Wall clock time and date at job start Tue Mar 31 2020 20:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47610 * 2 1 4 4 N 1.46501 * 109.46678 * 239.99562 * 2 1 3 5 5 C 1.36943 * 119.99471 * 85.00877 * 4 2 1 6 6 H 1.07991 * 120.00341 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99691 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00196 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00213 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47156 * 90.00250 * 9 7 5 11 11 H 1.48498 * 109.47244 * 210.00556 * 9 7 5 12 12 H 1.48502 * 109.47153 * 330.00183 * 9 7 5 13 13 C 1.53004 * 109.47257 * 120.00578 * 2 1 3 14 14 C 1.53044 * 109.45521 * 299.99715 * 13 2 1 15 15 C 1.53193 * 109.31242 * 181.38633 * 14 13 2 16 16 N 1.46924 * 108.77315 * 305.36186 * 15 14 13 17 17 C 1.34777 * 120.62823 * 233.58402 * 16 15 14 18 18 O 1.21281 * 120.00085 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99715 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.66451 * 61.76922 * 19 17 16 21 21 C 1.54997 * 110.74894 * 298.54826 * 19 17 16 22 22 C 1.55825 * 102.95067 * 241.40148 * 21 19 17 23 23 H 1.09001 * 115.38413 * 158.93026 * 22 21 19 24 24 O 1.47031 * 101.01878 * 32.42536 * 22 21 19 25 25 C 1.46537 * 99.71197 * 305.84765 * 24 22 21 26 26 H 1.09004 * 116.25800 * 180.02562 * 25 24 22 27 27 C 1.55810 * 101.24898 * 305.86885 * 25 24 22 28 28 H 1.09003 * 118.19708 * 171.69659 * 27 25 24 29 29 C 1.53004 * 117.23998 * 330.27853 * 27 25 24 30 30 C 1.52998 * 60.86701 * 89.21836 * 29 27 25 31 31 H 1.08995 * 120.22481 * 113.05940 * 30 29 27 32 32 C 1.46922 * 118.73760 * 53.86318 * 16 15 14 33 33 C 1.53040 * 109.46082 * 60.05701 * 13 2 1 34 34 H 1.09001 * 109.47219 * 59.99569 * 1 2 3 35 35 H 1.08998 * 109.47610 * 180.02562 * 1 2 3 36 36 H 1.09005 * 109.46854 * 300.00158 * 1 2 3 37 37 H 0.96995 * 120.00916 * 264.99805 * 4 2 1 38 38 H 0.96994 * 120.00489 * 179.97438 * 8 7 5 39 39 H 1.08996 * 109.44999 * 180.02562 * 13 2 1 40 40 H 1.08999 * 109.50239 * 61.43111 * 14 13 2 41 41 H 1.09002 * 109.49545 * 301.33597 * 14 13 2 42 42 H 1.09005 * 109.58493 * 185.57420 * 15 14 13 43 43 H 1.09001 * 109.58787 * 65.14968 * 15 14 13 44 44 H 1.09002 * 110.75082 * 359.81926 * 21 19 17 45 45 H 1.08999 * 110.75046 * 122.98702 * 21 19 17 46 46 H 1.08995 * 117.41254 * 196.95409 * 29 27 25 47 47 H 1.09001 * 117.40750 * 341.48131 * 29 27 25 48 48 H 1.08994 * 109.59128 * 65.92619 * 32 16 15 49 49 H 1.09004 * 109.58494 * 186.35094 * 32 16 15 50 50 H 1.08995 * 109.50344 * 298.57049 * 33 13 2 51 51 H 1.09006 * 109.49215 * 58.63832 * 33 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6112 -0.6621 -3.5093 8 7 2.7365 -0.0056 -4.6432 9 14 3.0552 -2.4746 -3.4255 10 1 1.8577 -3.2928 -3.7444 11 1 4.1302 -2.7668 -4.4074 12 1 3.5307 -2.8050 -2.0580 13 6 2.0400 -0.7214 1.2492 14 6 1.5298 0.0003 2.4986 15 6 2.0706 -0.7041 3.7469 16 7 1.7085 -2.1265 3.6815 17 6 1.0558 -2.7166 4.7024 18 8 0.7615 -2.0725 5.6871 19 6 0.6908 -4.1764 4.6200 20 1 1.5861 -4.7928 4.5385 21 6 -0.2657 -4.4369 3.4286 22 6 -1.5482 -4.9849 4.1236 23 1 -2.4661 -4.9036 3.5416 24 8 -1.5128 -4.2513 5.3974 25 6 -0.1648 -4.6059 5.8495 26 1 0.1487 -4.1876 6.8060 27 6 -0.2228 -6.1617 5.7876 28 1 0.7016 -6.7182 5.9425 29 6 -1.5842 -6.8214 6.0166 30 6 -1.1794 -6.4223 4.5961 31 1 -0.9973 -7.1878 3.8420 32 6 2.0768 -2.8949 2.4846 33 6 1.5309 -2.1646 1.2481 34 1 -0.3634 0.5139 -0.8899 35 1 -0.3634 -1.0276 0.0005 36 1 -0.3633 0.5139 0.8900 37 1 2.2489 -1.6318 -1.1527 38 1 3.0597 -0.4629 -5.4352 39 1 3.1300 -0.7208 1.2490 40 1 0.4401 -0.0216 2.5119 41 1 1.8732 1.0347 2.4870 42 1 1.6317 -0.2559 4.6384 43 1 3.1555 -0.6044 3.7816 44 1 -0.4809 -3.5103 2.8964 45 1 0.1544 -5.1807 2.7515 46 1 -1.5927 -7.8847 6.2559 47 1 -2.3549 -6.2250 6.5050 48 1 3.1621 -2.9703 2.4184 49 1 1.6420 -3.8927 2.5429 50 1 0.4413 -2.1662 1.2732 51 1 1.8749 -2.6710 0.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267489798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:22 Heat of formation + Delta-G solvation = -12.806159 kcal Electronic energy + Delta-G solvation = -30580.401202 eV Core-core repulsion = 26674.651156 eV Total energy + Delta-G solvation = -3905.750045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.99821 -40.03008 -38.08308 -35.59219 -34.67592 -33.30361 -32.48408 -30.94187 -30.78455 -29.76609 -28.68083 -25.77189 -24.74378 -23.62574 -23.26385 -22.72903 -21.34796 -20.78110 -20.31878 -19.57576 -18.49441 -17.81154 -17.44619 -17.10214 -16.41346 -15.93076 -15.23931 -14.90978 -14.70585 -14.56279 -14.43570 -14.09694 -13.79486 -13.40151 -13.33263 -13.22286 -12.91966 -12.76404 -12.63613 -12.45099 -12.13384 -12.05021 -11.94256 -11.66773 -11.59406 -11.58734 -11.41389 -11.33674 -10.95820 -10.72219 -10.62729 -10.47258 -10.36083 -10.29796 -10.12679 -10.04503 -9.84665 -9.70044 -9.57882 -8.96271 -8.69353 -7.28984 -5.79043 -3.14118 2.49032 2.77959 3.18778 3.31147 3.33626 3.39324 3.40900 4.05431 4.12895 4.21532 4.38918 4.42228 4.54154 4.55397 4.69776 4.77041 4.78386 4.88994 4.91733 4.98197 5.08960 5.13918 5.19768 5.26302 5.36298 5.40454 5.42923 5.47821 5.48939 5.50294 5.57564 5.61669 5.70978 5.71687 5.83981 5.85311 5.86665 5.96742 6.06257 6.13863 6.16608 6.20354 6.30343 6.45179 6.52427 6.58877 6.79838 7.04608 7.29291 7.98505 8.05734 8.40333 9.19199 9.91546 10.11523 11.39670 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.003080 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.215323 B = 9089.021129 C =10003.524895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.055 0.945 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.093 4.093 14 C -0.127 4.127 15 C 0.112 3.888 16 N -0.606 5.606 17 C 0.527 3.473 18 O -0.540 6.540 19 C -0.134 4.134 20 H 0.108 0.892 21 C -0.136 4.136 22 C 0.089 3.911 23 H 0.135 0.865 24 O -0.362 6.362 25 C 0.119 3.881 26 H 0.139 0.861 27 C -0.200 4.200 28 H 0.123 0.877 29 C -0.131 4.131 30 C -0.197 4.197 31 H 0.123 0.877 32 C 0.099 3.901 33 C -0.130 4.130 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -13.379 21.506 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.073 0.927 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.113 4.113 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.339 5.339 17 C 0.315 3.685 18 O -0.417 6.417 19 C -0.156 4.156 20 H 0.126 0.874 21 C -0.174 4.174 22 C 0.032 3.968 23 H 0.153 0.847 24 O -0.281 6.281 25 C 0.060 3.940 26 H 0.156 0.844 27 C -0.218 4.218 28 H 0.141 0.859 29 C -0.168 4.168 30 C -0.215 4.215 31 H 0.141 0.859 32 C -0.024 4.024 33 C -0.168 4.168 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.128 -12.681 21.932 25.848 hybrid contribution 0.712 -1.555 -0.548 1.796 sum -4.415 -14.237 21.384 26.066 Atomic orbital electron populations 1.22495 0.99046 1.00784 1.00352 1.20165 0.91944 0.95487 0.85010 0.92721 1.42844 1.79755 1.09435 1.07186 1.19090 1.36647 0.95621 0.85621 0.89264 1.24671 1.01635 0.97402 0.95594 1.69694 1.52859 1.35525 1.00253 0.86579 0.78123 0.87057 0.76922 1.21140 1.21790 1.20419 1.21432 1.00447 0.94351 0.95028 1.22000 1.01634 0.99436 0.93529 1.21646 0.99724 0.79994 0.99641 1.48082 1.57083 1.11014 1.17745 1.20252 0.76922 0.88876 0.82473 1.90682 1.53908 1.65462 1.31622 1.22909 1.00506 0.94376 0.97777 0.87353 1.23287 0.94740 1.02702 0.96628 1.24310 0.98441 0.87984 0.86092 0.84721 1.90230 1.32159 1.70352 1.35348 1.23951 0.82097 0.90709 0.97213 0.84382 1.24335 0.95885 0.96244 1.05350 0.85915 1.22794 0.96725 1.00566 0.96705 1.24319 1.06111 0.98923 0.92173 0.85887 1.22074 1.00365 0.95342 0.84574 1.22084 1.01520 0.96488 0.96739 0.92628 0.93532 0.94043 0.80696 0.93097 0.90956 0.91064 0.90541 0.89202 0.91612 0.89500 0.89263 0.87979 0.88113 0.91222 0.89611 0.90949 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 8.79 37.16 0.33 -2.47 16 2 C 0.18 3.27 2.72 -67.93 -0.18 3.09 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.75 -16.68 4.85 -53.43 -0.26 -16.93 16 5 C -0.24 -6.56 10.41 -15.06 -0.16 -6.71 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -29.00 13.97 55.49 0.78 -28.22 16 9 Si 0.88 21.38 27.74 -169.99 -4.71 16.66 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 13 C -0.09 -1.30 2.14 -90.57 -0.19 -1.50 16 14 C -0.13 -1.55 4.96 -26.61 -0.13 -1.68 16 15 C 0.11 1.31 6.43 -3.71 -0.02 1.28 16 16 N -0.61 -6.96 2.95 -172.50 -0.51 -7.47 16 17 C 0.53 6.59 6.95 -10.98 -0.08 6.51 16 18 O -0.54 -8.62 15.32 5.56 0.09 -8.53 16 19 C -0.13 -1.26 1.95 -89.21 -0.17 -1.44 16 20 H 0.11 0.81 7.91 -51.93 -0.41 0.40 16 21 C -0.14 -1.16 4.28 -24.17 -0.10 -1.26 16 22 C 0.09 0.79 5.70 -23.77 -0.14 0.66 16 23 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 24 O -0.36 -4.39 10.79 -35.23 -0.38 -4.77 16 25 C 0.12 1.19 4.59 -23.73 -0.11 1.08 16 26 H 0.14 1.47 7.75 -51.93 -0.40 1.07 16 27 C -0.20 -1.52 6.63 -88.06 -0.58 -2.11 16 28 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 29 C -0.13 -0.96 9.80 -26.73 -0.26 -1.22 16 30 C -0.20 -1.44 6.62 -88.11 -0.58 -2.02 16 31 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 32 C 0.10 1.01 5.67 -3.49 -0.02 0.99 16 33 C -0.13 -1.64 4.83 -26.39 -0.13 -1.76 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.75 6.46 -51.93 -0.34 0.41 16 36 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 37 H 0.36 7.76 3.90 -40.82 -0.16 7.60 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.91 6.51 -51.93 -0.34 0.57 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.86 6.89 -51.93 -0.36 0.50 16 45 H 0.09 0.59 7.56 -51.93 -0.39 0.20 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.85 7.65 -51.93 -0.40 0.46 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 0.71 4.42 -51.93 -0.23 0.48 16 50 H 0.07 0.92 6.13 -51.93 -0.32 0.60 16 51 H 0.08 1.07 6.46 -51.93 -0.34 0.73 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -33.25 377.15 -10.15 -43.39 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.19 Total: 8.76 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.64 Total: -8.58 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.01 Total: -52.62 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.29 Total: -13.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.25 -10.15 -43.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.588 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds