Wall clock time and date at job start Tue Mar 31 2020 17:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 115.56543 * 2 1 4 4 C 1.53077 * 117.49324 * 145.71213 * 2 1 3 5 5 C 1.52999 * 59.98621 * 107.48459 * 4 2 1 6 6 H 1.09002 * 117.49802 * 252.50299 * 5 4 2 7 7 C 1.50697 * 117.50133 * 107.50057 * 5 4 2 8 8 O 1.21281 * 119.99993 * 291.25464 * 7 5 4 9 9 N 1.34781 * 119.99761 * 111.52548 * 7 5 4 10 10 C 1.46837 * 120.38027 * 359.45597 * 9 7 5 11 11 C 1.53836 * 108.55523 * 123.06435 * 10 9 7 12 12 C 1.53181 * 108.70993 * 51.52693 * 11 10 9 13 13 C 1.52843 * 117.66109 * 89.89861 * 12 11 10 14 14 C 1.52824 * 117.71599 * 158.75850 * 12 11 10 15 15 H 1.08997 * 117.49492 * 359.85843 * 14 12 11 16 16 C 1.50695 * 117.50334 * 144.90035 * 14 12 11 17 17 O 1.21279 * 120.00306 * 96.04885 * 16 14 12 18 18 N 1.34778 * 119.99762 * 276.04737 * 16 14 12 19 19 C 1.46507 * 120.00020 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47119 * 180.02562 * 19 18 16 21 21 C 1.50700 * 109.47183 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99996 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00131 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00103 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47079 * 60.00296 * 25 23 21 27 27 H 1.48499 * 109.46858 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47147 * 299.99894 * 25 23 21 29 29 C 1.53190 * 115.07647 * 304.42234 * 12 11 10 30 30 C 1.46843 * 120.37964 * 179.72408 * 9 7 5 31 31 H 1.08998 * 109.47323 * 205.69157 * 1 2 3 32 32 H 1.09004 * 109.46604 * 325.68894 * 1 2 3 33 33 H 1.08997 * 109.47627 * 85.68706 * 1 2 3 34 34 H 1.09000 * 117.49568 * 359.97438 * 4 2 1 35 35 H 1.08999 * 117.51340 * 214.95809 * 4 2 1 36 36 H 1.09000 * 109.58106 * 242.89834 * 10 9 7 37 37 H 1.09003 * 109.58238 * 3.29807 * 10 9 7 38 38 H 1.09005 * 109.72393 * 291.69738 * 11 10 9 39 39 H 1.08996 * 109.63110 * 171.29873 * 11 10 9 40 40 H 1.09002 * 117.50671 * 215.18718 * 13 12 11 41 41 H 1.09005 * 117.50227 * 0.23711 * 13 12 11 42 42 H 0.97005 * 120.00375 * 0.02562 * 18 16 14 43 43 H 1.08997 * 109.46749 * 300.00377 * 19 18 16 44 44 H 1.09002 * 109.46672 * 59.99951 * 19 18 16 45 45 H 1.09001 * 109.46818 * 299.99992 * 20 19 18 46 46 H 1.08998 * 109.47522 * 59.99801 * 20 19 18 47 47 H 0.97001 * 120.00480 * 179.97438 * 24 23 21 48 48 H 1.08996 * 109.59172 * 295.66236 * 29 12 11 49 49 H 1.09007 * 109.58621 * 175.22742 * 29 12 11 50 50 H 1.09003 * 109.58031 * 356.70481 * 30 9 7 51 51 H 1.08996 * 109.57786 * 116.97039 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 0.7650 5 6 2.2364 -1.1211 -0.7650 6 1 1.6111 -1.8583 -1.2686 7 6 3.5292 -0.7812 -1.4609 8 8 3.9709 0.3468 -1.4026 9 7 4.1917 -1.7295 -2.1526 10 6 3.6675 -3.0993 -2.2236 11 6 3.4826 -3.4765 -3.7035 12 6 4.7880 -3.1875 -4.4511 13 6 5.8241 -4.3085 -4.5291 14 6 5.0256 -3.9151 -5.7739 15 1 4.2531 -4.6043 -6.1149 16 6 5.7538 -3.1653 -6.8595 17 8 6.9493 -3.3122 -7.0009 18 7 5.0764 -2.3315 -7.6733 19 6 5.7841 -1.6029 -8.7291 20 6 4.7911 -0.7324 -9.5018 21 6 5.5192 0.0174 -10.5874 22 1 6.5838 -0.1141 -10.7139 23 6 4.8263 0.8705 -11.4198 24 7 3.5300 1.0303 -11.2662 25 14 5.7288 1.7995 -12.7660 26 1 6.3655 0.8310 -13.6943 27 1 4.7648 2.6435 -13.5166 28 1 6.7734 2.6619 -12.1574 29 6 5.3033 -1.7503 -4.3261 30 6 5.4489 -1.4061 -2.8388 31 1 -0.3634 -0.9260 0.4455 32 1 -0.3633 0.8489 0.5793 33 1 -0.3634 0.0773 -1.0247 34 1 1.6112 -1.8593 1.2683 35 1 3.1719 -0.8767 1.2682 36 1 4.3728 -3.7851 -1.7543 37 1 2.7079 -3.1504 -1.7091 38 1 2.6754 -2.8852 -4.1358 39 1 3.2425 -4.5367 -3.7840 40 1 6.8761 -4.0249 -4.4954 41 1 5.5769 -5.2566 -4.0513 42 1 4.1202 -2.2136 -7.5600 43 1 6.5508 -0.9699 -8.2824 44 1 6.2515 -2.3139 -9.4104 45 1 4.0242 -1.3653 -9.9483 46 1 4.3240 -0.0216 -8.8202 47 1 3.0425 1.6308 -11.8516 48 1 4.5943 -1.0660 -4.7918 49 1 6.2728 -1.6657 -4.8173 50 1 5.6619 -0.3427 -2.7292 51 1 6.2620 -1.9881 -2.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269525752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:30 Heat of formation + Delta-G solvation = -61.436027 kcal Electronic energy + Delta-G solvation = -28847.124062 eV Core-core repulsion = 24939.265268 eV Total energy + Delta-G solvation = -3907.858795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74992 -40.94647 -39.22095 -37.71813 -36.70004 -36.24440 -34.82905 -32.47292 -31.72292 -30.92726 -29.49175 -27.21861 -26.01044 -24.86423 -24.56541 -23.61956 -22.75465 -21.79435 -21.19237 -20.53565 -19.38487 -18.64352 -18.37890 -17.91530 -17.15650 -16.71072 -16.60801 -16.45363 -16.36357 -15.71607 -15.60405 -15.16769 -14.96862 -14.87070 -14.55577 -14.33066 -14.20488 -14.08879 -14.00152 -13.62874 -13.30101 -13.25511 -13.03104 -12.95902 -12.85137 -12.70606 -12.57034 -12.29657 -12.28100 -12.22722 -11.82572 -11.69288 -11.52406 -11.32598 -11.18067 -11.05966 -10.90600 -10.79511 -10.68180 -10.63741 -10.04967 -9.64704 -8.27563 -6.38588 1.38557 1.41101 1.43391 1.49110 1.56441 1.93907 2.20329 2.41483 2.69290 2.86016 3.06912 3.41890 3.53054 3.65754 3.74322 3.79320 3.83406 3.88641 4.02637 4.08045 4.15326 4.25179 4.42094 4.43499 4.45641 4.48281 4.51458 4.59100 4.69063 4.73154 4.79217 4.80259 4.87506 4.90152 4.93710 4.95239 4.97919 5.06544 5.10278 5.20080 5.24203 5.25975 5.32303 5.43130 5.45656 5.52495 5.52816 5.74440 6.12079 6.38513 6.61294 6.74267 7.13144 7.26787 7.30852 8.84123 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.002457 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.299512 B =11392.302015 C =13006.596555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.193 4.193 6 H 0.155 0.845 7 C 0.532 3.468 8 O -0.597 6.597 9 N -0.603 5.603 10 C 0.106 3.894 11 C -0.093 4.093 12 C -0.092 4.092 13 C -0.124 4.124 14 C -0.187 4.187 15 H 0.158 0.842 16 C 0.533 3.467 17 O -0.593 6.593 18 N -0.714 5.714 19 C 0.141 3.859 20 C 0.026 3.974 21 C -0.550 4.550 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.926 5.926 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.270 1.270 29 C -0.098 4.098 30 C 0.122 3.878 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.141 0.859 42 H 0.409 0.591 43 H 0.041 0.959 44 H 0.046 0.954 45 H 0.009 0.991 46 H 0.004 0.996 47 H 0.267 0.733 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.065 0.935 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 -13.958 26.847 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.214 4.214 6 H 0.173 0.827 7 C 0.323 3.677 8 O -0.478 6.478 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.131 4.131 12 C -0.093 4.093 13 C -0.161 4.161 14 C -0.207 4.207 15 H 0.175 0.825 16 C 0.321 3.679 17 O -0.475 6.475 18 N -0.364 5.364 19 C 0.017 3.983 20 C -0.012 4.012 21 C -0.588 4.588 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.565 5.565 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.204 1.204 28 H -0.195 1.195 29 C -0.136 4.136 30 C -0.001 4.001 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.159 0.841 42 H 0.244 0.756 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.023 0.977 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.084 0.916 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.085 -13.389 26.676 30.677 hybrid contribution 0.455 1.244 -1.513 2.011 sum -6.630 -12.144 25.163 28.716 Atomic orbital electron populations 1.21385 0.90313 1.03456 1.02374 1.22414 0.96639 0.94114 1.02560 0.89735 1.23205 1.02718 1.01122 0.89471 1.22400 0.96223 1.06130 0.96641 0.82735 1.20439 0.85515 0.83726 0.78065 1.90674 1.70101 1.23214 1.63809 1.48091 1.23578 1.11586 1.50186 1.22203 1.01918 0.80565 0.96776 1.21742 0.93330 1.04135 0.93876 1.21512 0.99174 0.92381 0.96213 1.23190 0.96667 0.99965 0.96314 1.22423 1.05311 1.04639 0.88348 0.82467 1.20449 0.86799 0.78577 0.82059 1.90648 1.17095 1.66520 1.73196 1.46149 1.12779 1.44256 1.33167 1.21194 0.95288 0.93671 0.88138 1.19096 0.94156 0.93759 0.94176 1.21438 0.95185 1.26117 1.16077 0.92396 1.25881 0.95711 0.97510 1.00041 1.70048 1.08402 1.38072 1.40009 0.85502 0.78318 0.78549 0.78723 1.19156 1.20408 1.19481 1.21451 1.00441 0.95365 0.96365 1.21388 0.86386 1.01366 0.91003 0.90144 0.91513 0.92261 0.84411 0.89552 0.88856 0.86445 0.90981 0.86559 0.89982 0.84081 0.75582 0.94086 0.93559 0.97237 0.97724 0.92469 0.92751 0.92802 0.91607 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.19 71.98 0.73 -0.44 16 2 C -0.14 -2.08 5.92 -10.77 -0.06 -2.15 16 3 H 0.08 1.82 7.67 -2.39 -0.02 1.80 16 4 C -0.13 -1.35 9.88 30.62 0.30 -1.05 16 5 C -0.19 -2.69 4.78 -11.54 -0.06 -2.75 16 6 H 0.16 1.19 6.62 -2.39 -0.02 1.17 16 7 C 0.53 12.10 7.47 87.66 0.66 12.76 16 8 O -0.60 -19.81 15.64 -3.03 -0.05 -19.86 16 9 N -0.60 -11.04 2.91 -817.78 -2.38 -13.42 16 10 C 0.11 0.94 6.38 86.60 0.55 1.49 16 11 C -0.09 -0.91 5.85 30.94 0.18 -0.73 16 12 C -0.09 -1.59 1.94 -52.17 -0.10 -1.70 16 13 C -0.12 -2.10 9.45 30.55 0.29 -1.81 16 14 C -0.19 -3.94 5.90 -11.59 -0.07 -4.00 16 15 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 16 C 0.53 17.80 6.09 87.66 0.53 18.33 16 17 O -0.59 -24.93 16.61 -3.03 -0.05 -24.98 16 18 N -0.71 -25.42 5.56 -463.06 -2.57 -27.99 16 19 C 0.14 6.29 5.61 86.38 0.48 6.77 16 20 C 0.03 1.33 5.09 29.85 0.15 1.48 16 21 C -0.55 -31.49 9.11 25.60 0.23 -31.25 16 22 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 23 C 0.01 0.43 5.46 84.65 0.46 0.89 16 24 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 25 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 29 C -0.10 -2.38 5.23 30.77 0.16 -2.22 16 30 C 0.12 2.72 6.44 86.43 0.56 3.28 16 31 H 0.08 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.14 0.56 8.05 -2.39 -0.02 0.54 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.12 0.44 5.48 -2.39 -0.01 0.42 16 38 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.12 0.43 8.10 -2.39 -0.02 0.41 16 40 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 41 H 0.14 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.41 12.73 8.47 -92.70 -0.79 11.95 16 43 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.05 1.59 7.36 -2.38 -0.02 1.57 16 50 H 0.07 1.86 6.96 -2.39 -0.02 1.84 16 51 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -79.89 412.10 2.40 -77.50 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.13 Total: 20.32 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.01 Total: -3.09 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.67 Total: -96.36 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.10 Total: -44.83 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -79.89 2.40 -77.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269525752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.060 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds