Wall clock time and date at job start Tue Mar 31 2020 20:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 116.99760 * 2 1 4 4 C 1.38737 * 120.05171 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.72436 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 H 1.09000 * 109.47050 * 55.00357 * 8 7 6 10 10 C 1.52995 * 109.47160 * 295.00250 * 8 7 6 11 11 C 1.50704 * 109.47181 * 174.99806 * 8 7 6 12 12 O 1.21283 * 119.99580 * 0.02562 * 11 8 7 13 13 N 1.34772 * 119.99666 * 179.97438 * 11 8 7 14 14 C 1.46505 * 119.99455 * 180.02562 * 13 11 8 15 15 C 1.52998 * 109.46970 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.47305 * 54.99743 * 15 14 13 17 17 C 1.52995 * 109.47323 * 294.99860 * 15 14 13 18 18 C 1.53002 * 109.47312 * 174.99408 * 15 14 13 19 19 N 1.46502 * 109.47177 * 184.99915 * 18 15 14 20 20 C 1.36939 * 119.99926 * 180.02562 * 19 18 15 21 21 H 1.08002 * 119.99901 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00035 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99951 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00089 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47022 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47551 * 119.99878 * 24 22 20 27 27 H 1.48497 * 109.47017 * 240.00227 * 24 22 20 28 28 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 29 29 C 1.38149 * 120.05738 * 0.02562 * 28 6 5 30 30 H 1.09000 * 109.46735 * 300.00022 * 1 2 3 31 31 H 1.09002 * 109.46782 * 59.99823 * 1 2 3 32 32 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.03050 * 359.95719 * 4 3 2 34 34 H 1.08005 * 119.97610 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 36 36 H 1.09003 * 109.46732 * 329.99369 * 7 6 5 37 37 H 1.09005 * 109.46887 * 300.00324 * 10 8 7 38 38 H 1.09000 * 109.47310 * 59.99760 * 10 8 7 39 39 H 1.09001 * 109.47064 * 180.02562 * 10 8 7 40 40 H 0.96992 * 120.00475 * 0.02562 * 13 11 8 41 41 H 1.09004 * 109.47084 * 299.99831 * 14 13 11 42 42 H 1.08996 * 109.47561 * 59.99944 * 14 13 11 43 43 H 1.08999 * 109.47742 * 179.97438 * 17 15 14 44 44 H 1.09000 * 109.47163 * 299.99843 * 17 15 14 45 45 H 1.09004 * 109.46965 * 60.00128 * 17 15 14 46 46 H 1.08997 * 109.47418 * 305.00028 * 18 15 14 47 47 H 1.09004 * 109.46521 * 65.00374 * 18 15 14 48 48 H 0.96995 * 119.99945 * 0.02562 * 19 18 15 49 49 H 0.96995 * 120.00167 * 180.02562 * 23 22 20 50 50 H 1.08005 * 119.97210 * 179.97438 * 28 6 5 51 51 H 1.07998 * 120.03168 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 0.0052 8 6 4.2225 5.4767 -1.4353 9 1 3.2769 5.4731 -1.9775 10 6 5.2057 4.5243 -2.1186 11 6 4.7940 6.8712 -1.4316 12 8 4.9931 7.4420 -0.3802 13 7 5.0847 7.4833 -2.5966 14 6 5.6408 8.8387 -2.5929 15 6 5.8769 9.2969 -4.0334 16 1 4.9495 9.2092 -4.5993 17 6 6.9524 8.4200 -4.6777 18 6 6.3394 10.7554 -4.0354 19 7 6.4507 11.2305 -5.4167 20 6 6.8516 12.5155 -5.6686 21 1 7.0853 13.1788 -4.8488 22 6 6.9566 12.9659 -6.9774 23 7 6.6713 12.1577 -7.9763 24 14 7.5041 14.7185 -7.3209 25 1 7.7632 15.4170 -6.0363 26 1 8.7468 14.6986 -8.1336 27 1 6.4368 15.4334 -8.0659 28 6 1.9211 3.6048 0.0000 29 6 1.2915 2.3751 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0209 0.3799 -0.0003 34 1 5.1346 2.5750 -0.0011 35 1 3.3564 5.7449 0.5188 36 1 4.9424 4.9368 0.5220 37 1 6.1513 4.5279 -1.5764 38 1 4.7924 3.5157 -2.1213 39 1 5.3744 4.8510 -3.1448 40 1 4.9258 7.0266 -3.4373 41 1 4.9403 9.5175 -2.1063 42 1 6.5862 8.8421 -2.0505 43 1 7.1204 8.7461 -5.7041 44 1 7.8799 8.5078 -4.1119 45 1 6.6228 7.3810 -4.6764 46 1 5.6147 11.3671 -3.4980 47 1 7.3108 10.8291 -3.5464 48 1 6.2405 10.6350 -6.1529 49 1 6.7450 12.4723 -8.8909 50 1 1.3342 4.5114 0.0008 51 1 0.2129 2.3201 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270602365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:27 Heat of formation + Delta-G solvation = -61.849347 kcal Electronic energy + Delta-G solvation = -27604.423029 eV Core-core repulsion = 23696.546312 eV Total energy + Delta-G solvation = -3907.876718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.65168 -39.94682 -38.18459 -36.86521 -34.79958 -34.36852 -32.48589 -31.53465 -30.66427 -29.90104 -28.14115 -26.58948 -26.43176 -25.44205 -23.68487 -22.88698 -22.26125 -21.21002 -20.32868 -19.51130 -18.53329 -17.48291 -16.90512 -16.62428 -16.18460 -16.10398 -15.58241 -15.49493 -14.89377 -14.67481 -14.57738 -14.17149 -14.05498 -13.88690 -13.69774 -13.50624 -13.26562 -12.96436 -12.81811 -12.56959 -12.44899 -12.36871 -12.23502 -12.03167 -11.77145 -11.60816 -11.36663 -11.15691 -11.06157 -11.05726 -10.92133 -10.70699 -10.56510 -10.41063 -10.03871 -9.78522 -9.63709 -9.34392 -9.00611 -8.88451 -8.43026 -6.92457 -5.77599 -3.05871 0.98001 1.04674 2.62659 2.86441 3.14721 3.42142 3.43273 3.49360 3.51353 4.38401 4.42420 4.50201 4.58743 4.59234 4.64336 4.69149 4.73449 4.86072 4.99310 5.01845 5.04539 5.07436 5.18491 5.22782 5.25882 5.38225 5.46131 5.50288 5.57120 5.57755 5.69802 5.81737 5.87055 5.89454 5.94343 5.96851 5.99907 6.01241 6.11532 6.24852 6.33746 6.39077 6.40455 6.50667 6.64977 6.77251 6.86743 6.99233 7.50328 7.70813 8.21349 8.41598 9.52993 10.10333 10.45147 11.45488 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.001538 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.852058 B =18203.256467 C =18439.019832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.150 4.150 5 C -0.075 4.075 6 C -0.114 4.114 7 C -0.057 4.057 8 C -0.105 4.105 9 H 0.097 0.903 10 C -0.147 4.147 11 C 0.514 3.486 12 O -0.544 6.544 13 N -0.724 5.724 14 C 0.126 3.874 15 C -0.110 4.110 16 H 0.076 0.924 17 C -0.141 4.141 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.076 4.076 29 C -0.206 4.206 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.125 0.875 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -26.499 16.199 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.095 4.095 8 C -0.126 4.126 9 H 0.115 0.885 10 C -0.205 4.205 11 C 0.300 3.700 12 O -0.421 6.421 13 N -0.375 5.375 14 C 0.002 3.998 15 C -0.130 4.130 16 H 0.094 0.906 17 C -0.198 4.198 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.094 4.094 29 C -0.225 4.225 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.143 0.857 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.837 -26.083 16.986 32.959 hybrid contribution -0.202 0.724 -1.027 1.272 sum -11.038 -25.359 15.959 31.931 Atomic orbital electron populations 1.23055 0.78361 1.03944 1.01410 1.86066 1.21416 1.27071 1.88800 1.19057 0.92428 0.84121 0.96894 1.20434 0.91346 0.98699 1.06425 1.20921 0.99945 0.90890 0.97498 1.19805 0.93477 0.95194 1.02942 1.20341 1.01460 0.92815 0.94898 1.21286 1.00659 0.92204 0.98500 0.88510 1.21871 0.98811 0.99446 1.00369 1.20596 0.77894 0.87760 0.83753 1.90701 1.53285 1.66925 1.31186 1.46091 1.65198 1.17642 1.08609 1.21412 0.98858 0.82005 0.97501 1.21550 0.99879 0.97462 0.94065 0.90590 1.21786 0.98215 0.97560 1.02274 1.20578 0.97455 0.89892 0.88861 1.42344 1.81750 1.12476 1.00962 1.19295 1.36999 0.88784 0.91865 0.91092 1.24731 1.02561 0.98182 0.95560 1.69665 1.55522 1.34943 0.98189 0.86111 0.77860 0.84427 0.77778 1.20532 1.21879 1.21893 1.20884 0.94040 0.97082 0.97369 1.21226 1.00002 0.92349 1.08879 0.92644 0.92594 0.88258 0.85259 0.85194 0.90104 0.90229 0.91941 0.91053 0.92010 0.76534 0.91437 0.91398 0.91179 0.92831 0.93930 0.96150 0.96005 0.78224 0.93596 0.85686 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.63 10.50 -19.42 -0.20 -2.84 16 3 C 0.12 1.02 6.69 -39.22 -0.26 0.76 16 4 C -0.15 -1.21 9.99 -39.43 -0.39 -1.61 16 5 C -0.07 -0.56 7.95 -39.61 -0.32 -0.88 16 6 C -0.11 -0.91 4.71 -104.60 -0.49 -1.41 16 7 C -0.06 -0.50 4.19 -27.88 -0.12 -0.62 16 8 C -0.11 -0.90 2.71 -91.77 -0.25 -1.14 16 9 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.15 -1.06 8.65 37.16 0.32 -0.73 16 11 C 0.51 6.15 7.15 -10.99 -0.08 6.07 16 12 O -0.54 -8.61 15.92 5.56 0.09 -8.53 16 13 N -0.72 -8.19 5.18 -60.29 -0.31 -8.50 16 14 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 15 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 16 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.14 -2.05 8.94 37.15 0.33 -1.72 16 18 C 0.16 3.18 5.65 -4.04 -0.02 3.15 16 19 N -0.73 -18.26 5.33 -59.90 -0.32 -18.58 16 20 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 C -0.08 -0.59 9.69 -39.60 -0.38 -0.97 16 29 C -0.21 -1.57 9.04 -39.43 -0.36 -1.92 16 30 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.79 8.03 -52.48 -0.42 0.37 16 35 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.47 6.27 -51.93 -0.33 0.14 16 39 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 40 H 0.40 3.68 7.07 -40.82 -0.29 3.39 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 51 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -33.58 412.33 -8.95 -42.53 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.61 Total: 7.08 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.52 Total: -7.45 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.09 Total: -54.43 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.12 Total: -11.36 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.58 -8.95 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270602365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.318 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds