Wall clock time and date at job start Tue Mar 31 2020 20:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 116.99760 * 2 1 4 4 C 1.38737 * 120.05171 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.72436 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 H 1.09000 * 109.47050 * 55.00357 * 8 7 6 10 10 C 1.52995 * 109.47160 * 295.00250 * 8 7 6 11 11 C 1.50704 * 109.47181 * 174.99806 * 8 7 6 12 12 O 1.21283 * 119.99580 * 0.02562 * 11 8 7 13 13 N 1.34772 * 119.99666 * 179.97438 * 11 8 7 14 14 C 1.46505 * 119.99455 * 180.02562 * 13 11 8 15 15 C 1.52998 * 109.46970 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.47305 * 54.99743 * 15 14 13 17 17 C 1.52995 * 109.47323 * 294.99860 * 15 14 13 18 18 C 1.53002 * 109.47312 * 174.99408 * 15 14 13 19 19 N 1.46502 * 109.47177 * 184.99915 * 18 15 14 20 20 C 1.36939 * 119.99926 * 180.02562 * 19 18 15 21 21 H 1.08002 * 119.99901 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00035 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99951 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00089 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47022 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47551 * 119.99878 * 24 22 20 27 27 H 1.48497 * 109.47017 * 240.00227 * 24 22 20 28 28 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 29 29 C 1.38149 * 120.05738 * 0.02562 * 28 6 5 30 30 H 1.09000 * 109.46735 * 300.00022 * 1 2 3 31 31 H 1.09002 * 109.46782 * 59.99823 * 1 2 3 32 32 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.03050 * 359.95719 * 4 3 2 34 34 H 1.08005 * 119.97610 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 36 36 H 1.09003 * 109.46732 * 329.99369 * 7 6 5 37 37 H 1.09005 * 109.46887 * 300.00324 * 10 8 7 38 38 H 1.09000 * 109.47310 * 59.99760 * 10 8 7 39 39 H 1.09001 * 109.47064 * 180.02562 * 10 8 7 40 40 H 0.96992 * 120.00475 * 0.02562 * 13 11 8 41 41 H 1.09004 * 109.47084 * 299.99831 * 14 13 11 42 42 H 1.08996 * 109.47561 * 59.99944 * 14 13 11 43 43 H 1.08999 * 109.47742 * 179.97438 * 17 15 14 44 44 H 1.09000 * 109.47163 * 299.99843 * 17 15 14 45 45 H 1.09004 * 109.46965 * 60.00128 * 17 15 14 46 46 H 1.08997 * 109.47418 * 305.00028 * 18 15 14 47 47 H 1.09004 * 109.46521 * 65.00374 * 18 15 14 48 48 H 0.96995 * 119.99945 * 0.02562 * 19 18 15 49 49 H 0.96995 * 120.00167 * 180.02562 * 23 22 20 50 50 H 1.08005 * 119.97210 * 179.97438 * 28 6 5 51 51 H 1.07998 * 120.03168 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 0.0052 8 6 4.2225 5.4767 -1.4353 9 1 3.2769 5.4731 -1.9775 10 6 5.2057 4.5243 -2.1186 11 6 4.7940 6.8712 -1.4316 12 8 4.9931 7.4420 -0.3802 13 7 5.0847 7.4833 -2.5966 14 6 5.6408 8.8387 -2.5929 15 6 5.8769 9.2969 -4.0334 16 1 4.9495 9.2092 -4.5993 17 6 6.9524 8.4200 -4.6777 18 6 6.3394 10.7554 -4.0354 19 7 6.4507 11.2305 -5.4167 20 6 6.8516 12.5155 -5.6686 21 1 7.0853 13.1788 -4.8488 22 6 6.9566 12.9659 -6.9774 23 7 6.6713 12.1577 -7.9763 24 14 7.5041 14.7185 -7.3209 25 1 7.7632 15.4170 -6.0363 26 1 8.7468 14.6986 -8.1336 27 1 6.4368 15.4334 -8.0659 28 6 1.9211 3.6048 0.0000 29 6 1.2915 2.3751 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0209 0.3799 -0.0003 34 1 5.1346 2.5750 -0.0011 35 1 3.3564 5.7449 0.5188 36 1 4.9424 4.9368 0.5220 37 1 6.1513 4.5279 -1.5764 38 1 4.7924 3.5157 -2.1213 39 1 5.3744 4.8510 -3.1448 40 1 4.9258 7.0266 -3.4373 41 1 4.9403 9.5175 -2.1063 42 1 6.5862 8.8421 -2.0505 43 1 7.1204 8.7461 -5.7041 44 1 7.8799 8.5078 -4.1119 45 1 6.6228 7.3810 -4.6764 46 1 5.6147 11.3671 -3.4980 47 1 7.3108 10.8291 -3.5464 48 1 6.2405 10.6350 -6.1529 49 1 6.7450 12.4723 -8.8909 50 1 1.3342 4.5114 0.0008 51 1 0.2129 2.3201 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270602365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:26 Heat of formation + Delta-G solvation = -82.534460 kcal Electronic energy + Delta-G solvation = -27605.320003 eV Core-core repulsion = 23696.546312 eV Total energy + Delta-G solvation = -3908.773691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.30988 -40.79372 -38.82822 -38.19062 -35.95776 -35.53549 -34.04941 -32.13104 -31.93341 -31.05049 -28.58874 -27.77870 -27.14213 -26.96756 -24.86135 -23.86696 -23.30560 -21.92932 -21.49803 -20.59186 -19.17915 -19.05267 -18.09199 -17.30470 -17.18606 -16.62580 -16.55955 -16.47532 -16.16101 -15.86277 -15.47898 -15.34230 -15.08254 -14.93651 -14.57947 -14.52640 -14.26240 -14.06821 -13.91756 -13.56869 -13.48988 -13.27124 -13.02837 -12.94975 -12.82880 -12.78424 -12.36861 -12.24288 -12.15059 -12.11199 -12.00995 -11.97455 -11.72786 -11.67588 -11.63093 -11.62372 -10.95430 -10.73679 -10.05335 -9.90801 -9.01229 -8.99130 -7.95683 -5.23782 0.41992 0.45394 1.48064 1.48163 1.58521 1.68075 2.20951 2.41747 2.56863 2.81592 3.38312 3.65950 3.74346 3.84803 3.94628 3.96975 3.98815 4.07223 4.09249 4.22901 4.31490 4.35213 4.39753 4.44796 4.51395 4.53303 4.56282 4.68696 4.72440 4.75702 4.80058 4.87715 4.92029 4.94880 4.99192 5.05961 5.13521 5.13776 5.23217 5.32737 5.34985 5.36316 5.43484 5.44071 5.50316 5.51701 5.74469 5.85996 6.27275 6.47580 6.59078 7.28315 7.34197 8.09332 8.33776 9.27921 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.001538 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.852058 B =18203.256467 C =18439.019832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.107 3.893 4 C -0.162 4.162 5 C -0.075 4.075 6 C -0.119 4.119 7 C -0.051 4.051 8 C -0.095 4.095 9 H 0.113 0.887 10 C -0.145 4.145 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.714 5.714 14 C 0.138 3.862 15 C -0.094 4.094 16 H 0.078 0.922 17 C -0.135 4.135 18 C 0.156 3.844 19 N -0.741 5.741 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.972 3.028 25 H -0.268 1.268 26 H -0.292 1.292 27 H -0.293 1.293 28 C -0.082 4.082 29 C -0.210 4.210 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.019 0.981 47 H 0.020 0.980 48 H 0.377 0.623 49 H 0.251 0.749 50 H 0.135 0.865 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 -27.531 16.489 34.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.062 3.938 4 C -0.181 4.181 5 C -0.093 4.093 6 C -0.119 4.119 7 C -0.089 4.089 8 C -0.117 4.117 9 H 0.131 0.869 10 C -0.202 4.202 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.366 5.366 14 C 0.013 3.987 15 C -0.113 4.113 16 H 0.096 0.904 17 C -0.192 4.192 18 C 0.029 3.971 19 N -0.384 5.384 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.193 1.193 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.100 4.100 29 C -0.228 4.228 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.250 0.750 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.153 0.847 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.419 -27.137 17.293 34.144 hybrid contribution -0.066 0.993 -1.040 1.440 sum -11.485 -26.144 16.252 32.856 Atomic orbital electron populations 1.23303 0.76682 1.05403 1.02128 1.86041 1.23276 1.27139 1.88805 1.19285 0.92850 0.84583 0.97070 1.20635 0.91599 0.99210 1.06649 1.21061 1.00632 0.90558 0.97006 1.19763 0.93689 0.94824 1.03657 1.20239 1.00884 0.92966 0.94843 1.21272 1.01491 0.90052 0.98835 0.86866 1.21873 0.98210 0.99473 1.00633 1.21198 0.76976 0.88711 0.82976 1.90688 1.55042 1.68143 1.32661 1.45957 1.64675 1.16667 1.09341 1.21107 0.98532 0.83182 0.95858 1.21330 1.00022 0.94677 0.95272 0.90363 1.21720 0.97977 0.99292 1.00238 1.20732 0.97371 0.92791 0.86201 1.42506 1.81522 1.11625 1.02761 1.19673 1.36085 0.90056 0.92068 0.90884 1.25522 1.03448 1.02058 0.95495 1.69806 1.57038 1.36670 0.98286 0.85095 0.77033 0.79973 0.77787 1.19261 1.21948 1.21969 1.21070 0.94128 0.97646 0.97183 1.21421 1.00930 0.91982 1.08488 0.91896 0.91845 0.86561 0.84573 0.83934 0.91322 0.91005 0.92280 0.90131 0.90982 0.74964 0.92354 0.91967 0.93945 0.93024 0.90465 0.96340 0.96155 0.79072 0.93970 0.84676 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.22 10.50 -92.42 -0.97 -6.19 16 3 C 0.11 1.71 6.69 22.51 0.15 1.86 16 4 C -0.16 -2.45 9.99 22.37 0.22 -2.22 16 5 C -0.07 -1.03 7.95 22.25 0.18 -0.85 16 6 C -0.12 -1.75 4.71 -19.85 -0.09 -1.85 16 7 C -0.05 -0.85 4.19 29.85 0.12 -0.72 16 8 C -0.10 -1.45 2.71 -11.54 -0.03 -1.48 16 9 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 10 C -0.14 -1.72 8.65 71.98 0.62 -1.09 16 11 C 0.51 11.58 7.15 87.66 0.63 12.21 16 12 O -0.59 -18.29 15.92 -3.04 -0.05 -18.34 16 13 N -0.71 -14.79 5.18 -463.05 -2.40 -17.18 16 14 C 0.14 3.60 5.06 86.38 0.44 4.04 16 15 C -0.09 -2.76 2.46 -10.80 -0.03 -2.79 16 16 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 17 C -0.13 -3.74 8.94 71.98 0.64 -3.10 16 18 C 0.16 6.15 5.65 86.38 0.49 6.64 16 19 N -0.74 -37.21 5.33 -343.44 -1.83 -39.04 16 20 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 23 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 24 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 C -0.08 -1.16 9.69 22.26 0.22 -0.94 16 29 C -0.21 -2.89 9.04 22.37 0.20 -2.69 16 30 H 0.06 0.37 7.66 -2.39 -0.02 0.36 16 31 H 0.06 0.38 7.66 -2.39 -0.02 0.36 16 32 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.14 1.51 8.03 -2.91 -0.02 1.48 16 35 H 0.07 1.29 7.90 -2.39 -0.02 1.27 16 36 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.08 0.85 6.27 -2.39 -0.01 0.83 16 39 H 0.07 0.72 7.56 -2.39 -0.02 0.70 16 40 H 0.41 6.42 7.07 -92.71 -0.66 5.77 16 41 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.04 1.43 7.18 -2.39 -0.02 1.41 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.59 7.18 -2.38 -0.02 1.57 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.38 19.78 6.85 -92.71 -0.64 19.15 16 49 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 51 H 0.14 1.38 6.30 -2.91 -0.02 1.36 16 Total: -1.00 -72.04 412.33 2.88 -69.17 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.37 Total: 30.21 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 6.18 Total: -8.46 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -3.94 Total: -114.57 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.02 Total: -24.54 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.04 2.88 -69.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270602365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.366 kcal (2) G-P(sol) polarization free energy of solvation -72.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds