034 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.002044 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.761806 B =13695.119592 C =14566.214117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.150 4.150 3 H 0.102 0.898 4 C -0.173 4.173 5 C -0.122 4.122 6 H 0.104 0.896 7 C -0.107 4.107 8 H 0.110 0.890 9 C -0.167 4.167 10 C -0.163 4.163 11 H 0.113 0.887 12 C 0.149 3.851 13 N -0.701 5.701 14 C 0.510 3.490 15 O -0.500 6.500 16 C 0.500 3.500 17 O -0.546 6.546 18 N -0.560 5.560 19 C 0.107 3.893 20 C -0.123 4.123 21 C 0.045 3.955 22 C -0.512 4.512 23 H 0.055 0.945 24 C 0.060 3.940 25 N -0.890 5.890 26 Si 0.890 3.110 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.284 1.284 30 C -0.117 4.117 31 C 0.044 3.956 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.412 0.588 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.027 0.973 47 H 0.260 0.740 48 H 0.037 0.963 49 H 0.104 0.896 50 H 0.056 0.944 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 25.868 -1.367 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.168 4.168 3 H 0.120 0.880 4 C -0.210 4.210 5 C -0.140 4.140 6 H 0.122 0.878 7 C -0.126 4.126 8 H 0.128 0.872 9 C -0.204 4.204 10 C -0.181 4.181 11 H 0.131 0.869 12 C 0.026 3.974 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.376 6.376 16 C 0.282 3.718 17 O -0.426 6.426 18 N -0.291 5.291 19 C -0.015 4.015 20 C -0.161 4.161 21 C 0.026 3.974 22 C -0.550 4.550 23 H 0.073 0.927 24 C -0.141 4.141 25 N -0.529 5.529 26 Si 0.719 3.281 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.211 1.211 30 C -0.155 4.155 31 C -0.076 4.076 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.248 0.752 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.122 0.878 50 H 0.075 0.925 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.799 25.709 -1.508 25.905 hybrid contribution 0.369 -0.853 -0.431 1.025 sum 3.168 24.855 -1.939 25.131 Atomic orbital electron populations 1.21351 0.92726 1.01893 1.01985 1.22373 0.95615 0.94240 1.04611 0.87953 1.23139 1.02648 1.01448 0.93797 1.21815 0.99887 0.98621 0.93653 0.87837 1.21801 0.99867 0.97201 0.93739 0.87240 1.23191 1.02629 1.00840 0.93700 1.22529 0.99676 0.89766 1.06164 0.86894 1.20980 0.92908 0.85458 0.98100 1.45761 1.23612 1.07863 1.58288 1.20437 0.86556 0.83261 0.80572 1.90410 1.23344 1.76265 1.47627 1.19831 0.87043 0.83719 0.81218 1.90690 1.20997 1.78072 1.52851 1.48237 1.13543 1.08198 1.59113 1.21892 0.93401 0.88691 0.97470 1.22018 1.01471 0.94569 0.98017 1.18702 0.88720 0.93230 0.96747 1.21227 0.92875 1.10427 1.30448 0.92692 1.24971 0.95770 0.97303 0.96012 1.69857 0.97806 1.40162 1.45054 0.86564 0.78014 0.83147 0.80420 1.19877 1.21091 1.21064 1.21920 1.05088 0.92302 0.96187 1.23483 0.79291 1.03610 1.01172 0.91982 0.92355 0.92419 0.88815 0.88531 0.88287 0.88470 0.90496 0.90721 0.75173 0.91543 0.90210 0.91871 0.92903 0.95493 0.93044 0.94449 0.87792 0.92537 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.04 37.16 0.34 -0.35 16 2 C -0.15 -0.90 6.41 -90.58 -0.58 -1.48 16 3 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.17 -1.10 9.90 -26.69 -0.26 -1.36 16 5 C -0.12 -0.78 5.85 -90.62 -0.53 -1.31 16 6 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 7 C -0.11 -0.71 4.90 -90.58 -0.44 -1.16 16 8 H 0.11 0.74 7.19 -51.93 -0.37 0.37 16 9 C -0.17 -1.07 9.90 -26.69 -0.26 -1.33 16 10 C -0.16 -1.19 5.57 -90.62 -0.50 -1.69 16 11 H 0.11 0.79 8.04 -51.93 -0.42 0.37 16 12 C 0.15 1.43 5.96 -4.04 -0.02 1.40 16 13 N -0.70 -8.26 5.55 -60.73 -0.34 -8.60 16 14 C 0.51 8.02 7.78 -11.58 -0.09 7.93 16 15 O -0.50 -8.91 13.10 5.50 0.07 -8.84 16 16 C 0.50 8.89 7.74 -11.59 -0.09 8.80 16 17 O -0.55 -10.11 15.94 5.50 0.09 -10.02 16 18 N -0.56 -10.64 2.97 -173.27 -0.51 -11.16 16 19 C 0.11 1.98 6.41 -3.71 -0.02 1.96 16 20 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 21 C 0.04 1.09 2.06 -91.73 -0.19 0.90 16 22 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 23 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 24 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 25 N -0.89 -25.11 11.30 55.43 0.63 -24.48 16 26 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 27 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 C -0.12 -2.76 5.15 -26.61 -0.14 -2.90 16 31 C 0.04 0.89 6.27 -3.71 -0.02 0.87 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.33 7.40 -51.93 -0.38 -0.05 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.63 8.05 -51.93 -0.42 0.22 16 37 H 0.10 0.62 8.03 -51.93 -0.42 0.21 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 41 H 0.41 4.32 7.89 -40.82 -0.32 4.00 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.40 7.05 -51.93 -0.37 1.04 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.10 2.74 6.03 -51.93 -0.31 2.42 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.14 2.76 3.78 -56.76 -0.21 2.55 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -29.96 405.07 -11.01 -40.97 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -8.67 Total: 4.84 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.36 Total: -5.08 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.23 Total: -44.24 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.16 Total: -18.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.96 -11.01 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262147462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.740 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds