Wall clock time and date at job start Tue Mar 31 2020 20:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00200 * 2 1 4 4 C 1.38731 * 120.05417 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94280 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05400 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94046 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47359 * 89.99782 * 7 6 5 9 9 H 1.09004 * 109.46867 * 304.99529 * 8 7 6 10 10 C 1.52998 * 109.47380 * 64.99494 * 8 7 6 11 11 C 1.50700 * 109.47165 * 184.99766 * 8 7 6 12 12 O 1.21282 * 119.99977 * 359.97438 * 11 8 7 13 13 N 1.34771 * 120.00222 * 179.97438 * 11 8 7 14 14 C 1.46500 * 120.00026 * 179.97438 * 13 11 8 15 15 C 1.53004 * 109.47129 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47217 * 305.00580 * 15 14 13 17 17 C 1.53008 * 109.46816 * 65.00299 * 15 14 13 18 18 C 1.52996 * 109.47336 * 184.99981 * 15 14 13 19 19 N 1.46498 * 109.47059 * 175.00083 * 18 15 14 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.38257 * 120.11201 * 0.24532 * 6 5 4 29 29 C 1.38150 * 120.05825 * 359.45667 * 28 6 5 30 30 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46654 * 299.99790 * 1 2 3 32 32 H 1.08995 * 109.47459 * 59.99806 * 1 2 3 33 33 H 1.07997 * 120.03033 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.97096 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47072 * 329.99118 * 7 6 5 36 36 H 1.08998 * 109.46504 * 209.99555 * 7 6 5 37 37 H 1.09004 * 109.47093 * 60.00172 * 10 8 7 38 38 H 1.08996 * 109.47638 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.47421 * 300.00417 * 10 8 7 40 40 H 0.97004 * 119.99945 * 359.97438 * 13 11 8 41 41 H 1.09005 * 109.47000 * 60.00500 * 14 13 11 42 42 H 1.08996 * 109.47381 * 300.00104 * 14 13 11 43 43 H 1.09001 * 109.46930 * 299.99894 * 17 15 14 44 44 H 1.09000 * 109.46973 * 59.99593 * 17 15 14 45 45 H 1.08995 * 109.47053 * 180.02562 * 17 15 14 46 46 H 1.09004 * 109.47066 * 55.00351 * 18 15 14 47 47 H 1.08994 * 109.46974 * 295.00498 * 18 15 14 48 48 H 0.97001 * 120.00384 * 0.02562 * 19 18 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.07998 * 119.97371 * 179.71068 * 28 6 5 51 51 H 1.07994 * 120.03396 * 180.29455 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.2172 5.4744 -1.4393 9 1 4.7698 4.7056 -1.9793 10 6 2.8684 5.7081 -2.1226 11 6 5.0094 6.7564 -1.4400 12 8 5.3548 7.2564 -0.3904 13 7 5.3341 7.3473 -2.6069 14 6 6.1038 8.5938 -2.6075 15 6 6.3360 9.0492 -4.0497 16 1 6.8102 8.2452 -4.6126 17 6 4.9944 9.4015 -4.6955 18 6 7.2440 10.2806 -4.0558 19 7 7.5632 10.6450 -5.4384 20 6 8.3630 11.7268 -5.6940 21 1 8.7619 12.3086 -4.8763 22 6 8.6608 12.0756 -7.0042 23 7 8.1741 11.3667 -8.0007 24 14 9.7523 13.5508 -7.3529 25 1 11.1708 13.1149 -7.4087 26 1 9.3683 14.1541 -8.6544 27 1 9.5855 14.5563 -6.2729 28 6 1.9212 3.6047 0.0078 29 6 1.2915 2.3751 0.0011 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 4.0208 0.3798 -0.0005 34 1 5.1346 2.5749 0.0000 35 1 4.9443 4.9375 0.5162 36 1 3.3584 5.7456 0.5176 37 1 2.3158 6.4770 -1.5825 38 1 3.0329 6.0334 -3.1498 39 1 2.2954 4.7809 -2.1221 40 1 5.0582 6.9473 -3.4464 41 1 7.0646 8.4278 -2.1202 42 1 5.5507 9.3627 -2.0680 43 1 4.3476 8.5242 -4.6911 44 1 4.5202 10.2054 -4.1325 45 1 5.1598 9.7254 -5.7230 46 1 8.1647 10.0558 -3.5174 47 1 6.7326 11.1114 -3.5698 48 1 7.2046 10.1226 -6.1728 49 1 8.3826 11.6102 -8.9162 50 1 1.3343 4.5113 0.0138 51 1 0.2130 2.3201 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270602367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:31 Heat of formation + Delta-G solvation = -61.728331 kcal Electronic energy + Delta-G solvation = -27610.687176 eV Core-core repulsion = 23702.815707 eV Total energy + Delta-G solvation = -3907.871470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.65354 -39.94628 -38.18280 -36.86408 -34.80925 -34.36596 -32.48291 -31.46060 -30.75741 -29.91610 -28.03225 -26.61924 -26.52754 -25.42694 -23.54036 -22.98306 -22.29329 -21.19361 -20.32528 -19.51052 -18.53601 -17.47661 -16.87958 -16.63304 -16.19172 -16.10674 -15.62597 -15.48306 -14.93037 -14.65032 -14.48838 -14.21968 -14.06824 -13.80873 -13.77687 -13.51944 -13.25389 -12.96042 -12.81891 -12.56743 -12.44085 -12.37814 -12.24347 -12.03004 -11.75745 -11.64906 -11.34753 -11.15710 -11.06682 -11.05315 -10.90885 -10.70374 -10.55999 -10.41527 -10.06715 -9.78471 -9.63487 -9.34207 -9.00499 -8.87572 -8.42962 -6.92234 -5.77198 -3.05503 0.98154 1.04587 2.62720 2.86401 3.14712 3.42229 3.43981 3.49340 3.50836 4.37840 4.42255 4.49969 4.59491 4.60472 4.62771 4.68671 4.72594 4.86076 4.99025 5.01568 5.04281 5.06367 5.18761 5.23303 5.28401 5.38237 5.44282 5.49279 5.55510 5.57925 5.70954 5.81833 5.86864 5.87449 5.95069 5.96771 5.99778 6.01270 6.11698 6.24845 6.33827 6.39169 6.40644 6.50793 6.64953 6.77438 6.86918 6.99310 7.50356 7.70561 8.21410 8.42015 9.53306 10.10652 10.45469 11.45802 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.001536 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.739551 B =18228.886016 C =18505.082740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.149 4.149 5 C -0.076 4.076 6 C -0.114 4.114 7 C -0.057 4.057 8 C -0.105 4.105 9 H 0.098 0.902 10 C -0.147 4.147 11 C 0.514 3.486 12 O -0.544 6.544 13 N -0.724 5.724 14 C 0.126 3.874 15 C -0.110 4.110 16 H 0.076 0.924 17 C -0.141 4.141 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.074 4.074 29 C -0.207 4.207 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.125 0.875 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.644 -23.113 16.232 33.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.114 4.114 7 C -0.095 4.095 8 C -0.127 4.127 9 H 0.116 0.884 10 C -0.204 4.204 11 C 0.300 3.700 12 O -0.421 6.421 13 N -0.375 5.375 14 C 0.002 3.998 15 C -0.130 4.130 16 H 0.094 0.906 17 C -0.198 4.198 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.092 4.092 29 C -0.226 4.226 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.143 0.857 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.207 -22.769 17.008 33.224 hybrid contribution 0.094 0.574 -1.014 1.169 sum -17.114 -22.195 15.994 32.270 Atomic orbital electron populations 1.23050 0.78379 1.03943 1.01386 1.86067 1.21400 1.27080 1.88800 1.19055 0.92418 0.84127 0.96899 1.20432 0.91354 0.98708 1.06308 1.20920 1.00006 0.90932 0.97531 1.19805 0.93524 0.95151 1.02945 1.20339 1.01487 0.92808 0.94878 1.21286 0.97372 0.95507 0.98494 0.88421 1.21862 0.95453 1.02753 1.00372 1.20591 0.79712 0.85959 0.83737 1.90701 1.54563 1.65450 1.31376 1.46092 1.56529 1.26333 1.08585 1.21413 0.95784 0.85090 0.97488 1.21552 0.97586 0.99779 0.94042 0.90571 1.21787 0.95537 1.00234 1.02273 1.20575 0.94760 0.92600 0.88846 1.42337 1.59698 1.34538 1.00949 1.19249 1.21801 1.04152 0.91825 0.91153 1.24730 1.01184 0.99525 0.95558 1.69659 1.49170 1.41246 0.98253 0.86179 0.80314 0.82355 0.77293 1.21727 1.21786 1.20755 1.20882 0.94006 0.97004 0.97322 1.21228 0.99977 0.92361 1.08995 0.88265 0.92663 0.92600 0.85251 0.85207 0.90020 0.90318 0.92009 0.92005 0.91142 0.76535 0.91418 0.91415 0.93943 0.92846 0.91177 0.96141 0.96027 0.78220 0.93551 0.85672 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.63 10.50 -19.43 -0.20 -2.84 16 3 C 0.12 1.02 6.69 -39.22 -0.26 0.76 16 4 C -0.15 -1.23 9.99 -39.43 -0.39 -1.63 16 5 C -0.08 -0.60 9.69 -39.60 -0.38 -0.98 16 6 C -0.11 -0.91 4.71 -104.60 -0.49 -1.41 16 7 C -0.06 -0.50 4.19 -27.88 -0.12 -0.62 16 8 C -0.11 -0.90 2.71 -91.77 -0.25 -1.15 16 9 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 10 C -0.15 -1.05 8.67 37.16 0.32 -0.73 16 11 C 0.51 6.15 7.15 -10.99 -0.08 6.08 16 12 O -0.54 -8.61 15.92 5.56 0.09 -8.53 16 13 N -0.72 -8.19 5.18 -60.29 -0.31 -8.50 16 14 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 15 C -0.11 -1.68 2.46 -90.62 -0.22 -1.91 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 17 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 18 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 19 N -0.73 -18.27 5.33 -59.91 -0.32 -18.59 16 20 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.07 -0.55 7.97 -39.61 -0.32 -0.87 16 29 C -0.21 -1.53 9.04 -39.43 -0.36 -1.89 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.41 7.57 -51.93 -0.39 0.01 16 39 H 0.07 0.46 6.28 -51.93 -0.33 0.13 16 40 H 0.40 3.68 7.07 -40.82 -0.29 3.39 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.38 9.97 6.85 -40.82 -0.28 9.69 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.13 0.76 8.05 -52.49 -0.42 0.34 16 51 H 0.13 0.69 6.30 -52.49 -0.33 0.36 16 LS Contribution 412.40 15.07 6.21 6.21 Total: -1.00 -33.56 412.40 -8.96 -42.52 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.61 Total: 7.09 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.52 Total: -7.44 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.09 Total: -54.44 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.12 Total: -11.36 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.56 -8.96 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270602367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.211 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds