Wall clock time and date at job start Tue Mar 31 2020 20:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47175 * 2 1 4 4 N 1.46498 * 109.47288 * 120.00647 * 2 1 3 5 5 C 1.36946 * 119.99445 * 275.00093 * 4 2 1 6 6 H 1.07995 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99580 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99693 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00173 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47122 * 89.99896 * 9 7 5 11 11 H 1.48502 * 109.46866 * 209.99813 * 9 7 5 12 12 H 1.48498 * 109.47217 * 329.99885 * 9 7 5 13 13 C 1.53005 * 109.47165 * 240.00101 * 2 1 3 14 14 C 1.53035 * 109.45877 * 59.99979 * 13 2 1 15 15 C 1.53190 * 109.31595 * 181.38471 * 14 13 2 16 16 N 1.46921 * 108.77632 * 305.36917 * 15 14 13 17 17 C 1.34778 * 120.63244 * 233.58550 * 16 15 14 18 18 O 1.21285 * 119.99948 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00331 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.81040 * 61.85330 * 19 17 16 21 21 C 1.55007 * 110.74419 * 298.54242 * 19 17 16 22 22 C 1.55817 * 102.78463 * 241.67053 * 21 19 17 23 23 H 1.09002 * 115.38534 * 158.84410 * 22 21 19 24 24 O 1.46541 * 101.24451 * 32.42359 * 22 21 19 25 25 C 1.46539 * 99.67955 * 305.83635 * 24 22 21 26 26 H 1.09003 * 116.25563 * 179.97438 * 25 24 22 27 27 C 1.55815 * 101.24289 * 305.83886 * 25 24 22 28 28 H 1.09007 * 118.71550 * 172.21154 * 27 25 24 29 29 C 1.52997 * 117.24445 * 330.28418 * 27 25 24 30 30 C 1.53005 * 60.86468 * 89.21847 * 29 27 25 31 31 H 1.08998 * 120.22946 * 114.58406 * 30 29 27 32 32 C 1.46929 * 118.74029 * 53.85667 * 16 15 14 33 33 C 1.53032 * 109.46001 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47007 * 299.99549 * 1 2 3 35 35 H 1.09001 * 109.47191 * 59.99659 * 1 2 3 36 36 H 1.09002 * 109.47258 * 179.97438 * 1 2 3 37 37 H 0.96997 * 120.00783 * 94.99812 * 4 2 1 38 38 H 0.97006 * 119.99936 * 180.02562 * 8 7 5 39 39 H 1.08998 * 109.46190 * 300.02941 * 13 2 1 40 40 H 1.09005 * 109.50271 * 61.43546 * 14 13 2 41 41 H 1.09000 * 109.52951 * 301.35841 * 14 13 2 42 42 H 1.08997 * 109.59169 * 185.57591 * 15 14 13 43 43 H 1.09008 * 109.70122 * 65.22142 * 15 14 13 44 44 H 1.08999 * 110.74920 * 359.97438 * 21 19 17 45 45 H 1.08995 * 110.74773 * 123.16241 * 21 19 17 46 46 H 1.09001 * 117.41301 * 341.48062 * 29 27 25 47 47 H 1.08997 * 117.41022 * 196.94836 * 29 27 25 48 48 H 1.08993 * 109.58712 * 65.92545 * 32 16 15 49 49 H 1.08996 * 109.58840 * 186.35718 * 32 16 15 50 50 H 1.09005 * 109.50051 * 298.56579 * 33 13 2 51 51 H 1.09002 * 109.50179 * 58.66865 * 33 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.7375 -0.0055 4.6429 9 14 3.0557 -2.4746 3.4252 10 1 4.4885 -2.6167 3.0619 11 1 2.8156 -3.1049 4.7482 12 1 2.2162 -3.1431 2.3988 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0004 -2.4986 15 6 2.0135 -0.7441 -3.7470 16 7 3.4752 -0.8771 -3.6816 17 6 4.2491 -0.4584 -4.7025 18 8 3.7400 0.0332 -5.6874 19 6 5.7471 -0.6021 -4.6207 20 1 6.0317 -1.6513 -4.5413 21 6 6.3125 0.2118 -3.4288 22 6 7.2507 1.2407 -4.1281 23 1 7.4792 2.1346 -3.5476 24 8 6.5473 1.4531 -5.3960 25 6 6.4336 0.0646 -5.8503 26 1 5.9327 -0.0906 -6.8059 27 6 7.9207 -0.3968 -5.7922 28 1 8.1492 -1.4499 -5.9566 29 6 8.9942 0.6690 -6.0214 30 6 8.4862 0.4169 -4.6003 31 1 9.1563 0.0129 -3.8416 32 6 4.0769 -1.4806 -2.4847 33 6 3.5703 -0.7217 -1.2487 34 1 -0.3633 0.5137 0.8900 35 1 -0.3633 0.5139 -0.8900 36 1 -0.3634 -1.0277 -0.0005 37 1 2.2491 -1.6318 1.1525 38 1 3.0609 -0.4628 5.4349 39 1 1.6762 -1.7487 -1.2494 40 1 1.9137 1.0205 -2.5119 41 1 0.4400 0.0221 -2.4873 42 1 1.7372 -0.1810 -4.6384 43 1 1.5579 -1.7338 -3.7842 44 1 5.5108 0.7216 -2.8945 45 1 6.8760 -0.4324 -2.7540 46 1 8.6865 1.5948 -6.5075 47 1 9.9997 0.3246 -6.2632 48 1 3.7860 -2.5289 -2.4186 49 1 5.1625 -1.4034 -2.5430 50 1 3.9345 0.3055 -1.2741 51 1 3.9337 -1.2148 -0.3471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267489797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:17 Heat of formation + Delta-G solvation = -36.111472 kcal Electronic energy + Delta-G solvation = -30468.525654 eV Core-core repulsion = 26561.765015 eV Total energy + Delta-G solvation = -3906.760639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.72851 -40.92569 -39.15684 -36.98452 -35.34050 -34.72868 -33.65025 -32.50242 -31.87515 -30.51227 -30.22188 -26.82560 -25.88298 -24.92930 -23.89002 -23.51477 -22.20282 -21.48027 -21.24052 -20.95469 -19.97291 -19.40294 -18.35023 -17.89123 -17.15516 -16.88577 -16.65643 -16.18385 -16.04144 -15.33785 -15.26319 -15.15516 -14.86760 -14.72819 -14.41783 -14.27468 -14.20845 -13.79247 -13.64760 -13.56276 -13.28862 -13.08159 -12.94149 -12.80922 -12.78539 -12.45890 -12.33199 -12.27580 -12.24930 -12.08248 -11.99507 -11.81038 -11.50587 -11.37827 -11.25748 -11.21514 -11.02007 -10.91873 -10.63164 -10.61121 -9.65028 -9.25396 -7.97300 -5.29848 1.40474 1.45123 1.52589 1.56384 1.94645 2.53126 2.62160 2.72755 3.30234 3.34445 3.47540 3.55490 3.57017 3.72986 3.76857 3.82011 3.87919 3.94333 4.11367 4.14211 4.16551 4.20863 4.28142 4.38393 4.48454 4.54131 4.56756 4.58891 4.63451 4.75452 4.78173 4.82252 4.85547 4.87209 4.87326 4.93865 4.96583 5.02720 5.07508 5.10562 5.11448 5.22008 5.31316 5.34525 5.47252 5.52535 5.57538 5.66070 5.82862 6.26739 6.38821 7.13075 7.14041 7.90293 8.11008 9.24916 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003167 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.650477 B = 8840.345570 C = 9974.099985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 H 0.031 0.969 4 N -0.745 5.745 5 C -0.222 4.222 6 H 0.048 0.952 7 C -0.068 4.068 8 N -0.990 5.990 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.304 1.304 12 H -0.249 1.249 13 C -0.082 4.082 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.605 5.605 17 C 0.521 3.479 18 O -0.583 6.583 19 C -0.127 4.127 20 H 0.139 0.861 21 C -0.131 4.131 22 C 0.077 3.923 23 H 0.138 0.862 24 O -0.399 6.399 25 C 0.108 3.892 26 H 0.123 0.877 27 C -0.191 4.191 28 H 0.147 0.853 29 C -0.138 4.138 30 C -0.188 4.188 31 H 0.147 0.853 32 C 0.104 3.896 33 C -0.122 4.122 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.366 0.634 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.117 0.883 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.053 0.947 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 -6.687 -22.860 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.070 3.930 3 H 0.050 0.950 4 N -0.389 5.389 5 C -0.353 4.353 6 H 0.066 0.934 7 C -0.259 4.259 8 N -0.641 5.641 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.231 1.231 12 H -0.173 1.173 13 C -0.102 4.102 14 C -0.156 4.156 15 C -0.009 4.009 16 N -0.337 5.337 17 C 0.310 3.690 18 O -0.463 6.463 19 C -0.148 4.148 20 H 0.157 0.843 21 C -0.169 4.169 22 C 0.020 3.980 23 H 0.155 0.845 24 O -0.318 6.318 25 C 0.050 3.950 26 H 0.140 0.860 27 C -0.209 4.209 28 H 0.164 0.836 29 C -0.175 4.175 30 C -0.206 4.206 31 H 0.164 0.836 32 C -0.017 4.017 33 C -0.160 4.160 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.200 0.800 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.135 0.865 46 H 0.098 0.902 47 H 0.142 0.858 48 H 0.107 0.893 49 H 0.125 0.875 50 H 0.071 0.929 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.182 -6.040 -23.335 26.166 hybrid contribution -0.111 -0.549 0.954 1.106 sum 10.071 -6.589 -22.381 25.412 Atomic orbital electron populations 1.22356 0.97833 1.01342 1.00452 1.20383 0.92547 0.94765 0.85331 0.95039 1.42714 1.79977 1.09430 1.06754 1.18968 1.34648 0.94048 0.87636 0.93355 1.25516 1.02617 1.02732 0.95042 1.69907 1.55048 1.37852 1.01286 0.85396 0.78949 0.80483 0.76866 1.19756 1.23102 1.17340 1.21300 0.95502 1.00078 0.93286 1.21906 1.01966 0.98737 0.93028 1.21619 0.79349 1.01430 0.98466 1.48194 1.07196 1.60396 1.17957 1.20844 0.89853 0.76358 0.81936 1.90661 1.76129 1.46183 1.33366 1.22938 0.90262 1.03874 0.97722 0.84330 1.23287 0.99274 0.97855 0.96443 1.24474 0.90151 0.98060 0.85321 0.84461 1.90126 1.78271 1.26524 1.36922 1.24011 0.93923 0.80201 0.96896 0.85957 1.24313 0.91736 0.99537 1.05296 0.83581 1.22884 0.98296 0.99390 0.96921 1.24346 1.00239 1.03526 0.92507 0.83576 1.22178 0.99714 0.97392 0.82457 1.21922 0.95540 1.00779 0.97803 0.95582 0.90920 0.92769 0.80014 0.93560 0.90073 0.93028 0.88970 0.90544 0.89657 0.91426 0.86478 0.90177 0.85806 0.89318 0.87503 0.92862 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 9.14 71.98 0.66 -4.51 16 2 C 0.18 6.18 2.47 44.99 0.11 6.29 16 3 H 0.03 1.23 8.08 -2.39 -0.02 1.22 16 4 N -0.75 -32.15 4.21 -322.94 -1.36 -33.51 16 5 C -0.22 -12.21 10.41 84.03 0.87 -11.34 16 6 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 8 N -0.99 -62.78 13.97 21.65 0.30 -62.48 16 9 Si 0.96 43.35 27.74 68.60 1.90 45.25 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.25 -9.99 6.52 99.48 0.65 -9.34 16 13 C -0.08 -2.11 1.79 -10.77 -0.02 -2.12 16 14 C -0.12 -2.65 5.04 30.67 0.15 -2.50 16 15 C 0.11 2.42 6.43 86.36 0.56 2.98 16 16 N -0.61 -12.89 2.95 -818.05 -2.41 -15.30 16 17 C 0.52 12.72 6.95 87.66 0.61 13.33 16 18 O -0.58 -19.04 15.31 -3.04 -0.05 -19.09 16 19 C -0.13 -2.22 1.96 -9.88 -0.02 -2.24 16 20 H 0.14 1.58 7.92 -2.39 -0.02 1.56 16 21 C -0.13 -2.13 4.28 32.25 0.14 -1.99 16 22 C 0.08 1.38 5.66 32.54 0.18 1.56 16 23 H 0.14 2.23 8.14 -2.39 -0.02 2.22 16 24 O -0.40 -10.14 10.78 -148.98 -1.61 -11.74 16 25 C 0.11 2.15 4.58 32.54 0.15 2.30 16 26 H 0.12 2.74 7.74 -2.39 -0.02 2.72 16 27 C -0.19 -2.56 6.63 -9.14 -0.06 -2.62 16 28 H 0.15 1.29 8.14 -2.38 -0.02 1.27 16 29 C -0.14 -1.86 9.80 30.60 0.30 -1.56 16 30 C -0.19 -2.44 6.63 -9.13 -0.06 -2.50 16 31 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 32 C 0.10 1.84 5.67 86.51 0.49 2.33 16 33 C -0.12 -2.96 5.23 30.82 0.16 -2.80 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.88 6.40 -2.39 -0.02 1.87 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.37 14.86 5.44 -92.71 -0.50 14.35 16 38 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.09 1.84 6.36 -2.39 -0.02 1.83 16 42 H 0.08 1.88 7.01 -2.39 -0.02 1.86 16 43 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.07 1.38 6.87 -2.39 -0.02 1.37 16 45 H 0.12 1.26 7.56 -2.39 -0.02 1.24 16 46 H 0.08 1.41 7.65 -2.39 -0.02 1.39 16 47 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.11 1.46 4.42 -2.39 -0.01 1.45 16 50 H 0.05 1.44 7.76 -2.38 -0.02 1.42 16 51 H 0.07 1.99 7.41 -2.39 -0.02 1.97 16 Total: -1.00 -75.19 382.28 1.84 -73.35 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.37 Total: 32.37 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 4.69 Total: -8.85 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -3.47 Total: -111.29 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.65 Total: -30.83 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.25 kcal Total: -75.19 1.84 -73.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.241 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds