Wall clock time and date at job start Tue Mar 31 2020 17:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.50330 * 2 1 4 4 C 1.53040 * 109.49955 * 120.10111 * 2 1 3 5 5 C 1.53040 * 109.53902 * 181.31338 * 4 2 1 6 6 C 1.53186 * 109.31505 * 298.63415 * 5 4 2 7 7 N 1.46969 * 108.88910 * 54.55795 * 6 5 4 8 8 C 1.34772 * 120.65385 * 126.47110 * 7 6 5 9 9 O 1.21281 * 119.99968 * 183.31038 * 8 7 6 10 10 C 1.50703 * 120.00016 * 3.30376 * 8 7 6 11 11 C 1.53003 * 109.46945 * 180.02562 * 10 8 7 12 12 C 1.50689 * 109.47329 * 180.02562 * 11 10 8 13 13 C 1.41389 * 126.58261 * 269.71602 * 12 11 10 14 14 C 1.34514 * 106.84342 * 179.83262 * 13 12 11 15 15 O 1.34304 * 108.41630 * 0.42593 * 14 13 12 16 16 C 1.34297 * 109.48241 * 359.72634 * 15 14 13 17 17 C 1.46929 * 118.71196 * 306.64115 * 7 6 5 18 18 H 1.08994 * 109.59158 * 293.50128 * 17 7 6 19 19 C 1.52996 * 109.58494 * 173.21470 * 17 7 6 20 20 C 1.53004 * 109.47336 * 292.10936 * 19 17 7 21 21 N 1.46502 * 109.47045 * 173.62245 * 20 19 17 22 22 C 1.36939 * 119.99782 * 179.97438 * 21 20 19 23 23 H 1.07997 * 120.00030 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00020 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99868 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00075 * 180.27540 * 24 22 21 27 27 H 1.48498 * 109.46881 * 179.72809 * 26 24 22 28 28 H 1.48500 * 109.47149 * 299.72366 * 26 24 22 29 29 H 1.48496 * 109.47191 * 59.72816 * 26 24 22 30 30 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47157 * 300.06561 * 1 2 3 32 32 H 1.09003 * 109.47462 * 60.06176 * 1 2 3 33 33 H 1.08997 * 109.45903 * 301.33585 * 4 2 1 34 34 H 1.08999 * 109.45821 * 61.30857 * 4 2 1 35 35 H 1.09004 * 109.49657 * 58.58932 * 5 4 2 36 36 H 1.08999 * 109.49589 * 178.68298 * 5 4 2 37 37 H 1.08996 * 109.59033 * 174.42146 * 6 5 4 38 38 H 1.09000 * 109.58991 * 294.70699 * 6 5 4 39 39 H 1.09000 * 109.47222 * 299.99792 * 10 8 7 40 40 H 1.08995 * 109.47132 * 60.00489 * 10 8 7 41 41 H 1.09005 * 109.47223 * 300.00326 * 11 10 8 42 42 H 1.09005 * 109.46967 * 60.00065 * 11 10 8 43 43 H 1.07995 * 126.57423 * 359.97438 * 13 12 11 44 44 H 1.08000 * 125.79293 * 180.18866 * 14 13 12 45 45 H 1.08005 * 125.79404 * 179.97438 * 16 15 14 46 46 H 1.09000 * 109.47368 * 172.10934 * 19 17 7 47 47 H 1.09002 * 109.47249 * 52.11017 * 19 17 7 48 48 H 1.09003 * 109.47238 * 53.62417 * 20 19 17 49 49 H 1.08994 * 109.47128 * 293.62324 * 20 19 17 50 50 H 0.96995 * 120.00210 * 359.97438 * 21 20 19 51 51 H 0.96996 * 119.99546 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 3.5708 -0.6955 1.2657 6 6 4.1052 -1.4268 0.0303 7 7 3.5044 -0.8317 -1.1718 8 6 4.2806 -0.3907 -2.1815 9 8 3.7761 0.1527 -3.1413 10 6 5.7752 -0.5725 -2.1178 11 6 6.4143 0.0121 -3.3791 12 6 7.9087 -0.1703 -3.3158 13 6 8.8458 0.7359 -2.7682 14 6 10.0605 0.1776 -2.9167 15 8 9.9106 -1.0077 -3.5302 16 6 8.6079 -1.2239 -3.7747 17 6 2.0412 -0.7235 -1.2499 18 1 1.6032 -1.7202 -1.3000 19 6 1.6517 0.0713 -2.4979 20 6 2.0926 1.5272 -2.3337 21 7 1.8581 2.2525 -3.5847 22 6 2.1776 3.5809 -3.6762 23 1 2.6028 4.0938 -2.8262 24 6 1.9559 4.2681 -4.8617 25 7 1.4381 3.6429 -5.8979 26 14 2.3989 6.0783 -4.9889 27 1 2.0725 6.5732 -6.3504 28 1 1.6246 6.8492 -3.9832 29 1 3.8515 6.2515 -4.7343 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.6582 -0.2252 2.1388 34 1 1.6969 -1.7577 1.2345 35 1 3.9159 0.3384 1.2541 36 1 3.9334 -1.1905 2.1666 37 1 5.1895 -1.3247 -0.0143 38 1 3.8397 -2.4824 0.0871 39 1 6.1668 -0.0578 -1.2405 40 1 6.0094 -1.6349 -2.0505 41 1 6.0226 -0.5022 -4.2568 42 1 6.1800 1.0746 -3.4460 43 1 8.6277 1.6918 -2.3153 44 1 10.9978 0.6108 -2.6000 45 1 8.1921 -2.0956 -4.2581 46 1 0.5705 0.0319 -2.6310 47 1 2.1411 -0.3603 -3.3710 48 1 3.1541 1.5599 -2.0882 49 1 1.5197 1.9920 -1.5313 50 1 1.4765 1.7918 -4.3483 51 1 1.2836 4.1230 -6.7264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316678717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:16 Heat of formation + Delta-G solvation = -11.802850 kcal Electronic energy + Delta-G solvation = -30298.690592 eV Core-core repulsion = 26392.984054 eV Total energy + Delta-G solvation = -3905.706539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.41930 -41.85646 -38.73357 -36.94008 -35.78490 -34.97400 -33.96570 -32.57056 -32.31404 -30.35489 -29.58046 -27.57382 -26.69303 -25.62017 -24.44736 -23.63146 -22.44244 -22.20851 -21.28066 -20.71168 -19.69039 -19.04565 -18.37723 -17.67644 -16.99312 -16.93123 -16.74512 -16.50009 -15.82941 -15.68069 -15.55569 -15.19083 -15.12099 -14.98151 -14.45762 -14.37906 -14.25072 -13.76459 -13.65511 -13.48125 -13.26816 -13.21481 -13.10325 -12.97039 -12.87231 -12.71290 -12.51555 -12.37379 -12.25868 -12.07820 -11.91136 -11.81771 -11.66742 -11.55091 -11.36191 -11.14940 -10.79601 -10.58791 -9.80725 -9.40481 -9.32479 -8.82704 -7.91291 -5.16911 0.90139 1.40435 1.45732 1.51745 1.65921 1.84247 2.16537 2.34359 2.56361 3.40312 3.56401 3.81617 3.86155 3.91065 3.92668 4.03026 4.12596 4.16704 4.20198 4.28961 4.33216 4.38392 4.45969 4.59406 4.60271 4.66766 4.68975 4.72015 4.82211 4.87396 4.88666 4.89646 4.95744 4.97207 5.07411 5.14089 5.17528 5.24912 5.28254 5.28951 5.37297 5.38210 5.44131 5.48734 5.54480 5.59009 5.61599 5.89284 6.23449 6.31213 6.62862 7.35173 7.48868 8.19372 8.42573 9.33264 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006693 B = 0.004707 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4182.597645 B = 5947.449309 C = 9289.584334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.133 4.133 6 C 0.104 3.896 7 N -0.610 5.610 8 C 0.483 3.517 9 O -0.537 6.537 10 C -0.114 4.114 11 C -0.029 4.029 12 C -0.191 4.191 13 C -0.234 4.234 14 C -0.035 4.035 15 O -0.186 6.186 16 C -0.041 4.041 17 C 0.165 3.835 18 H 0.086 0.914 19 C -0.118 4.118 20 C 0.188 3.812 21 N -0.735 5.735 22 C -0.235 4.235 23 H 0.063 0.937 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.291 1.291 28 H -0.276 1.276 29 H -0.282 1.282 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.146 0.854 44 H 0.236 0.764 45 H 0.226 0.774 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.017 0.983 49 H -0.011 1.011 50 H 0.367 0.633 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.867 -17.414 17.647 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.068 0.932 4 C -0.145 4.145 5 C -0.171 4.171 6 C -0.018 4.018 7 N -0.344 5.344 8 C 0.272 3.728 9 O -0.415 6.415 10 C -0.154 4.154 11 C -0.067 4.067 12 C -0.192 4.192 13 C -0.253 4.253 14 C -0.102 4.102 15 O -0.082 6.082 16 C -0.108 4.108 17 C 0.062 3.938 18 H 0.104 0.896 19 C -0.155 4.155 20 C 0.062 3.938 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.081 0.919 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.801 3.199 27 H -0.217 1.217 28 H -0.202 1.202 29 H -0.208 1.208 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.164 0.836 44 H 0.252 0.748 45 H 0.242 0.758 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.035 0.965 49 H 0.007 0.993 50 H 0.198 0.802 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.909 -17.172 17.145 27.486 hybrid contribution -0.479 1.599 -0.849 1.872 sum 12.430 -15.574 16.296 25.741 Atomic orbital electron populations 1.21765 0.94216 1.02531 1.01471 1.21587 0.96417 0.99336 0.95171 0.93172 1.21559 0.95545 1.01179 0.96203 1.21929 0.95849 1.00821 0.98527 1.22013 0.99154 0.97854 0.82760 1.48177 1.05936 1.61526 1.18794 1.21258 0.90471 0.78167 0.82886 1.90980 1.74306 1.41069 1.35130 1.21593 0.89764 1.04373 0.99652 1.19506 0.88903 1.00623 0.97707 1.20509 0.96214 0.96742 1.05778 1.22002 0.93194 1.02454 1.07630 1.24624 1.00916 0.84743 0.99919 1.84073 1.27740 1.35569 1.60840 1.24301 0.79892 1.01838 1.04733 1.21177 0.79931 0.98535 0.94189 0.89575 1.22149 0.98559 0.95549 0.99248 1.20780 0.95898 0.90634 0.86523 1.42443 1.75588 1.07549 1.11976 1.19518 1.32654 0.87640 0.96928 0.91889 1.25540 1.03213 1.02589 0.95864 1.69844 1.52392 1.37048 1.03123 0.85218 0.77931 0.80150 0.76556 1.21681 1.20187 1.20800 0.90855 0.91692 0.94620 0.91026 0.90104 0.93266 0.87844 0.88203 0.89207 0.88119 0.86397 0.91758 0.93831 0.83575 0.74755 0.75786 0.93911 0.90191 0.96494 0.99310 0.80199 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.97 71.98 0.65 -2.67 16 2 C -0.11 -2.58 1.94 -10.71 -0.02 -2.60 16 3 H 0.05 1.57 6.14 -2.39 -0.01 1.55 16 4 C -0.11 -1.71 5.17 30.62 0.16 -1.55 16 5 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 6 C 0.10 1.50 6.33 86.35 0.55 2.04 16 7 N -0.61 -14.98 2.94 -794.93 -2.33 -17.31 16 8 C 0.48 14.83 6.58 87.66 0.58 15.41 16 9 O -0.54 -22.90 9.42 -3.03 -0.03 -22.93 16 10 C -0.11 -2.59 4.06 29.85 0.12 -2.47 16 11 C -0.03 -0.83 5.02 29.85 0.15 -0.68 16 12 C -0.19 -4.57 5.42 -19.94 -0.11 -4.68 16 13 C -0.23 -5.18 10.87 22.19 0.24 -4.94 16 14 C -0.04 -0.61 12.09 66.97 0.81 0.20 16 15 O -0.19 -3.71 10.65 -2.44 -0.03 -3.73 16 16 C -0.04 -0.80 12.01 66.97 0.80 0.00 16 17 C 0.17 4.52 2.66 44.98 0.12 4.64 16 18 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 19 C -0.12 -4.57 4.16 30.59 0.13 -4.45 16 20 C 0.19 8.96 4.24 86.38 0.37 9.33 16 21 N -0.73 -43.56 5.54 -343.45 -1.90 -45.46 16 22 C -0.24 -14.84 9.99 84.03 0.84 -14.00 16 23 H 0.06 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 25 N -0.97 -65.08 13.06 21.65 0.28 -64.80 16 26 Si 0.97 50.23 29.55 68.60 2.03 52.26 16 27 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 28 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 29 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.03 1.04 6.80 -2.39 -0.02 1.02 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 1.12 5.96 -2.39 -0.01 1.10 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.10 2.01 7.55 -2.39 -0.02 1.99 16 40 H 0.12 1.90 8.06 -2.39 -0.02 1.88 16 41 H 0.06 1.97 8.10 -2.38 -0.02 1.95 16 42 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 43 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.24 2.06 8.06 -2.91 -0.02 2.03 16 45 H 0.23 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.04 1.67 7.03 -2.39 -0.02 1.65 16 47 H 0.08 3.55 5.71 -22.85 -0.13 3.42 16 48 H 0.02 0.87 5.34 -2.39 -0.01 0.85 16 49 H -0.01 -0.51 6.61 -2.39 -0.02 -0.53 16 50 H 0.37 23.35 7.67 -92.71 -0.71 22.64 16 51 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -83.57 392.09 4.14 -79.42 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.09 Total: 35.27 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 6.03 Total: -12.72 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -3.95 Total: -127.57 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.03 Total: 52.26 kcal Total: -83.57 4.14 -79.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316678717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.622 kcal (2) G-P(sol) polarization free energy of solvation -83.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds