Wall clock time and date at job start Tue Mar 31 2020 17:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.50330 * 2 1 4 4 C 1.53040 * 109.49955 * 120.10111 * 2 1 3 5 5 C 1.53040 * 109.53902 * 181.31338 * 4 2 1 6 6 C 1.53186 * 109.31505 * 298.63415 * 5 4 2 7 7 N 1.46969 * 108.88910 * 54.55795 * 6 5 4 8 8 C 1.34772 * 120.65385 * 126.47110 * 7 6 5 9 9 O 1.21281 * 119.99968 * 183.31038 * 8 7 6 10 10 C 1.50703 * 120.00016 * 3.30376 * 8 7 6 11 11 C 1.53003 * 109.46945 * 180.02562 * 10 8 7 12 12 C 1.50689 * 109.47329 * 180.02562 * 11 10 8 13 13 C 1.41389 * 126.58261 * 269.71602 * 12 11 10 14 14 C 1.34514 * 106.84342 * 179.83262 * 13 12 11 15 15 O 1.34304 * 108.41630 * 0.42593 * 14 13 12 16 16 C 1.34297 * 109.48241 * 359.72634 * 15 14 13 17 17 C 1.46929 * 118.71196 * 306.64115 * 7 6 5 18 18 H 1.08994 * 109.59158 * 293.50128 * 17 7 6 19 19 C 1.52996 * 109.58494 * 173.21470 * 17 7 6 20 20 C 1.53004 * 109.47336 * 292.10936 * 19 17 7 21 21 N 1.46502 * 109.47045 * 173.62245 * 20 19 17 22 22 C 1.36939 * 119.99782 * 179.97438 * 21 20 19 23 23 H 1.07997 * 120.00030 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00020 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99868 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00075 * 180.27540 * 24 22 21 27 27 H 1.48498 * 109.46881 * 179.72809 * 26 24 22 28 28 H 1.48500 * 109.47149 * 299.72366 * 26 24 22 29 29 H 1.48496 * 109.47191 * 59.72816 * 26 24 22 30 30 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47157 * 300.06561 * 1 2 3 32 32 H 1.09003 * 109.47462 * 60.06176 * 1 2 3 33 33 H 1.08997 * 109.45903 * 301.33585 * 4 2 1 34 34 H 1.08999 * 109.45821 * 61.30857 * 4 2 1 35 35 H 1.09004 * 109.49657 * 58.58932 * 5 4 2 36 36 H 1.08999 * 109.49589 * 178.68298 * 5 4 2 37 37 H 1.08996 * 109.59033 * 174.42146 * 6 5 4 38 38 H 1.09000 * 109.58991 * 294.70699 * 6 5 4 39 39 H 1.09000 * 109.47222 * 299.99792 * 10 8 7 40 40 H 1.08995 * 109.47132 * 60.00489 * 10 8 7 41 41 H 1.09005 * 109.47223 * 300.00326 * 11 10 8 42 42 H 1.09005 * 109.46967 * 60.00065 * 11 10 8 43 43 H 1.07995 * 126.57423 * 359.97438 * 13 12 11 44 44 H 1.08000 * 125.79293 * 180.18866 * 14 13 12 45 45 H 1.08005 * 125.79404 * 179.97438 * 16 15 14 46 46 H 1.09000 * 109.47368 * 172.10934 * 19 17 7 47 47 H 1.09002 * 109.47249 * 52.11017 * 19 17 7 48 48 H 1.09003 * 109.47238 * 53.62417 * 20 19 17 49 49 H 1.08994 * 109.47128 * 293.62324 * 20 19 17 50 50 H 0.96995 * 120.00210 * 359.97438 * 21 20 19 51 51 H 0.96996 * 119.99546 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 3.5708 -0.6955 1.2657 6 6 4.1052 -1.4268 0.0303 7 7 3.5044 -0.8317 -1.1718 8 6 4.2806 -0.3907 -2.1815 9 8 3.7761 0.1527 -3.1413 10 6 5.7752 -0.5725 -2.1178 11 6 6.4143 0.0121 -3.3791 12 6 7.9087 -0.1703 -3.3158 13 6 8.8458 0.7359 -2.7682 14 6 10.0605 0.1776 -2.9167 15 8 9.9106 -1.0077 -3.5302 16 6 8.6079 -1.2239 -3.7747 17 6 2.0412 -0.7235 -1.2499 18 1 1.6032 -1.7202 -1.3000 19 6 1.6517 0.0713 -2.4979 20 6 2.0926 1.5272 -2.3337 21 7 1.8581 2.2525 -3.5847 22 6 2.1776 3.5809 -3.6762 23 1 2.6028 4.0938 -2.8262 24 6 1.9559 4.2681 -4.8617 25 7 1.4381 3.6429 -5.8979 26 14 2.3989 6.0783 -4.9889 27 1 2.0725 6.5732 -6.3504 28 1 1.6246 6.8492 -3.9832 29 1 3.8515 6.2515 -4.7343 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.6582 -0.2252 2.1388 34 1 1.6969 -1.7577 1.2345 35 1 3.9159 0.3384 1.2541 36 1 3.9334 -1.1905 2.1666 37 1 5.1895 -1.3247 -0.0143 38 1 3.8397 -2.4824 0.0871 39 1 6.1668 -0.0578 -1.2405 40 1 6.0094 -1.6349 -2.0505 41 1 6.0226 -0.5022 -4.2568 42 1 6.1800 1.0746 -3.4460 43 1 8.6277 1.6918 -2.3153 44 1 10.9978 0.6108 -2.6000 45 1 8.1921 -2.0956 -4.2581 46 1 0.5705 0.0319 -2.6310 47 1 2.1411 -0.3603 -3.3710 48 1 3.1541 1.5599 -2.0882 49 1 1.5197 1.9920 -1.5313 50 1 1.4765 1.7918 -4.3483 51 1 1.2836 4.1230 -6.7264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316678717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:17 Heat of formation + Delta-G solvation = 11.175957 kcal Electronic energy + Delta-G solvation = -30297.694156 eV Core-core repulsion = 26392.984054 eV Total energy + Delta-G solvation = -3904.710103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.58954 -40.70154 -37.64735 -35.40268 -34.53814 -33.60336 -32.63521 -31.39899 -30.72087 -29.35640 -28.20322 -26.43218 -25.47729 -24.10267 -23.11041 -21.99781 -21.63668 -21.17872 -20.34461 -19.59839 -18.51423 -17.54265 -16.83701 -16.54313 -15.99286 -15.76834 -15.63810 -14.82431 -14.78259 -14.67809 -14.27933 -14.03020 -13.83030 -13.44448 -13.23748 -12.98590 -12.87128 -12.81268 -12.51055 -12.47400 -12.27756 -12.12053 -11.92982 -11.68087 -11.61444 -11.27110 -11.02589 -10.91009 -10.78688 -10.72621 -10.61420 -10.34625 -10.17744 -10.08732 -9.77903 -9.69265 -9.46629 -8.67302 -8.61875 -8.42793 -8.15132 -6.56066 -5.53262 -2.77062 1.70193 2.53778 2.99048 3.07689 3.20056 3.55587 3.59105 3.60719 4.54333 4.67238 4.73538 4.78006 4.80269 4.84033 4.94015 4.99300 5.13501 5.18079 5.23957 5.26654 5.34023 5.47321 5.57136 5.62636 5.65693 5.67345 5.71927 5.75087 5.76127 5.78429 5.84096 5.90412 6.03265 6.05687 6.09568 6.20658 6.25290 6.30147 6.35870 6.41055 6.54490 6.58673 6.67418 6.74688 6.83001 7.06005 7.26773 7.38949 7.69959 7.87839 8.63445 8.67133 9.76974 10.44149 10.78310 11.70554 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006693 B = 0.004707 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4182.597645 B = 5947.449309 C = 9289.584334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.110 3.890 7 N -0.613 5.613 8 C 0.491 3.509 9 O -0.475 6.475 10 C -0.129 4.129 11 C -0.039 4.039 12 C -0.169 4.169 13 C -0.206 4.206 14 C -0.049 4.049 15 O -0.181 6.181 16 C -0.047 4.047 17 C 0.161 3.839 18 H 0.063 0.937 19 C -0.131 4.131 20 C 0.175 3.825 21 N -0.722 5.722 22 C -0.221 4.221 23 H 0.063 0.937 24 C -0.020 4.020 25 N -0.936 5.936 26 Si 0.901 3.099 27 H -0.292 1.292 28 H -0.289 1.289 29 H -0.289 1.289 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.148 0.852 44 H 0.200 0.800 45 H 0.200 0.800 46 H 0.049 0.951 47 H 0.103 0.897 48 H 0.026 0.974 49 H -0.004 1.004 50 H 0.381 0.619 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.148 -15.686 14.922 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.103 0.897 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.013 4.013 7 N -0.349 5.349 8 C 0.278 3.722 9 O -0.348 6.348 10 C -0.169 4.169 11 C -0.076 4.076 12 C -0.171 4.171 13 C -0.225 4.225 14 C -0.116 4.116 15 O -0.077 6.077 16 C -0.114 4.114 17 C 0.058 3.942 18 H 0.081 0.919 19 C -0.169 4.169 20 C 0.048 3.952 21 N -0.365 5.365 22 C -0.353 4.353 23 H 0.081 0.919 24 C -0.215 4.215 25 N -0.587 5.587 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.216 1.216 29 H -0.216 1.216 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.165 0.835 44 H 0.216 0.784 45 H 0.217 0.783 46 H 0.068 0.932 47 H 0.121 0.879 48 H 0.044 0.956 49 H 0.013 0.987 50 H 0.214 0.786 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.172 -15.415 14.330 23.828 hybrid contribution 0.038 1.093 -0.041 1.095 sum 11.211 -14.321 14.289 23.129 Atomic orbital electron populations 1.21787 0.94553 1.01419 1.02476 1.21657 0.96121 1.00989 0.94054 0.89735 1.21585 0.94890 1.00555 0.98067 1.21920 0.96588 1.01519 0.97392 1.21646 0.98187 0.96777 0.84700 1.48045 1.06527 1.62363 1.17992 1.20603 0.88956 0.79231 0.83378 1.90992 1.73054 1.38080 1.32700 1.21657 0.92598 1.02372 1.00254 1.19744 0.87244 1.03530 0.97116 1.20576 0.97170 0.95353 1.03953 1.21842 0.92362 1.02042 1.06255 1.23980 1.00164 0.85678 1.01772 1.84043 1.27759 1.35085 1.60835 1.23886 0.80158 1.01606 1.05741 1.21261 0.78719 0.98247 0.95989 0.91912 1.22390 0.99476 0.97671 0.97325 1.20753 0.96692 0.88641 0.89080 1.42211 1.75744 1.07800 1.10721 1.19152 1.33024 0.86431 0.96711 0.91945 1.24650 1.02843 0.97699 0.96285 1.69660 1.51063 1.35225 1.02708 0.86345 0.77972 0.85944 0.76459 1.21841 1.21608 1.21617 0.93072 0.92800 0.91496 0.91934 0.92145 0.91377 0.91110 0.90005 0.91854 0.89573 0.89762 0.90216 0.89511 0.83462 0.78367 0.78306 0.93228 0.87913 0.95630 0.98677 0.78572 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.97 37.15 0.33 -1.41 16 2 C -0.11 -1.37 1.94 -90.50 -0.18 -1.55 16 3 H 0.08 1.29 6.14 -51.93 -0.32 0.97 16 4 C -0.11 -1.09 5.17 -26.69 -0.14 -1.22 16 5 C -0.14 -1.18 6.08 -26.61 -0.16 -1.34 16 6 C 0.11 0.99 6.33 -3.69 -0.02 0.97 16 7 N -0.61 -7.87 2.94 -165.19 -0.49 -8.36 16 8 C 0.49 7.40 6.58 -10.99 -0.07 7.33 16 9 O -0.48 -9.47 9.42 5.56 0.05 -9.42 16 10 C -0.13 -1.50 4.06 -27.88 -0.11 -1.61 16 11 C -0.04 -0.52 5.02 -27.89 -0.14 -0.66 16 12 C -0.17 -2.04 5.42 -104.74 -0.57 -2.61 16 13 C -0.21 -2.34 10.87 -39.70 -0.43 -2.77 16 14 C -0.05 -0.47 12.09 29.42 0.36 -0.12 16 15 O -0.18 -2.00 10.65 5.72 0.06 -1.94 16 16 C -0.05 -0.50 12.01 29.42 0.35 -0.14 16 17 C 0.16 2.25 2.66 -67.59 -0.18 2.07 16 18 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.13 -2.42 4.16 -26.73 -0.11 -2.53 16 20 C 0.18 3.94 4.24 -4.04 -0.02 3.92 16 21 N -0.72 -20.16 5.54 -59.91 -0.33 -20.50 16 22 C -0.22 -6.70 9.99 -15.06 -0.15 -6.85 16 23 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 25 N -0.94 -30.22 13.06 55.49 0.72 -29.49 16 26 Si 0.90 23.82 29.55 -169.99 -5.02 18.80 16 27 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.95 6.80 -51.93 -0.35 0.60 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.62 5.96 -51.93 -0.31 0.31 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.92 7.55 -51.93 -0.39 0.52 16 40 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 41 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 42 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 43 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.05 0.91 7.03 -51.93 -0.37 0.54 16 47 H 0.10 2.12 5.71 -53.22 -0.30 1.82 16 48 H 0.03 0.61 5.34 -51.93 -0.28 0.33 16 49 H 0.00 -0.10 6.61 -51.93 -0.34 -0.44 16 50 H 0.38 11.34 7.67 -40.82 -0.31 11.02 16 51 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -35.90 392.09 -8.86 -44.76 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.43 Total: 9.47 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.34 Total: -9.24 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.09 Total: -58.35 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.11 Total: -11.36 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.02 Total: 18.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.90 -8.86 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316678717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.936 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds