Wall clock time and date at job start Tue Mar 31 2020 19:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47453 * 329.37102 * 3 2 1 5 5 C 1.34784 * 120.00165 * 84.12803 * 4 3 2 6 6 O 1.21281 * 119.99749 * 3.57943 * 5 4 3 7 7 C 1.50700 * 119.99850 * 183.58169 * 5 4 3 8 8 H 1.08996 * 109.54523 * 313.60772 * 7 5 4 9 9 C 1.53174 * 109.61980 * 73.82352 * 7 5 4 10 10 C 1.53089 * 109.16468 * 176.87822 * 9 7 5 11 11 O 1.42904 * 109.42259 * 302.40420 * 10 9 7 12 12 C 1.42908 * 114.09364 * 61.15640 * 11 10 9 13 13 C 1.53091 * 109.41273 * 298.83554 * 12 11 10 14 14 H 1.08995 * 109.52465 * 297.64451 * 13 12 11 15 15 C 1.53004 * 109.52209 * 177.51674 * 13 12 11 16 16 C 1.46505 * 119.99947 * 264.13298 * 4 3 2 17 17 C 1.53033 * 109.46001 * 53.67025 * 16 4 3 18 18 C 1.53202 * 109.31002 * 178.60139 * 17 16 4 19 19 N 1.46927 * 108.76358 * 54.65581 * 18 17 16 20 20 C 1.36934 * 120.63194 * 126.40305 * 19 18 17 21 21 H 1.07998 * 119.99874 * 330.49982 * 20 19 18 22 22 C 1.38818 * 119.99792 * 150.49423 * 20 19 18 23 23 N 1.31612 * 120.00049 * 347.70763 * 22 20 19 24 24 Si 1.86798 * 119.99586 * 167.70738 * 22 20 19 25 25 H 1.48495 * 109.47368 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47138 * 120.00034 * 24 22 20 27 27 H 1.48503 * 109.46950 * 240.00151 * 24 22 20 28 28 C 1.46927 * 118.73737 * 306.38271 * 19 18 17 29 29 C 1.53036 * 109.45626 * 293.61153 * 16 4 3 30 30 H 4.40639 * 5.51257 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.46819 * 209.36651 * 3 2 1 32 32 H 1.09005 * 109.46918 * 89.37277 * 3 2 1 33 33 H 1.09000 * 109.51452 * 56.97476 * 9 7 5 34 34 H 1.08999 * 109.53149 * 296.78987 * 9 7 5 35 35 H 1.09004 * 109.47895 * 182.42072 * 10 9 7 36 36 H 1.08996 * 109.48196 * 62.39436 * 10 9 7 37 37 H 1.08990 * 109.48226 * 58.82174 * 12 11 10 38 38 H 1.09001 * 109.47859 * 178.84830 * 12 11 10 39 39 H 1.09001 * 109.46534 * 60.00165 * 15 13 12 40 40 H 1.08993 * 109.46887 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47219 * 300.00652 * 15 13 12 42 42 H 1.09003 * 109.45670 * 173.64585 * 16 4 3 43 43 H 1.08997 * 109.49811 * 298.56011 * 17 16 4 44 44 H 1.08999 * 109.49975 * 58.66700 * 17 16 4 45 45 H 1.08997 * 109.59939 * 294.86823 * 18 17 16 46 46 H 1.09002 * 109.69958 * 174.50370 * 18 17 16 47 47 H 0.97001 * 119.99861 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.58771 * 293.82201 * 28 19 18 49 49 H 1.08998 * 109.70555 * 173.46567 * 28 19 18 50 50 H 1.08997 * 109.50460 * 301.33788 * 29 16 4 51 51 H 1.09000 * 109.49855 * 61.43637 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1875 0.7036 5 6 3.2476 -2.3601 0.0485 6 8 3.0063 -2.4169 -1.1387 7 6 3.6732 -3.6003 0.7913 8 1 4.5351 -3.3721 1.4182 9 6 2.5192 -4.0964 1.6678 10 6 2.9353 -5.3985 2.3569 11 8 3.2979 -6.3645 1.3682 12 6 4.4027 -5.9750 0.5496 13 6 4.0454 -4.6961 -0.2123 14 1 3.1997 -4.8895 -0.8722 15 6 5.2481 -4.2424 -1.0421 16 6 3.5014 -1.1014 2.1195 17 6 2.3328 -0.5135 2.9137 18 6 2.7067 -0.4574 4.3984 19 7 3.9668 0.2846 4.5408 20 6 4.0550 1.3528 5.3930 21 1 3.1816 1.9546 5.5967 22 6 5.2669 1.6620 5.9952 23 7 6.2639 0.8043 5.9460 24 14 5.4826 3.2955 6.8752 25 1 4.2215 4.0748 6.7885 26 1 5.8146 3.0493 8.3015 27 1 6.5829 4.0608 6.2358 28 6 5.1306 -0.1415 3.7516 29 6 4.7295 -0.2015 2.2744 30 1 -1.0498 -0.0002 0.0003 31 1 3.0089 0.8964 0.5040 32 1 3.0093 -0.0104 -1.0277 33 1 1.6419 -4.2771 1.0468 34 1 2.2846 -3.3444 2.4213 35 1 2.1025 -5.7789 2.9485 36 1 3.7876 -5.2084 3.0092 37 1 5.2742 -5.7922 1.1781 38 1 4.6271 -6.7707 -0.1607 39 1 5.5157 -5.0251 -1.7520 40 1 4.9927 -3.3322 -1.5845 41 1 6.0927 -4.0472 -0.3812 42 1 3.7317 -2.0980 2.4962 43 1 2.1184 0.4929 2.5542 44 1 1.4519 -1.1422 2.7841 45 1 2.8334 -1.4697 4.7820 46 1 1.9193 0.0490 4.9566 47 1 7.1109 1.0205 6.3665 48 1 5.4550 -1.1282 4.0825 49 1 5.9437 0.5728 3.8808 50 1 5.5546 -0.6081 1.6896 51 1 4.4922 0.8019 1.9208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278183786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:47 Heat of formation + Delta-G solvation = -10.458203 kcal Electronic energy + Delta-G solvation = -31149.869859 eV Core-core repulsion = 27244.221629 eV Total energy + Delta-G solvation = -3905.648230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.85297 -38.94938 -37.68572 -35.47942 -34.45449 -33.24458 -32.39154 -31.96558 -30.21374 -29.58567 -28.07095 -26.74600 -25.56559 -24.92080 -22.54042 -22.27778 -22.21749 -20.84385 -19.45633 -19.16442 -17.93923 -17.30310 -16.92651 -16.26928 -16.09119 -15.54863 -15.41633 -14.91989 -14.73062 -14.44948 -14.26502 -13.90161 -13.72079 -13.59288 -13.30133 -13.10515 -12.85673 -12.81114 -12.51829 -12.43714 -12.22979 -11.99604 -11.67068 -11.56798 -11.15430 -11.11451 -10.94391 -10.83036 -10.73165 -10.57775 -10.53936 -10.40470 -10.28777 -10.22033 -10.05667 -9.94607 -9.86674 -9.69815 -9.28768 -8.68636 -8.47128 -6.76301 -5.87473 -3.33595 2.47149 2.70054 2.93945 3.31273 3.39812 3.41237 3.45977 3.75253 4.37248 4.41558 4.46292 4.50623 4.62159 4.77441 4.95153 5.08888 5.09357 5.28917 5.30736 5.33359 5.37513 5.39076 5.44731 5.45611 5.49474 5.53834 5.58832 5.62267 5.64834 5.74721 5.90779 5.92791 5.94597 5.99677 6.10918 6.19241 6.22535 6.26364 6.35547 6.42491 6.50607 6.63503 6.66596 6.83809 7.05099 7.23680 7.47380 7.58275 7.68394 7.71430 8.23166 8.37201 9.12760 9.74266 10.30332 11.20818 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003766 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.057883 B = 7432.237824 C = 8411.366577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.222 3.778 4 N -0.601 5.601 5 C 0.526 3.474 6 O -0.541 6.541 7 C -0.105 4.105 8 H 0.098 0.902 9 C -0.148 4.148 10 C 0.063 3.937 11 O -0.383 6.383 12 C 0.065 3.935 13 C -0.106 4.106 14 H 0.087 0.913 15 C -0.150 4.150 16 C 0.138 3.862 17 C -0.138 4.138 18 C 0.148 3.852 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.905 5.905 24 Si 0.903 3.097 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.173 3.827 29 C -0.151 4.151 30 H 0.214 0.786 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.057 0.943 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.095 0.905 50 H 0.053 0.947 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -9.268 -10.591 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.100 3.900 4 N -0.332 5.332 5 C 0.314 3.686 6 O -0.419 6.419 7 C -0.127 4.127 8 H 0.116 0.884 9 C -0.186 4.186 10 C -0.014 4.014 11 O -0.302 6.302 12 C -0.012 4.012 13 C -0.125 4.125 14 H 0.106 0.894 15 C -0.207 4.207 16 C 0.036 3.964 17 C -0.179 4.179 18 C 0.021 3.979 19 N -0.314 5.314 20 C -0.382 4.382 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.733 3.267 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.215 1.215 28 C 0.047 3.953 29 C -0.191 4.191 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.113 0.887 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.084 -9.443 -11.145 15.467 hybrid contribution 0.067 1.269 0.591 1.401 sum -5.017 -8.174 -10.554 14.261 Atomic orbital electron populations 1.24822 0.95825 0.99877 1.01449 1.23549 0.94883 1.00694 0.99830 1.18196 0.83612 0.89263 0.98944 1.48314 1.64124 1.08679 1.12079 1.20533 0.76541 0.84306 0.87221 1.90646 1.50453 1.85432 1.15349 1.21444 1.00131 0.93258 0.97834 0.88394 1.22247 0.97883 0.98781 0.99707 1.22587 1.00492 0.88227 0.90080 1.87924 1.51109 1.42952 1.48188 1.22698 0.88741 0.96320 0.93396 1.21588 1.00264 0.93968 0.96651 0.89443 1.21817 0.96634 1.02458 0.99772 1.21475 0.96031 1.00876 0.78056 1.22397 0.96082 1.00802 0.98570 1.20882 0.90211 0.95233 0.91611 1.44055 1.06716 1.33655 1.46965 1.19230 0.96200 1.03369 1.19422 0.91643 1.25095 0.97698 0.98281 0.98322 1.69966 1.03853 1.33929 1.47200 0.86206 0.77782 0.83508 0.79180 1.20248 1.21630 1.21542 1.20802 0.91221 0.99231 0.84071 1.22664 0.95552 0.98913 1.01986 0.76892 0.87702 0.88300 0.90604 0.89620 0.88415 0.92532 0.92898 0.88681 0.92484 0.91053 0.92812 0.89190 0.91717 0.92865 0.96345 0.92405 0.93577 0.96274 0.88665 0.92854 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.60 19.25 29.55 0.57 -2.03 16 2 C -0.19 -2.71 12.64 -37.13 -0.47 -3.17 16 3 C 0.22 3.08 5.05 -6.84 -0.03 3.05 16 4 N -0.60 -8.56 2.36 -169.38 -0.40 -8.96 16 5 C 0.53 7.68 6.32 -10.98 -0.07 7.61 16 6 O -0.54 -9.23 14.15 5.56 0.08 -9.15 16 7 C -0.11 -1.30 1.22 -91.59 -0.11 -1.41 16 8 H 0.10 1.19 6.97 -51.93 -0.36 0.82 16 9 C -0.15 -1.71 5.10 -26.60 -0.14 -1.84 16 10 C 0.06 0.66 6.84 37.20 0.25 0.92 16 11 O -0.38 -4.57 10.77 -35.23 -0.38 -4.95 16 12 C 0.07 0.67 6.13 37.20 0.23 0.90 16 13 C -0.11 -1.22 2.05 -90.48 -0.19 -1.40 16 14 H 0.09 1.15 7.86 -51.93 -0.41 0.75 16 15 C -0.15 -1.64 8.93 37.16 0.33 -1.30 16 16 C 0.14 2.06 1.65 -67.89 -0.11 1.95 16 17 C -0.14 -2.20 4.64 -26.61 -0.12 -2.32 16 18 C 0.15 2.81 6.52 -3.70 -0.02 2.78 16 19 N -0.59 -13.58 2.99 -172.31 -0.52 -14.10 16 20 C -0.25 -6.53 9.60 -15.06 -0.14 -6.67 16 21 H 0.07 1.68 7.86 -52.49 -0.41 1.27 16 22 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 23 N -0.90 -24.87 11.00 55.49 0.61 -24.26 16 24 Si 0.90 20.84 29.57 -169.99 -5.03 15.82 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.17 3.74 5.27 -3.71 -0.02 3.72 16 29 C -0.15 -2.56 5.42 -26.61 -0.14 -2.71 16 30 H 0.21 1.98 7.80 -54.10 -0.42 1.56 16 31 H 0.11 1.39 6.56 -51.93 -0.34 1.05 16 32 H 0.10 1.35 7.56 -51.93 -0.39 0.96 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.00 6.33 -51.93 -0.33 0.67 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.93 6.31 -51.93 -0.33 0.60 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.30 4.51 -51.93 -0.23 1.07 16 43 H 0.06 1.10 7.12 -51.93 -0.37 0.73 16 44 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 47 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 2.36 6.01 -51.93 -0.31 2.05 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -29.76 391.47 -8.48 -38.24 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.47 Total: 3.38 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.28 Total: -1.91 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.30 Total: -47.32 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.30 Total: -14.10 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.76 -8.48 -38.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278183786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.777 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds