Wall clock time and date at job start Tue Mar 31 2020 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.49237 * 2 1 4 4 C 1.53038 * 109.52372 * 239.91769 * 2 1 3 5 5 C 1.53040 * 109.53555 * 178.66512 * 4 2 1 6 6 C 1.53190 * 109.31460 * 61.36743 * 5 4 2 7 7 N 1.46925 * 108.77283 * 305.36313 * 6 5 4 8 8 C 1.34778 * 120.63200 * 233.60966 * 7 6 5 9 9 O 1.21279 * 120.00213 * 186.04626 * 8 7 6 10 10 C 1.50699 * 119.99857 * 6.03754 * 8 7 6 11 11 C 1.52999 * 109.47107 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47391 * 180.02562 * 11 10 8 13 13 C 1.41379 * 126.58218 * 89.99056 * 12 11 10 14 14 C 1.34508 * 106.84263 * 179.97438 * 13 12 11 15 15 O 1.34305 * 108.41995 * 0.02562 * 14 13 12 16 16 C 1.34306 * 109.47732 * 359.76769 * 15 14 13 17 17 C 1.46931 * 118.73941 * 53.61245 * 7 6 5 18 18 H 1.08998 * 109.59051 * 66.17153 * 17 7 6 19 19 C 1.52998 * 109.58681 * 186.60434 * 17 7 6 20 20 C 1.53001 * 109.47481 * 65.36890 * 19 17 7 21 21 N 1.46503 * 109.47290 * 185.94158 * 20 19 17 22 22 C 1.36927 * 120.00153 * 179.97438 * 21 20 19 23 23 H 1.08002 * 120.00279 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00364 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99795 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00232 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47040 * 89.99865 * 26 24 22 28 28 H 1.48498 * 109.47195 * 209.99937 * 26 24 22 29 29 H 1.48495 * 109.47291 * 330.00109 * 26 24 22 30 30 H 1.08993 * 109.47104 * 299.93364 * 1 2 3 31 31 H 1.08992 * 109.47073 * 59.93998 * 1 2 3 32 32 H 1.08998 * 109.46799 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46087 * 298.68731 * 4 2 1 34 34 H 1.09005 * 109.45746 * 58.64951 * 4 2 1 35 35 H 1.09004 * 109.49597 * 181.32159 * 5 4 2 36 36 H 1.09005 * 109.49954 * 301.41549 * 5 4 2 37 37 H 1.09001 * 109.58553 * 65.14806 * 6 5 4 38 38 H 1.09003 * 109.58765 * 185.43651 * 6 5 4 39 39 H 1.08998 * 109.47045 * 300.00028 * 10 8 7 40 40 H 1.08998 * 109.47114 * 60.00248 * 10 8 7 41 41 H 1.09009 * 109.46907 * 300.00096 * 11 10 8 42 42 H 1.08998 * 109.47405 * 59.99846 * 11 10 8 43 43 H 1.08003 * 126.57597 * 359.93780 * 13 12 11 44 44 H 1.07998 * 125.78928 * 180.02562 * 14 13 12 45 45 H 1.08000 * 125.79097 * 180.23784 * 16 15 14 46 46 H 1.08998 * 109.46954 * 185.36937 * 19 17 7 47 47 H 1.09006 * 109.46821 * 305.36952 * 19 17 7 48 48 H 1.09006 * 109.47241 * 305.94297 * 20 19 17 49 49 H 1.09001 * 109.47151 * 65.93941 * 20 19 17 50 50 H 0.96999 * 119.99611 * 0.02562 * 21 20 19 51 51 H 0.97005 * 120.00454 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5716 -0.6941 -1.2653 6 6 4.1061 -1.4254 -0.0299 7 7 3.5048 -0.8280 1.1702 8 6 4.2808 -0.3843 2.1789 9 8 3.7725 0.0055 3.2087 10 6 5.7801 -0.3727 2.0271 11 6 6.4180 0.1725 3.3064 12 6 7.9173 0.1848 3.1544 13 6 8.7041 1.2438 2.6464 14 6 9.9843 0.8332 2.6886 15 8 10.0143 -0.4116 3.1918 16 6 8.7641 -0.8082 3.4805 17 6 2.0413 -0.7234 1.2498 18 1 1.6058 -1.7214 1.2982 19 6 1.6511 0.0708 2.4979 20 6 2.1435 1.5128 2.3595 21 7 1.8963 2.2354 3.6097 22 6 2.2569 3.5515 3.7226 23 1 2.7231 4.0571 2.8899 24 6 2.0231 4.2361 4.9074 25 7 1.4545 3.6202 5.9221 26 14 2.5143 6.0318 5.0611 27 1 1.3837 6.8929 4.6305 28 1 2.8551 6.3325 6.4749 29 1 3.6947 6.2976 4.2002 30 1 -0.3633 0.5128 0.8905 31 1 -0.3633 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6979 -1.7573 -1.2350 34 1 1.6589 -0.2246 -2.1388 35 1 3.9346 -1.1887 -2.1663 36 1 3.9161 0.3400 -1.2534 37 1 3.8388 -2.4807 -0.0859 38 1 5.1906 -1.3249 0.0135 39 1 6.1350 -1.3877 1.8486 40 1 6.0551 0.2619 1.1846 41 1 6.0630 1.1876 3.4853 42 1 6.1430 -0.4623 4.1486 43 1 8.3458 2.1991 2.2919 44 1 10.8424 1.4072 2.3715 45 1 8.4857 -1.7632 3.9012 46 1 0.5666 0.0662 2.6071 47 1 2.1067 -0.3860 3.3765 48 1 3.2123 1.5128 2.1450 49 1 1.6096 2.0025 1.5451 50 1 1.4779 1.7812 4.3578 51 1 1.2908 4.0986 6.7499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316678721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:25 Heat of formation + Delta-G solvation = 8.300068 kcal Electronic energy + Delta-G solvation = -30363.009731 eV Core-core repulsion = 26458.174921 eV Total energy + Delta-G solvation = -3904.834811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.57017 -40.70976 -37.65474 -35.37445 -34.53762 -33.62529 -32.64361 -31.38150 -30.73916 -29.34578 -28.21175 -26.43047 -25.51946 -24.08984 -23.11195 -21.98295 -21.61513 -21.19500 -20.33058 -19.58396 -18.57505 -17.52570 -16.85219 -16.54083 -15.97299 -15.76333 -15.64169 -14.81173 -14.76726 -14.65735 -14.31210 -14.00602 -13.86775 -13.45233 -13.23869 -13.00163 -12.85648 -12.80099 -12.52592 -12.48129 -12.26658 -12.05648 -11.90768 -11.66206 -11.62535 -11.27531 -11.02963 -10.93644 -10.77606 -10.76313 -10.62104 -10.45837 -10.17952 -10.10991 -9.78286 -9.66992 -9.48496 -8.64803 -8.61898 -8.40189 -8.22111 -6.59556 -5.55146 -2.79351 1.71927 2.55930 2.97938 3.09351 3.20212 3.53897 3.58155 3.60440 4.54418 4.67411 4.74957 4.76812 4.79342 4.83740 4.95015 5.00023 5.13662 5.18055 5.23649 5.28341 5.34717 5.47468 5.57147 5.62511 5.65749 5.67150 5.73112 5.74873 5.76722 5.78249 5.83987 5.89857 6.05093 6.05133 6.08563 6.19809 6.26535 6.32772 6.35356 6.39520 6.56130 6.57306 6.65251 6.72710 6.82629 7.07799 7.22024 7.36608 7.69900 7.86423 8.63108 8.64957 9.75045 10.41558 10.75947 11.68628 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006504 B = 0.004963 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4304.208952 B = 5640.820229 C = 9080.972797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.110 3.890 7 N -0.615 5.615 8 C 0.500 3.500 9 O -0.482 6.482 10 C -0.130 4.130 11 C -0.039 4.039 12 C -0.169 4.169 13 C -0.205 4.205 14 C -0.049 4.049 15 O -0.182 6.182 16 C -0.048 4.048 17 C 0.162 3.838 18 H 0.063 0.937 19 C -0.138 4.138 20 C 0.173 3.827 21 N -0.723 5.723 22 C -0.222 4.222 23 H 0.063 0.937 24 C -0.019 4.019 25 N -0.935 5.935 26 Si 0.900 3.100 27 H -0.293 1.293 28 H -0.293 1.293 29 H -0.285 1.285 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.148 0.852 44 H 0.200 0.800 45 H 0.200 0.800 46 H 0.051 0.949 47 H 0.109 0.891 48 H 0.021 0.979 49 H -0.003 1.003 50 H 0.382 0.618 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.023 -14.731 -15.419 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.014 4.014 7 N -0.350 5.350 8 C 0.288 3.712 9 O -0.356 6.356 10 C -0.170 4.170 11 C -0.077 4.077 12 C -0.170 4.170 13 C -0.224 4.224 14 C -0.116 4.116 15 O -0.078 6.078 16 C -0.115 4.115 17 C 0.059 3.941 18 H 0.081 0.919 19 C -0.175 4.175 20 C 0.045 3.955 21 N -0.365 5.365 22 C -0.354 4.354 23 H 0.081 0.919 24 C -0.214 4.214 25 N -0.585 5.585 26 Si 0.733 3.267 27 H -0.220 1.220 28 H -0.219 1.219 29 H -0.211 1.211 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.166 0.834 44 H 0.216 0.784 45 H 0.217 0.783 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.039 0.961 49 H 0.015 0.985 50 H 0.215 0.785 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.085 -14.523 -14.827 23.530 hybrid contribution -0.004 1.111 0.061 1.113 sum 11.082 -13.412 -14.766 22.819 Atomic orbital electron populations 1.21789 0.94536 1.01454 1.02457 1.21647 0.96122 1.00948 0.94068 0.89804 1.21584 0.94906 1.00567 0.98037 1.21928 0.96566 1.01521 0.97435 1.21651 0.98218 0.96753 0.84731 1.48063 1.06569 1.62222 1.18182 1.20573 0.89033 0.77781 0.83833 1.90908 1.73175 1.43548 1.27939 1.21666 0.92471 1.02582 1.00250 1.19749 0.87257 1.04055 0.96601 1.20575 0.97139 0.94579 1.04696 1.21854 0.92956 1.01238 1.06384 1.23978 0.99355 0.84607 1.03662 1.84043 1.30770 1.29453 1.63486 1.23874 0.80674 1.00934 1.06007 1.21246 0.78671 0.98301 0.95920 0.91893 1.22440 0.99617 0.97644 0.97826 1.20727 0.96620 0.88946 0.89159 1.42223 1.73076 1.09264 1.11948 1.19188 1.31433 0.87364 0.97443 0.91878 1.24656 1.02524 0.97827 0.96420 1.69665 1.49458 1.35564 1.03840 0.86268 0.77918 0.85887 0.76674 1.22034 1.21933 1.21065 0.91508 0.92789 0.93045 0.92131 0.91926 0.91125 0.91369 0.91796 0.89959 0.89798 0.89436 0.89351 0.90290 0.83416 0.78362 0.78335 0.93058 0.87289 0.96121 0.98525 0.78503 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.97 37.16 0.33 -1.40 16 2 C -0.11 -1.36 1.99 -90.50 -0.18 -1.54 16 3 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 4 C -0.11 -1.08 5.17 -26.69 -0.14 -1.22 16 5 C -0.14 -1.17 6.08 -26.61 -0.16 -1.34 16 6 C 0.11 0.99 6.34 -3.71 -0.02 0.97 16 7 N -0.61 -7.93 2.93 -165.22 -0.48 -8.41 16 8 C 0.50 7.61 6.15 -10.99 -0.07 7.54 16 9 O -0.48 -9.61 9.97 5.56 0.06 -9.56 16 10 C -0.13 -1.54 4.04 -27.88 -0.11 -1.66 16 11 C -0.04 -0.53 5.02 -27.88 -0.14 -0.67 16 12 C -0.17 -2.07 5.42 -104.74 -0.57 -2.64 16 13 C -0.21 -2.41 10.87 -39.71 -0.43 -2.84 16 14 C -0.05 -0.49 12.09 29.41 0.36 -0.13 16 15 O -0.18 -2.03 10.65 5.70 0.06 -1.97 16 16 C -0.05 -0.51 12.01 29.42 0.35 -0.16 16 17 C 0.16 2.26 2.66 -67.60 -0.18 2.08 16 18 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.14 -2.55 4.20 -26.73 -0.11 -2.66 16 20 C 0.17 3.86 4.40 -4.04 -0.02 3.85 16 21 N -0.72 -20.10 5.59 -59.90 -0.34 -20.43 16 22 C -0.22 -6.70 9.99 -15.06 -0.15 -6.85 16 23 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 25 N -0.94 -30.11 13.06 55.49 0.72 -29.38 16 26 Si 0.90 23.73 29.55 -169.99 -5.02 18.71 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 29 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.07 0.94 6.74 -51.93 -0.35 0.59 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.62 5.94 -51.93 -0.31 0.32 16 39 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 40 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 41 H 0.09 1.50 8.10 -51.92 -0.42 1.08 16 42 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.05 0.94 6.90 -51.93 -0.36 0.58 16 47 H 0.11 2.27 5.63 -53.47 -0.30 1.97 16 48 H 0.02 0.49 5.20 -51.93 -0.27 0.22 16 49 H 0.00 -0.06 6.59 -51.93 -0.34 -0.40 16 50 H 0.38 11.33 7.67 -40.82 -0.31 11.02 16 51 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -35.79 392.09 -8.84 -44.63 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.41 Total: 9.87 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.34 Total: -9.36 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.09 Total: -58.23 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.12 Total: -11.53 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.02 Total: 18.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.79 -8.84 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316678721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.932 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds