Wall clock time and date at job start Tue Mar 31 2020 18:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46654 * 2 1 4 4 C 1.53003 * 109.47081 * 119.99351 * 2 1 3 5 5 C 1.50700 * 109.47313 * 295.00467 * 4 2 1 6 6 C 1.34519 * 125.78680 * 89.71359 * 5 4 2 7 7 C 1.41382 * 106.83688 * 179.89045 * 6 5 4 8 8 C 1.34518 * 106.84305 * 0.37284 * 7 6 5 9 9 O 1.34300 * 108.41935 * 359.77165 * 8 7 6 10 10 C 1.50692 * 109.47591 * 239.99629 * 2 1 3 11 11 O 1.21279 * 120.00243 * 251.39040 * 10 2 1 12 12 N 1.34782 * 119.99647 * 71.38786 * 10 2 1 13 13 C 1.46921 * 120.63433 * 5.11514 * 12 10 2 14 14 C 1.53188 * 108.77566 * 126.41213 * 13 12 10 15 15 C 1.53040 * 109.31461 * 54.63944 * 14 13 12 16 16 H 1.08990 * 109.46464 * 58.63830 * 15 14 13 17 17 C 1.52995 * 109.46078 * 178.61644 * 15 14 13 18 18 C 1.53082 * 109.65597 * 298.69656 * 15 14 13 19 19 C 1.46934 * 120.62485 * 185.13490 * 12 10 2 20 20 H 1.09003 * 109.58476 * 113.66275 * 19 12 10 21 21 C 1.52995 * 109.59093 * 353.37565 * 19 12 10 22 22 N 1.46503 * 109.46840 * 68.06878 * 21 19 12 23 23 C 1.36939 * 119.99671 * 174.21372 * 22 21 19 24 24 H 1.08000 * 120.00222 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99894 * 179.72540 * 23 22 21 26 26 N 1.31614 * 120.00102 * 0.27694 * 25 23 22 27 27 Si 1.86806 * 119.99872 * 180.27550 * 25 23 22 28 28 H 1.48493 * 109.47110 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46793 * 120.00020 * 27 25 23 30 30 H 1.48503 * 109.46764 * 239.99959 * 27 25 23 31 31 H 1.08993 * 109.47352 * 305.64239 * 1 2 3 32 32 H 1.09000 * 109.46568 * 65.64548 * 1 2 3 33 33 H 1.09007 * 109.46503 * 185.63899 * 1 2 3 34 34 H 1.09002 * 109.46944 * 55.00321 * 4 2 1 35 35 H 1.09002 * 109.47314 * 175.00287 * 4 2 1 36 36 H 1.07998 * 126.58560 * 0.02739 * 6 5 4 37 37 H 1.08003 * 126.58215 * 180.16323 * 7 6 5 38 38 H 1.07995 * 125.79032 * 179.78989 * 8 7 6 39 39 H 1.09002 * 109.58348 * 246.20112 * 13 12 10 40 40 H 1.08994 * 109.58542 * 6.62532 * 13 12 10 41 41 H 1.09003 * 109.49755 * 174.58591 * 14 13 12 42 42 H 1.09001 * 109.49797 * 294.68031 * 14 13 12 43 43 H 1.08999 * 109.47517 * 59.99594 * 17 15 14 44 44 H 1.09003 * 109.47127 * 179.97438 * 17 15 14 45 45 H 1.09005 * 109.47166 * 299.99637 * 17 15 14 46 46 H 1.08997 * 109.38724 * 301.28141 * 18 15 14 47 47 H 1.08998 * 109.62143 * 181.16967 * 18 15 14 48 48 H 1.08998 * 109.46866 * 308.06991 * 21 19 12 49 49 H 1.09000 * 109.47177 * 188.06745 * 21 19 12 50 50 H 0.97000 * 120.00130 * 354.21902 * 22 21 19 51 51 H 0.96997 * 120.00276 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.4983 -0.0970 3.1690 7 6 0.5390 0.8277 4.2377 8 6 1.7005 1.4974 4.1297 9 8 2.3641 1.0265 3.0612 10 6 2.0325 -0.7104 -1.2303 11 8 2.5506 -1.8024 -1.1309 12 7 1.9059 -0.1322 -2.4412 13 6 1.3833 1.2351 -2.5670 14 6 2.3797 2.0713 -3.3760 15 6 2.6545 1.3782 -4.7125 16 1 1.7190 1.2595 -5.2591 17 6 3.6228 2.2279 -5.5378 18 6 3.2726 0.0006 -4.4606 19 6 2.2876 -0.8577 -3.6606 20 1 1.4001 -1.0524 -4.2628 21 6 2.9517 -2.1830 -3.2824 22 7 1.9574 -3.0720 -2.6764 23 6 2.2927 -4.3625 -2.3644 24 1 3.2902 -4.7248 -2.5646 25 6 1.3523 -5.2032 -1.7849 26 7 0.1368 -4.7616 -1.5405 27 14 1.8119 -6.9613 -1.3522 28 1 3.2276 -7.2091 -1.7256 29 1 1.6403 -7.1728 0.1076 30 1 0.9330 -7.8999 -2.0951 31 1 -0.3634 0.5988 0.8351 32 1 -0.3632 0.4238 -0.9362 33 1 -0.3632 -1.0228 0.1010 34 1 1.6054 -1.7197 1.2953 35 1 3.1264 -0.7993 1.2058 36 1 -0.2967 -0.7950 2.9517 37 1 -0.2189 0.9714 4.9937 38 1 2.0418 2.2807 4.7903 39 1 0.4224 1.2132 -3.0811 40 1 1.2599 1.6717 -1.5759 41 1 1.9603 3.0607 -3.5588 42 1 3.3111 2.1680 -2.8180 43 1 4.5583 2.3471 -4.9911 44 1 3.8190 1.7341 -6.4896 45 1 3.1814 3.2076 -5.7206 46 1 4.1968 0.1167 -3.8945 47 1 3.4872 -0.4840 -5.4130 48 1 3.7548 -1.9965 -2.5695 49 1 3.3616 -2.6523 -4.1768 50 1 1.0616 -2.7466 -2.4963 51 1 -0.5203 -5.3489 -1.1352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264004095.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:51 Heat of formation + Delta-G solvation = -1.666699 kcal Electronic energy + Delta-G solvation = -30876.938561 eV Core-core repulsion = 26971.671559 eV Total energy + Delta-G solvation = -3905.267002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.48829 -41.59838 -38.68356 -36.94486 -35.63140 -34.71821 -33.86232 -33.47652 -31.54714 -30.78921 -29.11719 -27.56270 -27.11187 -24.99224 -24.37749 -24.05970 -22.60042 -22.35789 -21.22303 -20.86916 -19.83782 -19.03579 -18.27440 -17.53171 -17.05541 -16.70811 -16.68285 -16.24889 -15.66873 -15.57885 -15.40029 -15.15472 -15.03776 -14.69304 -14.46304 -14.28008 -14.00442 -13.78266 -13.71486 -13.55436 -13.42778 -13.19382 -13.10558 -12.87756 -12.80588 -12.66225 -12.62833 -12.50243 -12.27433 -12.11165 -12.06670 -11.95283 -11.83186 -11.64534 -11.26047 -11.14803 -10.85331 -10.79957 -9.75650 -9.40630 -9.32072 -8.56641 -7.82411 -4.99871 0.81906 1.43058 1.44893 1.53999 1.72919 2.00460 2.06397 2.30262 2.62053 3.50525 3.57635 3.74340 3.78312 3.83416 3.91911 3.99784 4.12019 4.12914 4.18548 4.26671 4.31955 4.35550 4.45729 4.52241 4.58550 4.65043 4.69583 4.77471 4.82284 4.87273 4.88120 4.95507 4.98069 4.99401 5.04707 5.05558 5.08814 5.15963 5.16443 5.26090 5.28023 5.30731 5.37069 5.45533 5.54183 5.60094 5.64793 5.90241 6.25737 6.38841 6.73106 7.45512 7.64610 8.25599 8.49242 9.42250 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006697 B = 0.005613 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4179.848264 B = 4987.087235 C = 8519.846391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.112 0.888 4 C -0.013 4.013 5 C -0.016 4.016 6 C -0.217 4.217 7 C -0.223 4.223 8 C -0.041 4.041 9 O -0.191 6.191 10 C 0.475 3.525 11 O -0.503 6.503 12 N -0.611 5.611 13 C 0.102 3.898 14 C -0.122 4.122 15 C -0.088 4.088 16 H 0.074 0.926 17 C -0.140 4.140 18 C -0.112 4.112 19 C 0.148 3.852 20 H 0.059 0.941 21 C 0.165 3.835 22 N -0.700 5.700 23 C -0.208 4.208 24 H 0.059 0.941 25 C -0.080 4.080 26 N -0.970 5.970 27 Si 0.961 3.039 28 H -0.273 1.273 29 H -0.300 1.300 30 H -0.293 1.293 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.170 0.830 38 H 0.242 0.758 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.020 0.980 49 H 0.010 0.990 50 H 0.369 0.631 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 23.430 2.062 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.051 4.051 5 C -0.066 4.066 6 C -0.236 4.236 7 C -0.242 4.242 8 C -0.108 4.108 9 O -0.088 6.088 10 C 0.261 3.739 11 O -0.376 6.376 12 N -0.348 5.348 13 C -0.020 4.020 14 C -0.160 4.160 15 C -0.106 4.106 16 H 0.092 0.908 17 C -0.197 4.197 18 C -0.150 4.150 19 C 0.044 3.956 20 H 0.077 0.923 21 C 0.039 3.961 22 N -0.341 5.341 23 C -0.341 4.341 24 H 0.077 0.923 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.792 3.208 28 H -0.198 1.198 29 H -0.227 1.227 30 H -0.220 1.220 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.187 0.813 38 H 0.258 0.742 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.037 0.963 49 H 0.028 0.972 50 H 0.201 0.799 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.758 22.768 2.011 23.022 hybrid contribution -0.444 -1.666 0.606 1.827 sum 2.313 21.102 2.617 21.389 Atomic orbital electron populations 1.21745 0.92079 1.01835 1.03389 1.21136 0.98242 1.00358 0.91028 0.87011 1.19700 1.01522 0.96315 0.87594 1.22230 0.92646 0.93579 0.98147 1.21807 0.99199 1.04187 0.98446 1.22129 1.00651 0.99600 1.01777 1.24825 0.93153 1.02402 0.90381 1.84007 1.45023 1.43103 1.36622 1.20929 0.81593 0.86008 0.85360 1.91126 1.41442 1.19666 1.85322 1.47942 1.65921 1.16161 1.04772 1.21994 0.97291 0.80371 1.02305 1.21969 0.99432 0.99257 0.95351 1.21097 0.99492 0.93479 0.96557 0.90768 1.21764 0.98802 0.99789 0.99358 1.21908 0.97602 0.95989 0.99545 1.21302 0.97305 0.91108 0.85852 0.92340 1.20873 0.92846 0.89012 0.93391 1.42308 1.10758 1.08774 1.72226 1.19485 0.95681 0.88833 1.30097 0.92323 1.25262 0.96350 1.01639 1.03846 1.69805 1.04339 1.36063 1.52096 0.85222 0.77291 0.81449 0.76848 1.19830 1.22742 1.22012 0.90138 0.90818 0.94654 0.90940 0.91206 0.83960 0.81289 0.74209 0.90942 0.88466 0.88176 0.92015 0.92936 0.92586 0.91202 0.92305 0.90455 0.96270 0.97204 0.79944 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.43 71.98 0.61 -3.14 16 2 C -0.09 -2.59 1.86 -11.54 -0.02 -2.61 16 3 H 0.11 2.71 6.82 -2.39 -0.02 2.69 16 4 C -0.01 -0.45 4.53 29.85 0.14 -0.32 16 5 C -0.02 -0.47 6.07 24.83 0.15 -0.32 16 6 C -0.22 -5.86 9.54 22.19 0.21 -5.64 16 7 C -0.22 -4.66 10.91 22.19 0.24 -4.42 16 8 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 9 O -0.19 -5.00 10.65 -2.47 -0.03 -5.02 16 10 C 0.47 17.81 6.27 87.65 0.55 18.36 16 11 O -0.50 -24.73 9.74 -3.03 -0.03 -24.76 16 12 N -0.61 -18.92 2.97 -795.04 -2.36 -21.29 16 13 C 0.10 2.10 5.13 86.36 0.44 2.54 16 14 C -0.12 -1.98 5.36 30.67 0.16 -1.81 16 15 C -0.09 -1.57 2.68 -10.75 -0.03 -1.60 16 16 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 17 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 18 C -0.11 -2.78 4.66 30.69 0.14 -2.63 16 19 C 0.15 4.98 2.94 44.97 0.13 5.12 16 20 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 21 C 0.17 7.43 4.87 86.38 0.42 7.85 16 22 N -0.70 -38.73 3.17 -343.46 -1.09 -39.82 16 23 C -0.21 -12.75 9.71 84.03 0.82 -11.94 16 24 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 25 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 26 N -0.97 -62.96 13.06 21.65 0.28 -62.67 16 27 Si 0.96 50.33 29.55 68.60 2.03 52.36 16 28 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 30 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 31 H 0.08 1.94 6.75 -2.39 -0.02 1.92 16 32 H 0.07 1.83 6.58 -2.39 -0.02 1.82 16 33 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.07 2.95 8.11 -2.39 -0.02 2.93 16 35 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 37 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.24 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.71 5.21 -2.39 -0.01 1.70 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.02 0.96 6.44 -2.39 -0.02 0.94 16 49 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.37 21.67 6.90 -92.71 -0.64 21.03 16 51 H 0.24 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -78.58 393.14 4.97 -73.61 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.27 Total: 33.96 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.90 Total: -6.36 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -3.17 Total: -123.78 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.06 Total: -29.78 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.03 Total: 52.36 kcal Total: -78.58 4.97 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264004095.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.943 kcal (2) G-P(sol) polarization free energy of solvation -78.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds