Wall clock time and date at job start Tue Mar 31 2020 20:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47175 * 2 1 4 4 N 1.46498 * 109.47288 * 120.00647 * 2 1 3 5 5 C 1.36946 * 119.99445 * 275.00093 * 4 2 1 6 6 H 1.07995 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99580 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99693 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00173 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47122 * 89.99896 * 9 7 5 11 11 H 1.48502 * 109.46866 * 209.99813 * 9 7 5 12 12 H 1.48498 * 109.47217 * 329.99885 * 9 7 5 13 13 C 1.53005 * 109.47165 * 240.00101 * 2 1 3 14 14 C 1.53035 * 109.45877 * 59.99979 * 13 2 1 15 15 C 1.53190 * 109.31595 * 181.38471 * 14 13 2 16 16 N 1.46921 * 108.77632 * 305.36917 * 15 14 13 17 17 C 1.34778 * 120.63244 * 233.58550 * 16 15 14 18 18 O 1.21285 * 119.99948 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00331 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.81040 * 61.85330 * 19 17 16 21 21 C 1.55007 * 110.74419 * 298.54242 * 19 17 16 22 22 C 1.55817 * 102.78463 * 241.67053 * 21 19 17 23 23 H 1.09002 * 115.38534 * 158.84410 * 22 21 19 24 24 O 1.46541 * 101.24451 * 32.42359 * 22 21 19 25 25 C 1.46539 * 99.67955 * 305.83635 * 24 22 21 26 26 H 1.09003 * 116.25563 * 179.97438 * 25 24 22 27 27 C 1.55815 * 101.24289 * 305.83886 * 25 24 22 28 28 H 1.09007 * 118.71550 * 172.21154 * 27 25 24 29 29 C 1.52997 * 117.24445 * 330.28418 * 27 25 24 30 30 C 1.53005 * 60.86468 * 89.21847 * 29 27 25 31 31 H 1.08998 * 120.22946 * 114.58406 * 30 29 27 32 32 C 1.46929 * 118.74029 * 53.85667 * 16 15 14 33 33 C 1.53032 * 109.46001 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47007 * 299.99549 * 1 2 3 35 35 H 1.09001 * 109.47191 * 59.99659 * 1 2 3 36 36 H 1.09002 * 109.47258 * 179.97438 * 1 2 3 37 37 H 0.96997 * 120.00783 * 94.99812 * 4 2 1 38 38 H 0.97006 * 119.99936 * 180.02562 * 8 7 5 39 39 H 1.08998 * 109.46190 * 300.02941 * 13 2 1 40 40 H 1.09005 * 109.50271 * 61.43546 * 14 13 2 41 41 H 1.09000 * 109.52951 * 301.35841 * 14 13 2 42 42 H 1.08997 * 109.59169 * 185.57591 * 15 14 13 43 43 H 1.09008 * 109.70122 * 65.22142 * 15 14 13 44 44 H 1.08999 * 110.74920 * 359.97438 * 21 19 17 45 45 H 1.08995 * 110.74773 * 123.16241 * 21 19 17 46 46 H 1.09001 * 117.41301 * 341.48062 * 29 27 25 47 47 H 1.08997 * 117.41022 * 196.94836 * 29 27 25 48 48 H 1.08993 * 109.58712 * 65.92545 * 32 16 15 49 49 H 1.08996 * 109.58840 * 186.35718 * 32 16 15 50 50 H 1.09005 * 109.50051 * 298.56579 * 33 13 2 51 51 H 1.09002 * 109.50179 * 58.66865 * 33 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.7375 -0.0055 4.6429 9 14 3.0557 -2.4746 3.4252 10 1 4.4885 -2.6167 3.0619 11 1 2.8156 -3.1049 4.7482 12 1 2.2162 -3.1431 2.3988 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0004 -2.4986 15 6 2.0135 -0.7441 -3.7470 16 7 3.4752 -0.8771 -3.6816 17 6 4.2491 -0.4584 -4.7025 18 8 3.7400 0.0332 -5.6874 19 6 5.7471 -0.6021 -4.6207 20 1 6.0317 -1.6513 -4.5413 21 6 6.3125 0.2118 -3.4288 22 6 7.2507 1.2407 -4.1281 23 1 7.4792 2.1346 -3.5476 24 8 6.5473 1.4531 -5.3960 25 6 6.4336 0.0646 -5.8503 26 1 5.9327 -0.0906 -6.8059 27 6 7.9207 -0.3968 -5.7922 28 1 8.1492 -1.4499 -5.9566 29 6 8.9942 0.6690 -6.0214 30 6 8.4862 0.4169 -4.6003 31 1 9.1563 0.0129 -3.8416 32 6 4.0769 -1.4806 -2.4847 33 6 3.5703 -0.7217 -1.2487 34 1 -0.3633 0.5137 0.8900 35 1 -0.3633 0.5139 -0.8900 36 1 -0.3634 -1.0277 -0.0005 37 1 2.2491 -1.6318 1.1525 38 1 3.0609 -0.4628 5.4349 39 1 1.6762 -1.7487 -1.2494 40 1 1.9137 1.0205 -2.5119 41 1 0.4400 0.0221 -2.4873 42 1 1.7372 -0.1810 -4.6384 43 1 1.5579 -1.7338 -3.7842 44 1 5.5108 0.7216 -2.8945 45 1 6.8760 -0.4324 -2.7540 46 1 8.6865 1.5948 -6.5075 47 1 9.9997 0.3246 -6.2632 48 1 3.7860 -2.5289 -2.4186 49 1 5.1625 -1.4034 -2.5430 50 1 3.9345 0.3055 -1.2741 51 1 3.9337 -1.2148 -0.3471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267489797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:18 Heat of formation + Delta-G solvation = -15.580509 kcal Electronic energy + Delta-G solvation = -30467.635365 eV Core-core repulsion = 26561.765015 eV Total energy + Delta-G solvation = -3905.870350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97356 -39.96401 -37.96048 -35.59332 -34.64352 -33.28491 -32.42044 -30.94389 -30.88240 -29.71499 -28.76305 -25.72083 -24.75728 -23.60236 -22.79148 -22.63620 -21.09168 -20.69543 -20.26237 -19.88301 -18.89866 -17.73008 -17.40395 -17.07690 -16.35244 -15.92310 -15.27826 -14.92055 -14.61050 -14.37986 -14.29987 -13.93179 -13.80020 -13.45002 -13.34394 -13.05331 -12.84552 -12.69685 -12.55788 -12.43429 -12.34617 -12.03302 -11.88012 -11.63353 -11.56506 -11.48030 -11.40464 -11.12866 -10.99293 -10.83722 -10.57512 -10.44826 -10.33807 -10.24089 -10.13170 -9.99780 -9.89557 -9.68065 -9.59466 -8.96129 -8.65619 -7.28588 -5.79165 -3.14199 2.52410 2.81840 3.23553 3.32319 3.34721 3.41504 3.44996 4.10106 4.18210 4.26439 4.43654 4.46998 4.55527 4.58488 4.75690 4.82342 4.83476 4.90575 4.92780 5.03358 5.13228 5.18368 5.26116 5.26427 5.41669 5.43263 5.44933 5.50943 5.55067 5.57887 5.63062 5.66212 5.76157 5.76874 5.81177 5.90029 5.90881 5.99719 6.11473 6.18132 6.22267 6.31795 6.33942 6.42143 6.51964 6.60487 6.83420 7.02162 7.32457 7.98079 8.08939 8.40149 9.18953 9.91382 10.11613 11.39500 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003167 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.650477 B = 8840.345570 C = 9974.099985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.054 0.946 4 N -0.747 5.747 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.093 4.093 14 C -0.127 4.127 15 C 0.113 3.887 16 N -0.607 5.607 17 C 0.527 3.473 18 O -0.541 6.541 19 C -0.134 4.134 20 H 0.109 0.891 21 C -0.136 4.136 22 C 0.089 3.911 23 H 0.135 0.865 24 O -0.362 6.362 25 C 0.119 3.881 26 H 0.138 0.862 27 C -0.198 4.198 28 H 0.123 0.877 29 C -0.134 4.134 30 C -0.197 4.197 31 H 0.124 0.876 32 C 0.098 3.902 33 C -0.124 4.124 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.067 0.933 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.268 -3.433 -21.391 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.072 0.928 4 N -0.390 5.390 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.112 4.112 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.340 5.340 17 C 0.315 3.685 18 O -0.418 6.418 19 C -0.156 4.156 20 H 0.127 0.873 21 C -0.174 4.174 22 C 0.031 3.969 23 H 0.153 0.847 24 O -0.280 6.280 25 C 0.060 3.940 26 H 0.156 0.844 27 C -0.216 4.216 28 H 0.141 0.859 29 C -0.171 4.171 30 C -0.215 4.215 31 H 0.142 0.858 32 C -0.025 4.025 33 C -0.162 4.162 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.192 0.808 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.901 -2.777 -21.816 23.726 hybrid contribution 0.377 -1.762 0.542 1.882 sum 9.278 -4.539 -21.274 23.649 Atomic orbital electron populations 1.22465 0.99036 1.00757 1.00429 1.20186 0.91785 0.95616 0.85021 0.92815 1.42788 1.79803 1.09237 1.07175 1.19069 1.36584 0.95455 0.85751 0.89318 1.24663 1.01672 0.97319 0.95571 1.69700 1.52824 1.35525 1.00287 0.86583 0.78325 0.86978 0.76830 1.21145 1.21860 1.20383 1.21418 0.94907 0.99902 0.95004 1.21998 1.01271 0.99741 0.93557 1.21630 0.79037 1.00675 0.99623 1.48108 1.07158 1.60881 1.17845 1.20267 0.88512 0.77277 0.82449 1.90679 1.75154 1.44320 1.31644 1.22913 0.92636 1.02212 0.97819 0.87341 1.23298 0.99720 0.97780 0.96567 1.24259 0.89202 0.97325 0.86133 0.84735 1.90158 1.77512 1.24897 1.35420 1.23949 0.92011 0.80784 0.97207 0.84400 1.24325 0.93636 0.98479 1.05178 0.85941 1.22804 0.97292 1.00059 0.96912 1.24325 1.00789 1.04224 0.92170 0.85792 1.22121 0.98569 0.97134 0.84639 1.21984 0.96155 1.01231 0.96820 0.92532 0.93948 0.93732 0.80803 0.93111 0.91507 0.91461 0.90256 0.89261 0.91725 0.89435 0.89173 0.88178 0.88003 0.91394 0.89564 0.91383 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.14 37.16 0.34 -2.45 16 2 C 0.18 3.25 2.47 -67.93 -0.17 3.08 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.75 -16.44 4.21 -53.42 -0.22 -16.67 16 5 C -0.24 -6.44 10.41 -15.05 -0.16 -6.60 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 7 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 8 N -0.94 -28.80 13.97 55.49 0.78 -28.02 16 9 Si 0.88 21.27 27.74 -169.99 -4.71 16.56 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 13 C -0.09 -1.29 1.79 -90.58 -0.16 -1.45 16 14 C -0.13 -1.55 5.04 -26.62 -0.13 -1.68 16 15 C 0.11 1.32 6.43 -3.71 -0.02 1.29 16 16 N -0.61 -7.13 2.95 -172.50 -0.51 -7.64 16 17 C 0.53 6.77 6.95 -10.98 -0.08 6.69 16 18 O -0.54 -8.78 15.31 5.55 0.09 -8.70 16 19 C -0.13 -1.32 1.96 -89.21 -0.17 -1.50 16 20 H 0.11 0.85 7.92 -51.93 -0.41 0.44 16 21 C -0.14 -1.25 4.28 -24.17 -0.10 -1.35 16 22 C 0.09 0.84 5.66 -23.72 -0.13 0.71 16 23 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 24 O -0.36 -4.55 10.78 -35.23 -0.38 -4.93 16 25 C 0.12 1.24 4.58 -23.73 -0.11 1.13 16 26 H 0.14 1.51 7.74 -51.93 -0.40 1.11 16 27 C -0.20 -1.58 6.63 -88.06 -0.58 -2.17 16 28 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 29 C -0.13 -1.03 9.80 -26.73 -0.26 -1.30 16 30 C -0.20 -1.54 6.63 -88.06 -0.58 -2.13 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 C 0.10 1.03 5.67 -3.48 -0.02 1.01 16 33 C -0.12 -1.63 5.23 -26.39 -0.14 -1.77 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.36 7.77 5.44 -40.82 -0.22 7.54 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.90 6.36 -51.93 -0.33 0.57 16 42 H 0.09 1.14 7.01 -51.93 -0.36 0.77 16 43 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 44 H 0.09 0.94 6.87 -51.93 -0.36 0.58 16 45 H 0.09 0.66 7.56 -51.93 -0.39 0.27 16 46 H 0.10 0.89 7.65 -51.93 -0.40 0.49 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.76 4.42 -51.93 -0.23 0.53 16 50 H 0.07 0.95 7.76 -51.93 -0.40 0.54 16 51 H 0.08 1.27 7.41 -51.93 -0.38 0.88 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -32.84 382.28 -10.26 -43.10 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.46 Total: 9.02 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.59 Total: -8.48 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.04 Total: -52.33 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.29 Total: -13.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.84 -10.26 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.521 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds