Wall clock time and date at job start Tue Mar 31 2020 17:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 115.56472 * 2 1 4 4 C 1.53080 * 117.51274 * 214.30074 * 2 1 3 5 5 C 1.53000 * 117.49979 * 145.69022 * 2 1 3 6 6 H 1.09004 * 117.49752 * 215.00074 * 5 2 1 7 7 C 1.53000 * 117.49748 * 0.02562 * 5 2 1 8 8 H 1.08991 * 115.56586 * 34.22312 * 7 5 2 9 9 C 1.53075 * 117.49039 * 248.51078 * 7 5 2 10 10 C 1.53001 * 59.98541 * 252.51592 * 9 7 5 11 11 H 1.08996 * 117.49662 * 107.50748 * 10 9 7 12 12 C 1.53002 * 117.49862 * 252.49911 * 10 9 7 13 13 N 1.46494 * 109.47153 * 243.74781 * 12 10 9 14 14 C 1.34777 * 119.99999 * 179.97438 * 13 12 10 15 15 O 1.21352 * 119.99971 * 0.02562 * 14 13 12 16 16 C 1.49452 * 120.00390 * 180.02562 * 14 13 12 17 17 O 1.21350 * 119.99541 * 353.48229 * 16 14 13 18 18 N 1.34770 * 120.00183 * 173.48883 * 16 14 13 19 19 C 1.46929 * 120.62843 * 173.02096 * 18 16 14 20 20 C 1.53193 * 108.77477 * 233.58070 * 19 18 16 21 21 C 1.53033 * 109.31587 * 305.36797 * 20 19 18 22 22 C 1.50697 * 109.46146 * 181.38382 * 21 20 19 23 23 H 1.07995 * 120.00075 * 0.02562 * 22 21 20 24 24 C 1.37881 * 120.00143 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00018 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00066 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47490 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47646 * 119.99996 * 26 24 22 29 29 H 1.48508 * 109.47036 * 239.99678 * 26 24 22 30 30 C 1.53041 * 109.53857 * 61.36283 * 21 20 19 31 31 C 1.46927 * 120.63148 * 352.99727 * 18 16 14 32 32 H 1.09001 * 109.46793 * 274.30900 * 1 2 3 33 33 H 1.09000 * 109.47081 * 34.30981 * 1 2 3 34 34 H 1.09003 * 109.47292 * 154.31398 * 1 2 3 35 35 H 1.08995 * 117.49479 * 145.03711 * 4 2 1 36 36 H 1.08995 * 117.51284 * 359.97438 * 4 2 1 37 37 H 1.09004 * 117.51074 * 145.03677 * 9 7 5 38 38 H 1.08995 * 117.49866 * 0.02562 * 9 7 5 39 39 H 1.08997 * 109.47021 * 123.74696 * 12 10 9 40 40 H 1.09001 * 109.47045 * 3.74766 * 12 10 9 41 41 H 0.96996 * 119.99970 * 359.97438 * 13 12 10 42 42 H 1.09006 * 109.58402 * 113.79390 * 19 18 16 43 43 H 1.09000 * 109.58801 * 353.37050 * 19 18 16 44 44 H 1.08999 * 109.49450 * 185.41033 * 20 19 18 45 45 H 1.08997 * 109.49285 * 65.31979 * 20 19 18 46 46 H 1.09000 * 109.45919 * 301.34479 * 21 20 19 47 47 H 0.96995 * 120.00396 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.49779 * 58.58623 * 30 21 20 49 49 H 1.09000 * 109.49916 * 178.68715 * 30 21 20 50 50 H 1.09004 * 109.58026 * 246.20094 * 31 18 16 51 51 H 1.08999 * 109.58596 * 6.62800 * 31 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2364 -1.1210 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3588 -2.1565 1.4709 8 1 0.4233 -2.4014 0.9681 9 6 1.3605 -2.1584 3.0016 10 6 2.0653 -3.2787 2.2342 11 1 3.1553 -3.2795 2.2331 12 6 1.4045 -4.6586 2.2332 13 7 2.2794 -5.6195 2.9095 14 6 1.9004 -6.9073 3.0297 15 8 0.8347 -7.2710 2.5774 16 6 2.7926 -7.8875 3.7202 17 8 3.9065 -7.5540 4.0674 18 7 2.3602 -9.1418 3.9570 19 6 3.2734 -10.1594 4.4948 20 6 3.2388 -11.3866 3.5784 21 6 1.7922 -11.8604 3.4213 22 6 1.7580 -13.0879 2.5478 23 1 2.6759 -13.4901 2.1454 24 6 0.5547 -13.6976 2.2622 25 7 -0.5632 -13.2081 2.7526 26 14 0.5124 -15.2195 1.1801 27 1 1.8937 -15.5663 0.7593 28 1 -0.0727 -16.3523 1.9415 29 1 -0.3176 -14.9496 -0.0215 30 6 0.9578 -10.7518 2.7756 31 6 0.9664 -9.5174 3.6828 32 1 -0.3633 0.0772 1.0248 33 1 -0.3633 0.8489 -0.5793 34 1 -0.3634 -0.9261 -0.4454 35 1 3.1723 -0.8756 -1.2680 36 1 1.6124 -1.8596 -1.2680 37 1 0.4259 -2.4045 3.5058 38 1 1.9864 -1.4217 3.5051 39 1 1.2371 -4.9806 1.2054 40 1 0.4502 -4.6048 2.7571 41 1 3.1313 -5.3289 3.2707 42 1 2.9544 -10.4432 5.4978 43 1 4.2865 -9.7588 4.5310 44 1 3.8376 -12.1849 4.0169 45 1 3.6433 -11.1225 2.6014 46 1 1.3803 -12.1008 4.4014 47 1 -1.4096 -13.6371 2.5520 48 1 1.3838 -10.4936 1.8060 49 1 -0.0671 -11.0983 2.6426 50 1 0.4594 -9.7489 4.6196 51 1 0.4574 -8.6931 3.1833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262147462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:44 Heat of formation + Delta-G solvation = -33.099232 kcal Electronic energy + Delta-G solvation = -28507.362456 eV Core-core repulsion = 24600.732437 eV Total energy + Delta-G solvation = -3906.630019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02370 -40.18747 -39.59788 -38.60172 -37.36188 -35.62010 -34.95355 -33.02470 -31.73505 -29.48565 -29.04546 -28.07382 -25.75769 -24.43133 -24.14684 -23.51626 -22.31352 -22.11015 -21.50604 -20.39974 -20.10072 -18.77028 -18.37390 -18.04838 -17.19765 -16.89588 -16.64837 -16.48334 -16.30086 -15.86630 -15.53712 -15.09736 -14.79724 -14.68378 -14.64347 -14.51123 -14.30626 -13.92333 -13.87283 -13.55420 -13.36531 -13.28546 -13.20481 -12.83913 -12.53113 -12.45940 -12.35393 -12.30410 -12.14147 -12.06891 -11.92304 -11.81649 -11.50550 -11.35924 -11.06187 -11.01390 -10.66790 -10.46659 -10.36641 -10.16150 -9.94796 -9.69034 -8.07593 -6.21440 0.29130 1.27776 1.39904 1.42370 1.52976 2.08363 2.38980 2.43753 2.61947 3.17226 3.18694 3.26036 3.46798 3.80238 3.85520 4.04420 4.11563 4.19174 4.24350 4.27417 4.32732 4.36020 4.37654 4.49538 4.50314 4.55223 4.63239 4.68628 4.77881 4.81167 4.93559 4.94085 4.96321 4.99383 5.00634 5.13641 5.19316 5.20801 5.23608 5.25505 5.36756 5.39357 5.40405 5.47725 5.53451 5.63216 5.96283 6.01476 6.11279 6.28647 6.38618 6.68995 6.88757 6.92028 7.46192 8.96233 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.002044 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.761806 B =13695.119592 C =14566.214117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.149 4.149 3 H 0.110 0.890 4 C -0.180 4.180 5 C -0.125 4.125 6 H 0.108 0.892 7 C -0.105 4.105 8 H 0.107 0.893 9 C -0.159 4.159 10 C -0.165 4.165 11 H 0.120 0.880 12 C 0.148 3.852 13 N -0.679 5.679 14 C 0.510 3.490 15 O -0.525 6.525 16 C 0.501 3.499 17 O -0.550 6.550 18 N -0.569 5.569 19 C 0.112 3.888 20 C -0.114 4.114 21 C 0.041 3.959 22 C -0.533 4.533 23 H 0.050 0.950 24 C 0.013 3.987 25 N -0.914 5.914 26 Si 0.952 3.048 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.282 1.282 30 C -0.106 4.106 31 C 0.059 3.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.421 0.579 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.004 0.996 47 H 0.261 0.739 48 H 0.021 0.979 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 27.411 -1.317 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 H 0.128 0.872 4 C -0.217 4.217 5 C -0.143 4.143 6 H 0.126 0.874 7 C -0.124 4.124 8 H 0.125 0.875 9 C -0.196 4.196 10 C -0.183 4.183 11 H 0.138 0.862 12 C 0.026 3.974 13 N -0.332 5.332 14 C 0.292 3.708 15 O -0.404 6.404 16 C 0.284 3.716 17 O -0.430 6.430 18 N -0.301 5.301 19 C -0.010 4.010 20 C -0.152 4.152 21 C 0.023 3.977 22 C -0.571 4.571 23 H 0.069 0.931 24 C -0.186 4.186 25 N -0.553 5.553 26 Si 0.778 3.222 27 H -0.194 1.194 28 H -0.206 1.206 29 H -0.208 1.208 30 C -0.145 4.145 31 C -0.061 4.061 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.259 0.741 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.685 27.297 -1.451 27.583 hybrid contribution 0.132 -1.261 -0.462 1.350 sum 3.817 26.036 -1.913 26.384 Atomic orbital electron populations 1.21361 0.92566 1.01960 1.02119 1.22449 0.95796 0.94413 1.04022 0.87233 1.23177 1.02938 1.01692 0.93903 1.21850 1.00115 0.98743 0.93577 0.87353 1.21806 0.99663 0.96772 0.94117 0.87508 1.23253 1.02634 1.00181 0.93506 1.22427 0.99908 0.88571 1.07432 0.86216 1.21114 0.92846 0.86040 0.97408 1.45729 1.23959 1.06705 1.56829 1.20102 0.85993 0.84100 0.80641 1.90379 1.24209 1.76730 1.49068 1.20155 0.87188 0.83594 0.80651 1.90682 1.21265 1.78161 1.52894 1.48215 1.13013 1.08987 1.59840 1.21850 0.94185 0.87645 0.97280 1.21864 0.98879 0.96070 0.98358 1.18673 0.91150 0.92928 0.94976 1.21582 0.92853 1.11664 1.31021 0.93124 1.25716 0.95528 1.00075 0.97281 1.69983 0.98176 1.41232 1.45927 0.85597 0.78076 0.79801 0.78703 1.19385 1.20550 1.20803 1.21682 1.02907 0.93705 0.96193 1.23244 0.80354 1.02120 1.00412 0.91882 0.91762 0.92841 0.88343 0.89081 0.88082 0.87491 0.91108 0.90572 0.74131 0.90349 0.88774 0.90891 0.93765 0.97831 0.92986 0.96030 0.90719 0.92412 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.04 71.98 0.65 -0.56 16 2 C -0.15 -1.54 6.41 -10.77 -0.07 -1.61 16 3 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 4 C -0.18 -2.06 9.90 30.62 0.30 -1.76 16 5 C -0.12 -1.38 5.85 -10.79 -0.06 -1.44 16 6 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 7 C -0.10 -1.22 4.90 -10.77 -0.05 -1.27 16 8 H 0.11 1.31 7.19 -2.39 -0.02 1.30 16 9 C -0.16 -1.69 9.90 30.62 0.30 -1.38 16 10 C -0.16 -2.08 5.57 -10.79 -0.06 -2.14 16 11 H 0.12 1.39 8.04 -2.39 -0.02 1.37 16 12 C 0.15 2.63 5.96 86.38 0.51 3.14 16 13 N -0.68 -14.86 5.55 -464.42 -2.58 -17.43 16 14 C 0.51 15.46 7.78 87.27 0.68 16.14 16 15 O -0.53 -18.42 13.10 -3.25 -0.04 -18.46 16 16 C 0.50 17.15 7.74 87.27 0.68 17.82 16 17 O -0.55 -19.27 15.94 -3.25 -0.05 -19.32 16 18 N -0.57 -21.19 2.97 -820.47 -2.44 -23.63 16 19 C 0.11 4.00 6.41 86.36 0.55 4.56 16 20 C -0.11 -4.70 5.30 30.67 0.16 -4.54 16 21 C 0.04 2.07 2.06 -11.52 -0.02 2.04 16 22 C -0.53 -29.53 8.56 25.60 0.22 -29.31 16 23 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 24 C 0.01 0.71 5.30 84.66 0.45 1.15 16 25 N -0.91 -52.57 11.30 21.45 0.24 -52.33 16 26 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 30 C -0.11 -5.16 5.15 30.67 0.16 -5.01 16 31 C 0.06 2.40 6.27 86.36 0.54 2.94 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.57 7.40 -2.39 -0.02 0.55 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.13 8.05 -2.39 -0.02 1.11 16 37 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.38 7.88 -2.39 -0.02 1.36 16 41 H 0.42 7.88 7.89 -92.71 -0.73 7.15 16 42 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 43 H 0.09 3.12 7.05 -2.39 -0.02 3.11 16 44 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.07 4.08 6.03 -2.39 -0.01 4.06 16 50 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.15 5.83 3.78 -78.84 -0.30 5.53 16 Total: -1.00 -63.80 405.07 2.00 -61.79 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.10 Total: 24.60 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.94 Total: -1.22 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -4.77 Total: -93.39 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.09 Total: -37.79 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.80 2.00 -61.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262147462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.695 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds