Wall clock time and date at job start Tue Mar 31 2020 19:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47453 * 329.37102 * 3 2 1 5 5 C 1.34784 * 120.00165 * 84.12803 * 4 3 2 6 6 O 1.21281 * 119.99749 * 3.57943 * 5 4 3 7 7 C 1.50700 * 119.99850 * 183.58169 * 5 4 3 8 8 H 1.08996 * 109.54523 * 313.60772 * 7 5 4 9 9 C 1.53174 * 109.61980 * 73.82352 * 7 5 4 10 10 C 1.53089 * 109.16468 * 176.87822 * 9 7 5 11 11 O 1.42904 * 109.42259 * 302.40420 * 10 9 7 12 12 C 1.42908 * 114.09364 * 61.15640 * 11 10 9 13 13 C 1.53091 * 109.41273 * 298.83554 * 12 11 10 14 14 H 1.08995 * 109.52465 * 297.64451 * 13 12 11 15 15 C 1.53004 * 109.52209 * 177.51674 * 13 12 11 16 16 C 1.46505 * 119.99947 * 264.13298 * 4 3 2 17 17 C 1.53033 * 109.46001 * 53.67025 * 16 4 3 18 18 C 1.53202 * 109.31002 * 178.60139 * 17 16 4 19 19 N 1.46927 * 108.76358 * 54.65581 * 18 17 16 20 20 C 1.36934 * 120.63194 * 126.40305 * 19 18 17 21 21 H 1.07998 * 119.99874 * 330.49982 * 20 19 18 22 22 C 1.38818 * 119.99792 * 150.49423 * 20 19 18 23 23 N 1.31612 * 120.00049 * 347.70763 * 22 20 19 24 24 Si 1.86798 * 119.99586 * 167.70738 * 22 20 19 25 25 H 1.48495 * 109.47368 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47138 * 120.00034 * 24 22 20 27 27 H 1.48503 * 109.46950 * 240.00151 * 24 22 20 28 28 C 1.46927 * 118.73737 * 306.38271 * 19 18 17 29 29 C 1.53036 * 109.45626 * 293.61153 * 16 4 3 30 30 H 4.40639 * 5.51257 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.46819 * 209.36651 * 3 2 1 32 32 H 1.09005 * 109.46918 * 89.37277 * 3 2 1 33 33 H 1.09000 * 109.51452 * 56.97476 * 9 7 5 34 34 H 1.08999 * 109.53149 * 296.78987 * 9 7 5 35 35 H 1.09004 * 109.47895 * 182.42072 * 10 9 7 36 36 H 1.08996 * 109.48196 * 62.39436 * 10 9 7 37 37 H 1.08990 * 109.48226 * 58.82174 * 12 11 10 38 38 H 1.09001 * 109.47859 * 178.84830 * 12 11 10 39 39 H 1.09001 * 109.46534 * 60.00165 * 15 13 12 40 40 H 1.08993 * 109.46887 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47219 * 300.00652 * 15 13 12 42 42 H 1.09003 * 109.45670 * 173.64585 * 16 4 3 43 43 H 1.08997 * 109.49811 * 298.56011 * 17 16 4 44 44 H 1.08999 * 109.49975 * 58.66700 * 17 16 4 45 45 H 1.08997 * 109.59939 * 294.86823 * 18 17 16 46 46 H 1.09002 * 109.69958 * 174.50370 * 18 17 16 47 47 H 0.97001 * 119.99861 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.58771 * 293.82201 * 28 19 18 49 49 H 1.08998 * 109.70555 * 173.46567 * 28 19 18 50 50 H 1.08997 * 109.50460 * 301.33788 * 29 16 4 51 51 H 1.09000 * 109.49855 * 61.43637 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1875 0.7036 5 6 3.2476 -2.3601 0.0485 6 8 3.0063 -2.4169 -1.1387 7 6 3.6732 -3.6003 0.7913 8 1 4.5351 -3.3721 1.4182 9 6 2.5192 -4.0964 1.6678 10 6 2.9353 -5.3985 2.3569 11 8 3.2979 -6.3645 1.3682 12 6 4.4027 -5.9750 0.5496 13 6 4.0454 -4.6961 -0.2123 14 1 3.1997 -4.8895 -0.8722 15 6 5.2481 -4.2424 -1.0421 16 6 3.5014 -1.1014 2.1195 17 6 2.3328 -0.5135 2.9137 18 6 2.7067 -0.4574 4.3984 19 7 3.9668 0.2846 4.5408 20 6 4.0550 1.3528 5.3930 21 1 3.1816 1.9546 5.5967 22 6 5.2669 1.6620 5.9952 23 7 6.2639 0.8043 5.9460 24 14 5.4826 3.2955 6.8752 25 1 4.2215 4.0748 6.7885 26 1 5.8146 3.0493 8.3015 27 1 6.5829 4.0608 6.2358 28 6 5.1306 -0.1415 3.7516 29 6 4.7295 -0.2015 2.2744 30 1 -1.0498 -0.0002 0.0003 31 1 3.0089 0.8964 0.5040 32 1 3.0093 -0.0104 -1.0277 33 1 1.6419 -4.2771 1.0468 34 1 2.2846 -3.3444 2.4213 35 1 2.1025 -5.7789 2.9485 36 1 3.7876 -5.2084 3.0092 37 1 5.2742 -5.7922 1.1781 38 1 4.6271 -6.7707 -0.1607 39 1 5.5157 -5.0251 -1.7520 40 1 4.9927 -3.3322 -1.5845 41 1 6.0927 -4.0472 -0.3812 42 1 3.7317 -2.0980 2.4962 43 1 2.1184 0.4929 2.5542 44 1 1.4519 -1.1422 2.7841 45 1 2.8334 -1.4697 4.7820 46 1 1.9193 0.0490 4.9566 47 1 7.1109 1.0205 6.3665 48 1 5.4550 -1.1282 4.0825 49 1 5.9437 0.5728 3.8808 50 1 5.5546 -0.6081 1.6896 51 1 4.4922 0.8019 1.9208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278183786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:46 Heat of formation + Delta-G solvation = -26.173225 kcal Electronic energy + Delta-G solvation = -31150.551314 eV Core-core repulsion = 27244.221629 eV Total energy + Delta-G solvation = -3906.329685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.95335 -39.98110 -39.05937 -36.87756 -35.46824 -34.51268 -33.76573 -33.04783 -31.73083 -31.22431 -29.10572 -27.67522 -27.01798 -26.17040 -23.86904 -23.84986 -23.29818 -21.82178 -20.95786 -20.23532 -19.13851 -18.55787 -18.42800 -17.31085 -17.13518 -16.81768 -16.48081 -16.44272 -15.74828 -15.64872 -15.33539 -15.27735 -15.20041 -14.85263 -14.65167 -14.39366 -14.22441 -14.07017 -13.87365 -13.39824 -13.22968 -13.08757 -12.98052 -12.94236 -12.64850 -12.56941 -12.39358 -12.11273 -12.02957 -11.93253 -11.87248 -11.66000 -11.53958 -11.52926 -11.45537 -11.31825 -11.08122 -10.86563 -10.55703 -10.32706 -9.81516 -8.63994 -7.85218 -5.32616 1.37034 1.47239 1.50594 1.55992 1.59125 1.89615 2.35595 2.52414 2.94522 3.29563 3.35383 3.49900 3.55825 3.68461 3.69908 3.77258 3.90026 4.05144 4.07990 4.24606 4.25123 4.32786 4.44904 4.47001 4.47804 4.50907 4.57802 4.63282 4.66524 4.71585 4.79268 4.81160 4.89811 4.91784 4.97882 5.02927 5.04238 5.08995 5.13808 5.14928 5.28283 5.30744 5.34847 5.42635 5.57535 5.67460 5.79139 6.23534 6.31946 6.43597 6.66131 7.07649 7.18825 7.88413 8.38645 9.20708 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003766 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.057883 B = 7432.237824 C = 8411.366577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.230 4.230 3 C 0.221 3.779 4 N -0.597 5.597 5 C 0.525 3.475 6 O -0.567 6.567 7 C -0.105 4.105 8 H 0.104 0.896 9 C -0.142 4.142 10 C 0.062 3.938 11 O -0.398 6.398 12 C 0.066 3.934 13 C -0.101 4.101 14 H 0.068 0.932 15 C -0.145 4.145 16 C 0.150 3.850 17 C -0.122 4.122 18 C 0.146 3.854 19 N -0.608 5.608 20 C -0.259 4.259 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.932 5.932 24 Si 0.961 3.039 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.181 3.819 29 C -0.137 4.137 30 H 0.246 0.754 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.055 0.945 47 H 0.250 0.750 48 H 0.007 0.993 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 -10.030 -10.858 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.231 4.231 3 C 0.099 3.901 4 N -0.327 5.327 5 C 0.315 3.685 6 O -0.446 6.446 7 C -0.126 4.126 8 H 0.122 0.878 9 C -0.180 4.180 10 C -0.014 4.014 11 O -0.317 6.317 12 C -0.011 4.011 13 C -0.120 4.120 14 H 0.086 0.914 15 C -0.203 4.203 16 C 0.048 3.952 17 C -0.162 4.162 18 C 0.020 3.980 19 N -0.332 5.332 20 C -0.389 4.389 21 H 0.082 0.918 22 C -0.240 4.240 23 N -0.579 5.579 24 Si 0.790 3.210 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.055 3.945 29 C -0.177 4.177 30 H 0.262 0.738 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.025 0.975 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.087 -10.206 -11.425 16.485 hybrid contribution 0.295 1.500 0.635 1.655 sum -5.793 -8.706 -10.791 15.026 Atomic orbital electron populations 1.25663 0.96712 0.98158 0.99711 1.23797 0.95480 1.02323 1.01475 1.18200 0.84016 0.89096 0.98797 1.48229 1.63947 1.08959 1.11565 1.20928 0.75860 0.84787 0.86964 1.90637 1.51613 1.85789 1.16552 1.21504 1.00617 0.92453 0.98040 0.87785 1.22202 0.97101 0.99397 0.99338 1.22682 1.01360 0.87484 0.89879 1.87911 1.51691 1.43480 1.48570 1.22790 0.88638 0.96013 0.93622 1.21541 0.99747 0.94419 0.96330 0.91375 1.21768 0.96644 1.01862 1.00004 1.21249 0.94688 1.00770 0.78509 1.22179 0.96932 1.00802 0.96262 1.20997 0.88397 0.94926 0.93672 1.44276 1.08178 1.33753 1.46973 1.19496 0.96083 1.04153 1.19172 0.91845 1.25724 0.97691 1.00970 0.99587 1.70106 1.04016 1.35373 1.48384 0.85305 0.77668 0.80357 0.77709 1.19358 1.22028 1.21859 1.20564 0.90131 0.97237 0.86586 1.22423 0.97063 0.99395 0.98787 0.73786 0.87509 0.88560 0.91585 0.89576 0.86978 0.91820 0.91768 0.87126 0.90905 0.93419 0.91879 0.88117 0.92608 0.91008 0.95606 0.92661 0.94111 0.97531 0.92238 0.91413 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.34 19.25 74.32 1.43 -2.91 16 2 C -0.23 -6.29 12.64 31.12 0.39 -5.89 16 3 C 0.22 5.97 5.05 84.57 0.43 6.40 16 4 N -0.60 -16.30 2.36 -808.18 -1.91 -18.21 16 5 C 0.52 14.82 6.32 87.66 0.55 15.37 16 6 O -0.57 -19.12 14.15 -3.03 -0.04 -19.16 16 7 C -0.11 -2.43 1.22 -11.42 -0.01 -2.45 16 8 H 0.10 2.30 6.97 -2.39 -0.02 2.28 16 9 C -0.14 -3.02 5.10 30.68 0.16 -2.86 16 10 C 0.06 1.18 6.84 72.01 0.49 1.67 16 11 O -0.40 -8.65 10.77 -148.98 -1.60 -10.25 16 12 C 0.07 1.21 6.13 72.01 0.44 1.65 16 13 C -0.10 -2.20 2.05 -10.70 -0.02 -2.22 16 14 H 0.07 1.75 7.86 -2.39 -0.02 1.73 16 15 C -0.15 -2.99 8.93 71.98 0.64 -2.35 16 16 C 0.15 4.27 1.65 45.01 0.07 4.35 16 17 C -0.12 -3.66 4.64 30.67 0.14 -3.52 16 18 C 0.15 5.38 6.52 86.37 0.56 5.94 16 19 N -0.61 -27.89 2.99 -699.06 -2.09 -29.98 16 20 C -0.26 -13.41 9.60 84.04 0.81 -12.60 16 21 H 0.06 3.25 7.86 -2.91 -0.02 3.22 16 22 C -0.04 -2.34 5.03 84.86 0.43 -1.92 16 23 N -0.93 -52.17 11.00 21.65 0.24 -51.93 16 24 Si 0.96 43.17 29.57 68.60 2.03 45.20 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.18 7.87 5.27 86.36 0.46 8.32 16 29 C -0.14 -4.54 5.42 30.67 0.17 -4.38 16 30 H 0.25 3.72 7.80 -4.43 -0.03 3.69 16 31 H 0.11 2.79 6.56 -2.39 -0.02 2.77 16 32 H 0.10 2.62 7.56 -2.38 -0.02 2.61 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.81 6.33 -2.39 -0.02 1.79 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.22 6.31 -2.39 -0.02 1.20 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 2.70 4.51 -2.39 -0.01 2.69 16 43 H 0.06 1.81 7.12 -2.39 -0.02 1.79 16 44 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 45 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 47 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 48 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 49 H 0.06 3.03 6.01 -2.39 -0.01 3.01 16 50 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.05 1.90 7.02 -2.39 -0.02 1.89 16 Total: -1.00 -64.12 391.47 4.66 -59.46 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.90 Total: 22.25 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 7.14 Total: 2.62 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -3.76 Total: -100.12 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.65 Total: -29.41 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -64.12 4.66 -59.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278183786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.288 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds