Wall clock time and date at job start Tue Mar 31 2020 20:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47610 * 2 1 4 4 N 1.46501 * 109.46678 * 239.99562 * 2 1 3 5 5 C 1.36943 * 119.99471 * 85.00877 * 4 2 1 6 6 H 1.07991 * 120.00341 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99691 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00196 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00213 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47156 * 90.00250 * 9 7 5 11 11 H 1.48498 * 109.47244 * 210.00556 * 9 7 5 12 12 H 1.48502 * 109.47153 * 330.00183 * 9 7 5 13 13 C 1.53004 * 109.47257 * 120.00578 * 2 1 3 14 14 C 1.53044 * 109.45521 * 299.99715 * 13 2 1 15 15 C 1.53193 * 109.31242 * 181.38633 * 14 13 2 16 16 N 1.46924 * 108.77315 * 305.36186 * 15 14 13 17 17 C 1.34777 * 120.62823 * 233.58402 * 16 15 14 18 18 O 1.21281 * 120.00085 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99715 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.66451 * 61.76922 * 19 17 16 21 21 C 1.54997 * 110.74894 * 298.54826 * 19 17 16 22 22 C 1.55825 * 102.95067 * 241.40148 * 21 19 17 23 23 H 1.09001 * 115.38413 * 158.93026 * 22 21 19 24 24 O 1.47031 * 101.01878 * 32.42536 * 22 21 19 25 25 C 1.46537 * 99.71197 * 305.84765 * 24 22 21 26 26 H 1.09004 * 116.25800 * 180.02562 * 25 24 22 27 27 C 1.55810 * 101.24898 * 305.86885 * 25 24 22 28 28 H 1.09003 * 118.19708 * 171.69659 * 27 25 24 29 29 C 1.53004 * 117.23998 * 330.27853 * 27 25 24 30 30 C 1.52998 * 60.86701 * 89.21836 * 29 27 25 31 31 H 1.08995 * 120.22481 * 113.05940 * 30 29 27 32 32 C 1.46922 * 118.73760 * 53.86318 * 16 15 14 33 33 C 1.53040 * 109.46082 * 60.05701 * 13 2 1 34 34 H 1.09001 * 109.47219 * 59.99569 * 1 2 3 35 35 H 1.08998 * 109.47610 * 180.02562 * 1 2 3 36 36 H 1.09005 * 109.46854 * 300.00158 * 1 2 3 37 37 H 0.96995 * 120.00916 * 264.99805 * 4 2 1 38 38 H 0.96994 * 120.00489 * 179.97438 * 8 7 5 39 39 H 1.08996 * 109.44999 * 180.02562 * 13 2 1 40 40 H 1.08999 * 109.50239 * 61.43111 * 14 13 2 41 41 H 1.09002 * 109.49545 * 301.33597 * 14 13 2 42 42 H 1.09005 * 109.58493 * 185.57420 * 15 14 13 43 43 H 1.09001 * 109.58787 * 65.14968 * 15 14 13 44 44 H 1.09002 * 110.75082 * 359.81926 * 21 19 17 45 45 H 1.08999 * 110.75046 * 122.98702 * 21 19 17 46 46 H 1.08995 * 117.41254 * 196.95409 * 29 27 25 47 47 H 1.09001 * 117.40750 * 341.48131 * 29 27 25 48 48 H 1.08994 * 109.59128 * 65.92619 * 32 16 15 49 49 H 1.09004 * 109.58494 * 186.35094 * 32 16 15 50 50 H 1.08995 * 109.50344 * 298.57049 * 33 13 2 51 51 H 1.09006 * 109.49215 * 58.63832 * 33 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6112 -0.6621 -3.5093 8 7 2.7365 -0.0056 -4.6432 9 14 3.0552 -2.4746 -3.4255 10 1 1.8577 -3.2928 -3.7444 11 1 4.1302 -2.7668 -4.4074 12 1 3.5307 -2.8050 -2.0580 13 6 2.0400 -0.7214 1.2492 14 6 1.5298 0.0003 2.4986 15 6 2.0706 -0.7041 3.7469 16 7 1.7085 -2.1265 3.6815 17 6 1.0558 -2.7166 4.7024 18 8 0.7615 -2.0725 5.6871 19 6 0.6908 -4.1764 4.6200 20 1 1.5861 -4.7928 4.5385 21 6 -0.2657 -4.4369 3.4286 22 6 -1.5482 -4.9849 4.1236 23 1 -2.4661 -4.9036 3.5416 24 8 -1.5128 -4.2513 5.3974 25 6 -0.1648 -4.6059 5.8495 26 1 0.1487 -4.1876 6.8060 27 6 -0.2228 -6.1617 5.7876 28 1 0.7016 -6.7182 5.9425 29 6 -1.5842 -6.8214 6.0166 30 6 -1.1794 -6.4223 4.5961 31 1 -0.9973 -7.1878 3.8420 32 6 2.0768 -2.8949 2.4846 33 6 1.5309 -2.1646 1.2481 34 1 -0.3634 0.5139 -0.8899 35 1 -0.3634 -1.0276 0.0005 36 1 -0.3633 0.5139 0.8900 37 1 2.2489 -1.6318 -1.1527 38 1 3.0597 -0.4629 -5.4352 39 1 3.1300 -0.7208 1.2490 40 1 0.4401 -0.0216 2.5119 41 1 1.8732 1.0347 2.4870 42 1 1.6317 -0.2559 4.6384 43 1 3.1555 -0.6044 3.7816 44 1 -0.4809 -3.5103 2.8964 45 1 0.1544 -5.1807 2.7515 46 1 -1.5927 -7.8847 6.2559 47 1 -2.3549 -6.2250 6.5050 48 1 3.1621 -2.9703 2.4184 49 1 1.6420 -3.8927 2.5429 50 1 0.4413 -2.1662 1.2732 51 1 1.8749 -2.6710 0.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267489798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:21 Heat of formation + Delta-G solvation = -33.913545 kcal Electronic energy + Delta-G solvation = -30581.316486 eV Core-core repulsion = 26674.651156 eV Total energy + Delta-G solvation = -3906.665330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.69847 -40.96549 -39.25654 -36.95817 -35.31937 -34.74627 -33.66560 -32.48167 -31.76092 -30.47864 -30.15276 -26.89046 -25.87471 -24.93147 -24.25165 -23.61707 -22.49263 -21.43091 -20.99292 -20.71363 -19.86425 -19.32734 -18.31263 -17.87504 -17.18759 -16.80593 -16.60334 -16.28249 -16.07648 -15.52764 -15.30587 -15.27138 -14.99328 -14.54493 -14.36108 -14.26253 -14.24731 -14.01102 -13.62119 -13.38151 -13.15241 -13.06163 -12.95292 -12.81271 -12.80268 -12.70950 -12.42666 -12.25387 -12.17856 -12.04811 -11.82641 -11.80531 -11.64771 -11.35080 -11.25130 -11.11437 -11.00675 -10.91549 -10.63051 -10.60173 -9.66513 -9.27079 -7.98394 -5.31280 1.38308 1.44405 1.51674 1.57297 1.93707 2.52374 2.62763 2.73027 3.30884 3.33044 3.48181 3.56265 3.58320 3.71893 3.78046 3.84652 3.89066 3.93603 4.08487 4.14803 4.17108 4.20687 4.26024 4.36531 4.42795 4.54032 4.58616 4.63103 4.63835 4.69993 4.77379 4.83135 4.84087 4.88221 4.88998 4.94011 4.96600 4.98393 5.08018 5.09010 5.12423 5.22071 5.31781 5.33003 5.38848 5.52703 5.57516 5.68408 5.82045 6.25865 6.39496 7.13166 7.13650 7.89528 8.10102 9.23722 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.003080 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.215323 B = 9089.021129 C =10003.524895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 H 0.036 0.964 4 N -0.747 5.747 5 C -0.226 4.226 6 H 0.050 0.950 7 C -0.071 4.071 8 N -0.990 5.990 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.301 1.301 12 H -0.242 1.242 13 C -0.083 4.083 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.604 5.604 17 C 0.521 3.479 18 O -0.583 6.583 19 C -0.127 4.127 20 H 0.138 0.862 21 C -0.131 4.131 22 C 0.079 3.921 23 H 0.141 0.859 24 O -0.400 6.400 25 C 0.107 3.893 26 H 0.120 0.880 27 C -0.195 4.195 28 H 0.145 0.855 29 C -0.137 4.137 30 C -0.186 4.186 31 H 0.147 0.853 32 C 0.104 3.896 33 C -0.129 4.129 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.367 0.633 38 H 0.256 0.744 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.072 0.928 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -17.026 22.721 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.054 0.946 4 N -0.392 5.392 5 C -0.357 4.357 6 H 0.068 0.932 7 C -0.262 4.262 8 N -0.641 5.641 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.228 1.228 12 H -0.166 1.166 13 C -0.102 4.102 14 C -0.157 4.157 15 C -0.008 4.008 16 N -0.336 5.336 17 C 0.311 3.689 18 O -0.464 6.464 19 C -0.148 4.148 20 H 0.155 0.845 21 C -0.169 4.169 22 C 0.022 3.978 23 H 0.159 0.841 24 O -0.320 6.320 25 C 0.049 3.951 26 H 0.138 0.862 27 C -0.213 4.213 28 H 0.162 0.838 29 C -0.174 4.174 30 C -0.204 4.204 31 H 0.165 0.835 32 C -0.018 4.018 33 C -0.167 4.167 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.202 0.798 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.130 0.870 50 H 0.090 0.910 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.472 -16.336 23.197 28.722 hybrid contribution 0.413 -0.232 -0.867 0.988 sum -4.059 -16.568 22.330 28.100 Atomic orbital electron populations 1.22360 0.97956 1.01347 1.00051 1.20364 0.92586 0.94847 0.85300 0.94598 1.42794 1.79898 1.09726 1.06791 1.19019 1.34813 0.94270 0.87580 0.93215 1.25562 1.02561 1.02978 0.95067 1.69903 1.55001 1.37918 1.01253 0.85407 0.77638 0.80323 0.78445 1.20365 1.22764 1.16583 1.21286 1.00281 0.95316 0.93352 1.21903 1.01147 0.99727 0.92926 1.21586 1.00368 0.80347 0.98548 1.48157 1.56536 1.10919 1.17999 1.20862 0.76107 0.90104 0.81866 1.90666 1.55583 1.66734 1.33370 1.22936 1.01655 0.92344 0.97888 0.84475 1.23300 0.94347 1.02826 0.96377 1.24553 0.99150 0.88921 0.85192 0.84106 1.90199 1.33348 1.71429 1.37010 1.23990 0.81562 0.92680 0.96865 0.86230 1.24315 0.96821 0.94409 1.05781 0.83764 1.22868 0.96160 1.01384 0.96976 1.24361 1.05310 0.98324 0.92398 0.83532 1.22161 1.01243 0.95870 0.82531 1.22052 1.01580 0.95289 0.97761 0.95625 0.92497 0.91643 0.79804 0.93531 0.91052 0.91670 0.90008 0.90437 0.90278 0.90962 0.86268 0.85912 0.90142 0.89895 0.87003 0.90968 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 8.79 71.98 0.63 -4.52 16 2 C 0.18 6.18 2.72 44.99 0.12 6.30 16 3 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 4 N -0.75 -32.55 4.85 -322.94 -1.56 -34.11 16 5 C -0.23 -12.55 10.41 84.03 0.87 -11.67 16 6 H 0.05 3.09 8.06 -2.92 -0.02 3.07 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 8 N -0.99 -63.16 13.97 21.65 0.30 -62.85 16 9 Si 0.96 43.37 27.74 68.60 1.90 45.27 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.24 -9.42 6.52 99.48 0.65 -8.77 16 13 C -0.08 -2.14 2.14 -10.76 -0.02 -2.17 16 14 C -0.12 -2.67 4.96 30.67 0.15 -2.52 16 15 C 0.11 2.45 6.43 86.36 0.56 3.01 16 16 N -0.60 -12.32 2.95 -818.06 -2.41 -14.73 16 17 C 0.52 12.14 6.95 87.66 0.61 12.75 16 18 O -0.58 -18.60 15.32 -3.03 -0.05 -18.64 16 19 C -0.13 -2.03 1.95 -9.88 -0.02 -2.05 16 20 H 0.14 1.40 7.91 -2.39 -0.02 1.38 16 21 C -0.13 -1.77 4.28 32.25 0.14 -1.64 16 22 C 0.08 1.22 5.70 32.51 0.19 1.40 16 23 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 24 O -0.40 -9.51 10.79 -148.98 -1.61 -11.11 16 25 C 0.11 2.02 4.59 32.54 0.15 2.17 16 26 H 0.12 2.60 7.75 -2.39 -0.02 2.58 16 27 C -0.20 -2.41 6.63 -9.14 -0.06 -2.47 16 28 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 29 C -0.14 -1.69 9.80 30.59 0.30 -1.39 16 30 C -0.19 -2.08 6.62 -9.17 -0.06 -2.14 16 31 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 32 C 0.10 1.69 5.67 86.51 0.49 2.18 16 33 C -0.13 -2.80 4.83 30.82 0.15 -2.65 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.74 6.46 -2.39 -0.02 1.72 16 36 H 0.06 1.81 6.46 -2.38 -0.02 1.80 16 37 H 0.37 14.85 3.90 -92.71 -0.36 14.48 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.56 6.51 -2.39 -0.02 1.55 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.91 7.01 -2.38 -0.02 1.89 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.22 6.89 -2.39 -0.02 1.20 16 45 H 0.12 0.91 7.56 -2.39 -0.02 0.89 16 46 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.08 1.33 7.65 -2.39 -0.02 1.31 16 48 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.11 1.27 4.42 -2.39 -0.01 1.26 16 50 H 0.07 1.59 6.13 -2.39 -0.01 1.58 16 51 H 0.07 1.68 6.46 -2.38 -0.02 1.66 16 Total: -1.00 -75.90 377.15 1.75 -74.14 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.52 Total: 31.07 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.66 Total: -9.04 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.68 Total: -111.70 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.65 Total: -29.75 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.90 Total: 45.27 kcal Total: -75.90 1.75 -74.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.231 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds