Wall clock time and date at job start Tue Mar 31 2020 20:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00200 * 2 1 4 4 C 1.38731 * 120.05417 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94280 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05400 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94046 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47359 * 89.99782 * 7 6 5 9 9 H 1.09004 * 109.46867 * 304.99529 * 8 7 6 10 10 C 1.52998 * 109.47380 * 64.99494 * 8 7 6 11 11 C 1.50700 * 109.47165 * 184.99766 * 8 7 6 12 12 O 1.21282 * 119.99977 * 359.97438 * 11 8 7 13 13 N 1.34771 * 120.00222 * 179.97438 * 11 8 7 14 14 C 1.46500 * 120.00026 * 179.97438 * 13 11 8 15 15 C 1.53004 * 109.47129 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47217 * 305.00580 * 15 14 13 17 17 C 1.53008 * 109.46816 * 65.00299 * 15 14 13 18 18 C 1.52996 * 109.47336 * 184.99981 * 15 14 13 19 19 N 1.46498 * 109.47059 * 175.00083 * 18 15 14 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.38257 * 120.11201 * 0.24532 * 6 5 4 29 29 C 1.38150 * 120.05825 * 359.45667 * 28 6 5 30 30 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46654 * 299.99790 * 1 2 3 32 32 H 1.08995 * 109.47459 * 59.99806 * 1 2 3 33 33 H 1.07997 * 120.03033 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.97096 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47072 * 329.99118 * 7 6 5 36 36 H 1.08998 * 109.46504 * 209.99555 * 7 6 5 37 37 H 1.09004 * 109.47093 * 60.00172 * 10 8 7 38 38 H 1.08996 * 109.47638 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.47421 * 300.00417 * 10 8 7 40 40 H 0.97004 * 119.99945 * 359.97438 * 13 11 8 41 41 H 1.09005 * 109.47000 * 60.00500 * 14 13 11 42 42 H 1.08996 * 109.47381 * 300.00104 * 14 13 11 43 43 H 1.09001 * 109.46930 * 299.99894 * 17 15 14 44 44 H 1.09000 * 109.46973 * 59.99593 * 17 15 14 45 45 H 1.08995 * 109.47053 * 180.02562 * 17 15 14 46 46 H 1.09004 * 109.47066 * 55.00351 * 18 15 14 47 47 H 1.08994 * 109.46974 * 295.00498 * 18 15 14 48 48 H 0.97001 * 120.00384 * 0.02562 * 19 18 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.07998 * 119.97371 * 179.71068 * 28 6 5 51 51 H 1.07994 * 120.03396 * 180.29455 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.2172 5.4744 -1.4393 9 1 4.7698 4.7056 -1.9793 10 6 2.8684 5.7081 -2.1226 11 6 5.0094 6.7564 -1.4400 12 8 5.3548 7.2564 -0.3904 13 7 5.3341 7.3473 -2.6069 14 6 6.1038 8.5938 -2.6075 15 6 6.3360 9.0492 -4.0497 16 1 6.8102 8.2452 -4.6126 17 6 4.9944 9.4015 -4.6955 18 6 7.2440 10.2806 -4.0558 19 7 7.5632 10.6450 -5.4384 20 6 8.3630 11.7268 -5.6940 21 1 8.7619 12.3086 -4.8763 22 6 8.6608 12.0756 -7.0042 23 7 8.1741 11.3667 -8.0007 24 14 9.7523 13.5508 -7.3529 25 1 11.1708 13.1149 -7.4087 26 1 9.3683 14.1541 -8.6544 27 1 9.5855 14.5563 -6.2729 28 6 1.9212 3.6047 0.0078 29 6 1.2915 2.3751 0.0011 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 4.0208 0.3798 -0.0005 34 1 5.1346 2.5749 0.0000 35 1 4.9443 4.9375 0.5162 36 1 3.3584 5.7456 0.5176 37 1 2.3158 6.4770 -1.5825 38 1 3.0329 6.0334 -3.1498 39 1 2.2954 4.7809 -2.1221 40 1 5.0582 6.9473 -3.4464 41 1 7.0646 8.4278 -2.1202 42 1 5.5507 9.3627 -2.0680 43 1 4.3476 8.5242 -4.6911 44 1 4.5202 10.2054 -4.1325 45 1 5.1598 9.7254 -5.7230 46 1 8.1647 10.0558 -3.5174 47 1 6.7326 11.1114 -3.5698 48 1 7.2046 10.1226 -6.1728 49 1 8.3826 11.6102 -8.9162 50 1 1.3343 4.5113 0.0138 51 1 0.2130 2.3201 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270602367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:30 Heat of formation + Delta-G solvation = -82.419032 kcal Electronic energy + Delta-G solvation = -27611.584393 eV Core-core repulsion = 23702.815707 eV Total energy + Delta-G solvation = -3908.768686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.31049 -40.79300 -38.82510 -38.18976 -35.95554 -35.54385 -34.04840 -32.04445 -31.96039 -31.13634 -28.47850 -27.76756 -27.20396 -27.03265 -24.80721 -23.66878 -23.52916 -21.91995 -21.49330 -20.58718 -19.17631 -19.05188 -18.08533 -17.29360 -17.17655 -16.62272 -16.57348 -16.47782 -16.19565 -15.85865 -15.47766 -15.28695 -15.17578 -14.77826 -14.60806 -14.57260 -14.30535 -14.06405 -13.89134 -13.56677 -13.48909 -13.26472 -13.04684 -12.94513 -12.80506 -12.77478 -12.33007 -12.28591 -12.16942 -12.14959 -11.99351 -11.96697 -11.72784 -11.67552 -11.63405 -11.61695 -10.94118 -10.73872 -10.05311 -9.90876 -9.01012 -8.98971 -7.95342 -5.23503 0.42054 0.45503 1.48076 1.49318 1.57849 1.68127 2.20957 2.42028 2.57158 2.81672 3.38475 3.65899 3.74389 3.84666 3.95934 3.96810 3.98317 4.07856 4.09142 4.22813 4.30829 4.35356 4.40657 4.45208 4.50626 4.53669 4.56491 4.70245 4.72478 4.76762 4.79692 4.86008 4.91737 4.94806 4.98324 5.05832 5.13641 5.15212 5.22125 5.32057 5.34748 5.36605 5.43452 5.44057 5.50151 5.51700 5.74557 5.86131 6.27415 6.48136 6.59057 7.28340 7.34378 8.09559 8.34028 9.28016 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.001536 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.739551 B =18228.886016 C =18505.082740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.107 3.893 4 C -0.164 4.164 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.051 4.051 8 C -0.096 4.096 9 H 0.114 0.886 10 C -0.144 4.144 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.714 5.714 14 C 0.138 3.862 15 C -0.094 4.094 16 H 0.078 0.922 17 C -0.135 4.135 18 C 0.156 3.844 19 N -0.741 5.741 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.271 1.271 28 C -0.076 4.076 29 C -0.209 4.209 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.041 0.959 46 H 0.019 0.981 47 H 0.020 0.980 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.139 0.861 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -23.833 16.510 34.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.062 3.938 4 C -0.182 4.182 5 C -0.099 4.099 6 C -0.119 4.119 7 C -0.089 4.089 8 C -0.117 4.117 9 H 0.132 0.868 10 C -0.201 4.201 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.366 5.366 14 C 0.013 3.987 15 C -0.113 4.113 16 H 0.096 0.904 17 C -0.192 4.192 18 C 0.029 3.971 19 N -0.384 5.384 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.196 1.196 28 C -0.094 4.094 29 C -0.227 4.227 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.157 0.843 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.402 -23.509 17.302 34.506 hybrid contribution 0.419 0.744 -1.022 1.331 sum -17.983 -22.765 16.281 33.267 Atomic orbital electron populations 1.23307 0.76621 1.05402 1.02199 1.86041 1.23339 1.27175 1.88803 1.19274 0.92740 0.84692 0.97055 1.20607 0.91750 0.99089 1.06767 1.21058 1.00604 0.90829 0.97367 1.19761 0.93883 0.94630 1.03674 1.20236 1.00762 0.93105 0.94823 1.21275 0.97842 0.93744 0.98835 0.86850 1.21861 0.94384 1.03228 1.00625 1.21196 0.79140 0.86566 0.82959 1.90688 1.56242 1.66756 1.32850 1.45959 1.55917 1.25449 1.09318 1.21107 0.95691 0.86035 0.95842 1.21332 0.97051 0.97677 0.95252 0.90365 1.21721 0.95562 1.01703 1.00227 1.20728 0.95600 0.94575 0.86183 1.42499 1.59306 1.33857 1.02747 1.19638 1.21604 1.04746 0.92054 0.90910 1.25524 1.03028 1.02437 0.95490 1.69803 1.50729 1.42911 0.98318 0.85159 0.78392 0.79318 0.77006 1.21420 1.22028 1.19629 1.21067 0.93878 0.97646 0.96790 1.21444 1.00979 0.91904 1.08405 0.86637 0.91827 0.91727 0.84820 0.84310 0.91310 0.91028 0.92305 0.90988 0.90162 0.74964 0.92368 0.91961 0.90457 0.93025 0.93948 0.96349 0.96180 0.79070 0.93968 0.84296 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.24 10.50 -92.44 -0.97 -6.21 16 3 C 0.11 1.72 6.69 22.51 0.15 1.87 16 4 C -0.16 -2.59 9.99 22.37 0.22 -2.36 16 5 C -0.08 -1.19 9.69 22.26 0.22 -0.98 16 6 C -0.12 -1.76 4.71 -19.85 -0.09 -1.85 16 7 C -0.05 -0.84 4.19 29.85 0.12 -0.72 16 8 C -0.10 -1.45 2.71 -11.54 -0.03 -1.49 16 9 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 10 C -0.14 -1.67 8.67 71.98 0.62 -1.05 16 11 C 0.51 11.60 7.15 87.66 0.63 12.22 16 12 O -0.59 -18.32 15.92 -3.04 -0.05 -18.36 16 13 N -0.71 -14.81 5.18 -463.06 -2.40 -17.21 16 14 C 0.14 3.61 5.06 86.38 0.44 4.05 16 15 C -0.09 -2.77 2.46 -10.79 -0.03 -2.80 16 16 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.13 -3.74 8.94 71.98 0.64 -3.09 16 18 C 0.16 6.17 5.65 86.38 0.49 6.65 16 19 N -0.74 -37.26 5.33 -343.46 -1.83 -39.09 16 20 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 21 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 23 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 24 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 C -0.08 -0.99 7.97 22.25 0.18 -0.82 16 29 C -0.21 -2.73 9.04 22.37 0.20 -2.52 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.35 7.66 -2.39 -0.02 0.33 16 32 H 0.06 0.35 7.66 -2.39 -0.02 0.33 16 33 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 36 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.07 0.70 7.57 -2.39 -0.02 0.69 16 39 H 0.08 0.82 6.28 -2.39 -0.01 0.80 16 40 H 0.41 6.43 7.07 -92.71 -0.66 5.78 16 41 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.58 7.18 -2.39 -0.02 1.57 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.04 1.43 7.18 -2.39 -0.02 1.41 16 46 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.38 19.80 6.85 -92.71 -0.63 19.17 16 49 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 50 H 0.14 1.38 8.05 -2.91 -0.02 1.35 16 51 H 0.15 1.24 6.30 -2.91 -0.02 1.23 16 Total: -1.00 -72.13 412.40 2.88 -69.26 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.37 Total: 30.20 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 6.18 Total: -8.44 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -3.95 Total: -114.62 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.02 Total: -24.58 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.13 2.88 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270602367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.160 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds