Wall clock time and date at job start Tue Mar 31 2020 18:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46654 * 2 1 4 4 C 1.53003 * 109.47081 * 119.99351 * 2 1 3 5 5 C 1.50700 * 109.47313 * 295.00467 * 4 2 1 6 6 C 1.34519 * 125.78680 * 89.71359 * 5 4 2 7 7 C 1.41382 * 106.83688 * 179.89045 * 6 5 4 8 8 C 1.34518 * 106.84305 * 0.37284 * 7 6 5 9 9 O 1.34300 * 108.41935 * 359.77165 * 8 7 6 10 10 C 1.50692 * 109.47591 * 239.99629 * 2 1 3 11 11 O 1.21279 * 120.00243 * 251.39040 * 10 2 1 12 12 N 1.34782 * 119.99647 * 71.38786 * 10 2 1 13 13 C 1.46921 * 120.63433 * 5.11514 * 12 10 2 14 14 C 1.53188 * 108.77566 * 126.41213 * 13 12 10 15 15 C 1.53040 * 109.31461 * 54.63944 * 14 13 12 16 16 H 1.08990 * 109.46464 * 58.63830 * 15 14 13 17 17 C 1.52995 * 109.46078 * 178.61644 * 15 14 13 18 18 C 1.53082 * 109.65597 * 298.69656 * 15 14 13 19 19 C 1.46934 * 120.62485 * 185.13490 * 12 10 2 20 20 H 1.09003 * 109.58476 * 113.66275 * 19 12 10 21 21 C 1.52995 * 109.59093 * 353.37565 * 19 12 10 22 22 N 1.46503 * 109.46840 * 68.06878 * 21 19 12 23 23 C 1.36939 * 119.99671 * 174.21372 * 22 21 19 24 24 H 1.08000 * 120.00222 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99894 * 179.72540 * 23 22 21 26 26 N 1.31614 * 120.00102 * 0.27694 * 25 23 22 27 27 Si 1.86806 * 119.99872 * 180.27550 * 25 23 22 28 28 H 1.48493 * 109.47110 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46793 * 120.00020 * 27 25 23 30 30 H 1.48503 * 109.46764 * 239.99959 * 27 25 23 31 31 H 1.08993 * 109.47352 * 305.64239 * 1 2 3 32 32 H 1.09000 * 109.46568 * 65.64548 * 1 2 3 33 33 H 1.09007 * 109.46503 * 185.63899 * 1 2 3 34 34 H 1.09002 * 109.46944 * 55.00321 * 4 2 1 35 35 H 1.09002 * 109.47314 * 175.00287 * 4 2 1 36 36 H 1.07998 * 126.58560 * 0.02739 * 6 5 4 37 37 H 1.08003 * 126.58215 * 180.16323 * 7 6 5 38 38 H 1.07995 * 125.79032 * 179.78989 * 8 7 6 39 39 H 1.09002 * 109.58348 * 246.20112 * 13 12 10 40 40 H 1.08994 * 109.58542 * 6.62532 * 13 12 10 41 41 H 1.09003 * 109.49755 * 174.58591 * 14 13 12 42 42 H 1.09001 * 109.49797 * 294.68031 * 14 13 12 43 43 H 1.08999 * 109.47517 * 59.99594 * 17 15 14 44 44 H 1.09003 * 109.47127 * 179.97438 * 17 15 14 45 45 H 1.09005 * 109.47166 * 299.99637 * 17 15 14 46 46 H 1.08997 * 109.38724 * 301.28141 * 18 15 14 47 47 H 1.08998 * 109.62143 * 181.16967 * 18 15 14 48 48 H 1.08998 * 109.46866 * 308.06991 * 21 19 12 49 49 H 1.09000 * 109.47177 * 188.06745 * 21 19 12 50 50 H 0.97000 * 120.00130 * 354.21902 * 22 21 19 51 51 H 0.96997 * 120.00276 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.4983 -0.0970 3.1690 7 6 0.5390 0.8277 4.2377 8 6 1.7005 1.4974 4.1297 9 8 2.3641 1.0265 3.0612 10 6 2.0325 -0.7104 -1.2303 11 8 2.5506 -1.8024 -1.1309 12 7 1.9059 -0.1322 -2.4412 13 6 1.3833 1.2351 -2.5670 14 6 2.3797 2.0713 -3.3760 15 6 2.6545 1.3782 -4.7125 16 1 1.7190 1.2595 -5.2591 17 6 3.6228 2.2279 -5.5378 18 6 3.2726 0.0006 -4.4606 19 6 2.2876 -0.8577 -3.6606 20 1 1.4001 -1.0524 -4.2628 21 6 2.9517 -2.1830 -3.2824 22 7 1.9574 -3.0720 -2.6764 23 6 2.2927 -4.3625 -2.3644 24 1 3.2902 -4.7248 -2.5646 25 6 1.3523 -5.2032 -1.7849 26 7 0.1368 -4.7616 -1.5405 27 14 1.8119 -6.9613 -1.3522 28 1 3.2276 -7.2091 -1.7256 29 1 1.6403 -7.1728 0.1076 30 1 0.9330 -7.8999 -2.0951 31 1 -0.3634 0.5988 0.8351 32 1 -0.3632 0.4238 -0.9362 33 1 -0.3632 -1.0228 0.1010 34 1 1.6054 -1.7197 1.2953 35 1 3.1264 -0.7993 1.2058 36 1 -0.2967 -0.7950 2.9517 37 1 -0.2189 0.9714 4.9937 38 1 2.0418 2.2807 4.7903 39 1 0.4224 1.2132 -3.0811 40 1 1.2599 1.6717 -1.5759 41 1 1.9603 3.0607 -3.5588 42 1 3.3111 2.1680 -2.8180 43 1 4.5583 2.3471 -4.9911 44 1 3.8190 1.7341 -6.4896 45 1 3.1814 3.2076 -5.7206 46 1 4.1968 0.1167 -3.8945 47 1 3.4872 -0.4840 -5.4130 48 1 3.7548 -1.9965 -2.5695 49 1 3.3616 -2.6523 -4.1768 50 1 1.0616 -2.7466 -2.4963 51 1 -0.5203 -5.3489 -1.1352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264004095.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:52 Heat of formation + Delta-G solvation = 18.332980 kcal Electronic energy + Delta-G solvation = -30876.071309 eV Core-core repulsion = 26971.671559 eV Total energy + Delta-G solvation = -3904.399751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.47854 -40.25540 -37.50554 -35.42126 -33.93672 -33.55277 -32.74244 -31.87908 -29.78833 -29.70900 -28.09217 -26.40230 -25.39342 -23.68908 -23.07665 -22.52656 -21.61204 -21.01578 -20.10537 -19.87726 -18.46463 -17.32858 -16.89551 -16.28767 -15.90949 -15.46252 -15.05203 -14.71635 -14.52274 -14.43475 -14.05221 -13.89420 -13.49955 -13.40316 -13.00413 -12.89692 -12.76176 -12.71567 -12.60220 -12.32149 -12.15623 -11.97268 -11.80965 -11.71299 -11.56015 -11.35237 -11.05036 -10.98882 -10.82327 -10.76812 -10.68202 -10.64458 -10.35165 -10.18864 -9.81568 -9.78066 -9.46978 -8.67774 -8.37924 -8.15168 -7.98436 -6.44965 -5.52610 -2.71496 1.82089 2.70790 3.07778 3.42539 3.52316 3.57543 3.61801 3.63602 4.68529 4.71809 4.74297 4.85587 4.86996 5.01013 5.09141 5.12703 5.19491 5.22408 5.33716 5.35755 5.47077 5.55350 5.60015 5.62176 5.73107 5.78619 5.83220 5.84448 5.85827 5.89357 5.95849 5.99955 6.02761 6.08981 6.12975 6.13951 6.15093 6.18223 6.24426 6.41211 6.44112 6.53169 6.59489 6.62387 6.73246 7.00706 7.26201 7.34336 7.90887 8.05719 8.65797 9.04894 9.77540 10.37836 10.72521 11.71492 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006697 B = 0.005613 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4179.848264 B = 4987.087235 C = 8519.846391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.023 4.023 5 C 0.006 3.994 6 C -0.212 4.212 7 C -0.212 4.212 8 C -0.056 4.056 9 O -0.179 6.179 10 C 0.477 3.523 11 O -0.441 6.441 12 N -0.615 5.615 13 C 0.110 3.890 14 C -0.129 4.129 15 C -0.091 4.091 16 H 0.070 0.930 17 C -0.145 4.145 18 C -0.121 4.121 19 C 0.143 3.857 20 H 0.066 0.934 21 C 0.162 3.838 22 N -0.694 5.694 23 C -0.204 4.204 24 H 0.064 0.936 25 C -0.021 4.021 26 N -0.938 5.938 27 Si 0.898 3.102 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.198 0.802 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.039 0.961 49 H 0.013 0.987 50 H 0.380 0.620 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 19.995 1.890 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.061 4.061 5 C -0.044 4.044 6 C -0.231 4.231 7 C -0.231 4.231 8 C -0.124 4.124 9 O -0.075 6.075 10 C 0.261 3.739 11 O -0.308 6.308 12 N -0.353 5.353 13 C -0.013 4.013 14 C -0.167 4.167 15 C -0.110 4.110 16 H 0.088 0.912 17 C -0.202 4.202 18 C -0.160 4.160 19 C 0.039 3.961 20 H 0.084 0.916 21 C 0.035 3.965 22 N -0.337 5.337 23 C -0.337 4.337 24 H 0.082 0.918 25 C -0.215 4.215 26 N -0.590 5.590 27 Si 0.731 3.269 28 H -0.209 1.209 29 H -0.223 1.223 30 H -0.224 1.224 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.214 0.786 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.031 0.969 50 H 0.213 0.787 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.723 19.273 1.883 19.556 hybrid contribution -0.481 -0.707 0.610 1.050 sum 2.242 18.566 2.493 18.866 Atomic orbital electron populations 1.21852 0.92929 1.03674 1.01810 1.21191 0.97852 0.99679 0.93200 0.89938 1.20021 1.02803 0.97463 0.85772 1.22639 0.91867 0.92150 0.97781 1.21648 0.99686 1.04008 0.97794 1.21819 0.99455 1.00056 1.01769 1.23918 0.93965 1.02801 0.91676 1.84019 1.44604 1.43229 1.35637 1.20267 0.83172 0.86531 0.83886 1.91152 1.38453 1.16938 1.84260 1.47804 1.66894 1.14649 1.05933 1.21642 0.96336 0.82689 1.00661 1.21986 1.00029 0.98363 0.96325 1.21107 0.99073 0.95109 0.95715 0.91204 1.21816 0.99299 0.99344 0.99759 1.21973 0.98951 0.94774 1.00267 1.21455 0.97040 0.92450 0.85132 0.91617 1.20859 0.93758 0.87128 0.94780 1.42261 1.10480 1.09053 1.71916 1.19199 0.96085 0.87361 1.31012 0.91775 1.24562 0.96179 0.97863 1.02923 1.69656 1.03532 1.35010 1.50761 0.86206 0.77150 0.85833 0.77676 1.20900 1.22305 1.22407 0.92144 0.92279 0.91008 0.87195 0.89789 0.83406 0.83806 0.78560 0.92080 0.90037 0.91330 0.91655 0.92833 0.92719 0.92973 0.91626 0.91035 0.94383 0.96901 0.78653 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.43 37.16 0.31 -1.73 16 2 C -0.10 -1.45 1.86 -91.77 -0.17 -1.62 16 3 H 0.08 1.07 6.82 -51.93 -0.35 0.72 16 4 C -0.02 -0.37 4.53 -27.88 -0.13 -0.49 16 5 C 0.01 0.08 6.07 -35.62 -0.22 -0.13 16 6 C -0.21 -2.90 9.54 -39.70 -0.38 -3.28 16 7 C -0.21 -2.47 10.91 -39.70 -0.43 -2.90 16 8 C -0.06 -0.62 12.09 29.42 0.36 -0.27 16 9 O -0.18 -2.48 10.65 5.71 0.06 -2.42 16 10 C 0.48 8.63 6.27 -10.99 -0.07 8.56 16 11 O -0.44 -10.14 9.74 5.56 0.05 -10.08 16 12 N -0.61 -9.56 2.97 -165.23 -0.49 -10.06 16 13 C 0.11 1.27 5.13 -3.72 -0.02 1.26 16 14 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 15 C -0.09 -0.95 2.68 -90.56 -0.24 -1.19 16 16 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 18 C -0.12 -1.56 4.66 -26.59 -0.12 -1.69 16 19 C 0.14 2.37 2.94 -67.60 -0.20 2.17 16 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 21 C 0.16 3.48 4.87 -4.04 -0.02 3.46 16 22 N -0.69 -18.26 3.17 -59.91 -0.19 -18.45 16 23 C -0.20 -6.00 9.71 -15.06 -0.15 -6.15 16 24 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 26 N -0.94 -29.23 13.06 55.49 0.72 -28.51 16 27 Si 0.90 23.64 29.55 -169.99 -5.02 18.62 16 28 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 30 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 31 H 0.06 0.76 6.75 -51.93 -0.35 0.41 16 32 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.11 2.01 8.11 -51.93 -0.42 1.58 16 35 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 36 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.85 5.21 -51.93 -0.27 0.58 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.04 0.89 6.44 -51.93 -0.33 0.55 16 49 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.38 10.58 6.90 -40.82 -0.28 10.30 16 51 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -33.89 393.14 -8.98 -42.87 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.66 Total: 9.16 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.37 Total: -7.07 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.04 Total: -57.01 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.12 Total: -12.50 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.02 Total: 18.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.89 -8.98 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264004095.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.204 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds