Wall clock time and date at job start Tue Mar 31 2020 17:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.49237 * 2 1 4 4 C 1.53038 * 109.52372 * 239.91769 * 2 1 3 5 5 C 1.53040 * 109.53555 * 178.66512 * 4 2 1 6 6 C 1.53190 * 109.31460 * 61.36743 * 5 4 2 7 7 N 1.46925 * 108.77283 * 305.36313 * 6 5 4 8 8 C 1.34778 * 120.63200 * 233.60966 * 7 6 5 9 9 O 1.21279 * 120.00213 * 186.04626 * 8 7 6 10 10 C 1.50699 * 119.99857 * 6.03754 * 8 7 6 11 11 C 1.52999 * 109.47107 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47391 * 180.02562 * 11 10 8 13 13 C 1.41379 * 126.58218 * 89.99056 * 12 11 10 14 14 C 1.34508 * 106.84263 * 179.97438 * 13 12 11 15 15 O 1.34305 * 108.41995 * 0.02562 * 14 13 12 16 16 C 1.34306 * 109.47732 * 359.76769 * 15 14 13 17 17 C 1.46931 * 118.73941 * 53.61245 * 7 6 5 18 18 H 1.08998 * 109.59051 * 66.17153 * 17 7 6 19 19 C 1.52998 * 109.58681 * 186.60434 * 17 7 6 20 20 C 1.53001 * 109.47481 * 65.36890 * 19 17 7 21 21 N 1.46503 * 109.47290 * 185.94158 * 20 19 17 22 22 C 1.36927 * 120.00153 * 179.97438 * 21 20 19 23 23 H 1.08002 * 120.00279 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00364 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99795 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00232 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47040 * 89.99865 * 26 24 22 28 28 H 1.48498 * 109.47195 * 209.99937 * 26 24 22 29 29 H 1.48495 * 109.47291 * 330.00109 * 26 24 22 30 30 H 1.08993 * 109.47104 * 299.93364 * 1 2 3 31 31 H 1.08992 * 109.47073 * 59.93998 * 1 2 3 32 32 H 1.08998 * 109.46799 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46087 * 298.68731 * 4 2 1 34 34 H 1.09005 * 109.45746 * 58.64951 * 4 2 1 35 35 H 1.09004 * 109.49597 * 181.32159 * 5 4 2 36 36 H 1.09005 * 109.49954 * 301.41549 * 5 4 2 37 37 H 1.09001 * 109.58553 * 65.14806 * 6 5 4 38 38 H 1.09003 * 109.58765 * 185.43651 * 6 5 4 39 39 H 1.08998 * 109.47045 * 300.00028 * 10 8 7 40 40 H 1.08998 * 109.47114 * 60.00248 * 10 8 7 41 41 H 1.09009 * 109.46907 * 300.00096 * 11 10 8 42 42 H 1.08998 * 109.47405 * 59.99846 * 11 10 8 43 43 H 1.08003 * 126.57597 * 359.93780 * 13 12 11 44 44 H 1.07998 * 125.78928 * 180.02562 * 14 13 12 45 45 H 1.08000 * 125.79097 * 180.23784 * 16 15 14 46 46 H 1.08998 * 109.46954 * 185.36937 * 19 17 7 47 47 H 1.09006 * 109.46821 * 305.36952 * 19 17 7 48 48 H 1.09006 * 109.47241 * 305.94297 * 20 19 17 49 49 H 1.09001 * 109.47151 * 65.93941 * 20 19 17 50 50 H 0.96999 * 119.99611 * 0.02562 * 21 20 19 51 51 H 0.97005 * 120.00454 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5716 -0.6941 -1.2653 6 6 4.1061 -1.4254 -0.0299 7 7 3.5048 -0.8280 1.1702 8 6 4.2808 -0.3843 2.1789 9 8 3.7725 0.0055 3.2087 10 6 5.7801 -0.3727 2.0271 11 6 6.4180 0.1725 3.3064 12 6 7.9173 0.1848 3.1544 13 6 8.7041 1.2438 2.6464 14 6 9.9843 0.8332 2.6886 15 8 10.0143 -0.4116 3.1918 16 6 8.7641 -0.8082 3.4805 17 6 2.0413 -0.7234 1.2498 18 1 1.6058 -1.7214 1.2982 19 6 1.6511 0.0708 2.4979 20 6 2.1435 1.5128 2.3595 21 7 1.8963 2.2354 3.6097 22 6 2.2569 3.5515 3.7226 23 1 2.7231 4.0571 2.8899 24 6 2.0231 4.2361 4.9074 25 7 1.4545 3.6202 5.9221 26 14 2.5143 6.0318 5.0611 27 1 1.3837 6.8929 4.6305 28 1 2.8551 6.3325 6.4749 29 1 3.6947 6.2976 4.2002 30 1 -0.3633 0.5128 0.8905 31 1 -0.3633 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6979 -1.7573 -1.2350 34 1 1.6589 -0.2246 -2.1388 35 1 3.9346 -1.1887 -2.1663 36 1 3.9161 0.3400 -1.2534 37 1 3.8388 -2.4807 -0.0859 38 1 5.1906 -1.3249 0.0135 39 1 6.1350 -1.3877 1.8486 40 1 6.0551 0.2619 1.1846 41 1 6.0630 1.1876 3.4853 42 1 6.1430 -0.4623 4.1486 43 1 8.3458 2.1991 2.2919 44 1 10.8424 1.4072 2.3715 45 1 8.4857 -1.7632 3.9012 46 1 0.5666 0.0662 2.6071 47 1 2.1067 -0.3860 3.3765 48 1 3.2123 1.5128 2.1450 49 1 1.6096 2.0025 1.5451 50 1 1.4779 1.7812 4.3578 51 1 1.2908 4.0986 6.7499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316678721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:24 Heat of formation + Delta-G solvation = -14.648123 kcal Electronic energy + Delta-G solvation = -30364.004839 eV Core-core repulsion = 26458.174921 eV Total energy + Delta-G solvation = -3905.829919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.42017 -41.86773 -38.74272 -36.93045 -35.79615 -34.97452 -33.98318 -32.58249 -32.31678 -30.35257 -29.59894 -27.57101 -26.73380 -25.62263 -24.45720 -23.59886 -22.44617 -22.22793 -21.27976 -20.70450 -19.73423 -19.07199 -18.37733 -17.67228 -17.05613 -16.90662 -16.70974 -16.53687 -15.80469 -15.68421 -15.54899 -15.20751 -15.13272 -14.95079 -14.49791 -14.39826 -14.25110 -13.76425 -13.65646 -13.48444 -13.28850 -13.18200 -13.08447 -12.98015 -12.90319 -12.70066 -12.51321 -12.37065 -12.31209 -12.08837 -11.91677 -11.84444 -11.68909 -11.58040 -11.37424 -11.15678 -10.82668 -10.58966 -9.76106 -9.39752 -9.37957 -8.86728 -7.92449 -5.18537 0.90036 1.40296 1.44312 1.52311 1.65463 1.82173 2.16338 2.34138 2.55398 3.39385 3.55630 3.81214 3.85611 3.90690 3.92514 4.02568 4.11991 4.16116 4.19473 4.27465 4.32099 4.38835 4.45364 4.58499 4.59258 4.66212 4.68003 4.70514 4.82498 4.86647 4.87749 4.89077 4.94772 4.95955 5.06385 5.14108 5.17508 5.24596 5.27928 5.28364 5.37166 5.37497 5.43478 5.44631 5.54069 5.59000 5.61698 5.88717 6.23156 6.29863 6.62042 7.34070 7.47523 8.17114 8.40678 9.32253 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006504 B = 0.004963 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4304.208952 B = 5640.820229 C = 9080.972797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.133 4.133 6 C 0.103 3.897 7 N -0.611 5.611 8 C 0.491 3.509 9 O -0.543 6.543 10 C -0.116 4.116 11 C -0.029 4.029 12 C -0.192 4.192 13 C -0.235 4.235 14 C -0.034 4.034 15 O -0.186 6.186 16 C -0.039 4.039 17 C 0.166 3.834 18 H 0.085 0.915 19 C -0.125 4.125 20 C 0.184 3.816 21 N -0.735 5.735 22 C -0.235 4.235 23 H 0.064 0.936 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.273 1.273 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.066 0.934 43 H 0.144 0.856 44 H 0.236 0.764 45 H 0.228 0.772 46 H 0.044 0.956 47 H 0.085 0.915 48 H 0.014 0.986 49 H -0.008 1.008 50 H 0.368 0.632 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 -16.300 -18.251 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.069 0.931 4 C -0.145 4.145 5 C -0.171 4.171 6 C -0.018 4.018 7 N -0.345 5.345 8 C 0.280 3.720 9 O -0.420 6.420 10 C -0.155 4.155 11 C -0.067 4.067 12 C -0.193 4.193 13 C -0.254 4.254 14 C -0.101 4.101 15 O -0.082 6.082 16 C -0.106 4.106 17 C 0.062 3.938 18 H 0.103 0.897 19 C -0.162 4.162 20 C 0.058 3.942 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.082 0.918 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.801 3.199 27 H -0.210 1.210 28 H -0.219 1.219 29 H -0.198 1.198 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.162 0.838 44 H 0.252 0.748 45 H 0.244 0.756 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.032 0.968 49 H 0.010 0.990 50 H 0.199 0.801 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.921 -16.118 -17.750 27.236 hybrid contribution -0.560 1.567 0.907 1.895 sum 12.361 -14.551 -16.843 25.460 Atomic orbital electron populations 1.21769 0.94189 1.02534 1.01509 1.21577 0.96422 0.99342 0.95091 0.93094 1.21560 0.95579 1.01155 0.96204 1.21934 0.95805 1.00890 0.98497 1.22020 0.99229 0.97757 0.82838 1.48187 1.05979 1.61393 1.18981 1.21206 0.90521 0.76819 0.83427 1.90899 1.74385 1.46402 1.30363 1.21606 0.89849 1.04678 0.99414 1.19504 0.88818 1.01011 0.97383 1.20506 0.96231 0.95946 1.06619 1.21997 0.94039 1.01402 1.07979 1.24604 0.99742 0.84064 1.01727 1.84075 1.30775 1.29905 1.63397 1.24312 0.80131 1.01429 1.04725 1.21158 0.79864 0.98545 0.94196 0.89726 1.22201 0.98695 0.95604 0.99710 1.20763 0.96022 0.90808 0.86623 1.42454 1.72903 1.09043 1.13214 1.19545 1.31045 0.88505 0.97644 0.91803 1.25546 1.02968 1.02622 0.96030 1.69846 1.50841 1.37404 1.04272 0.85147 0.78006 0.80142 0.76574 1.21008 1.21905 1.19767 0.94581 0.91615 0.90912 0.90183 0.90953 0.87871 0.93107 0.89291 0.88098 0.86174 0.88386 0.94050 0.91491 0.83825 0.74773 0.75598 0.93726 0.89652 0.96782 0.99046 0.80146 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.97 71.98 0.65 -2.64 16 2 C -0.10 -2.54 1.99 -10.71 -0.02 -2.56 16 3 H 0.05 1.57 6.17 -2.39 -0.01 1.55 16 4 C -0.11 -1.70 5.17 30.62 0.16 -1.54 16 5 C -0.13 -1.82 6.08 30.67 0.19 -1.64 16 6 C 0.10 1.49 6.34 86.36 0.55 2.04 16 7 N -0.61 -15.12 2.93 -795.02 -2.33 -17.44 16 8 C 0.49 15.22 6.15 87.66 0.54 15.76 16 9 O -0.54 -23.11 9.97 -3.03 -0.03 -23.14 16 10 C -0.12 -2.70 4.04 29.85 0.12 -2.58 16 11 C -0.03 -0.84 5.02 29.85 0.15 -0.69 16 12 C -0.19 -4.69 5.42 -19.94 -0.11 -4.80 16 13 C -0.24 -5.44 10.87 22.19 0.24 -5.20 16 14 C -0.03 -0.62 12.09 66.97 0.81 0.19 16 15 O -0.19 -3.73 10.65 -2.53 -0.03 -3.76 16 16 C -0.04 -0.77 12.01 66.97 0.80 0.03 16 17 C 0.17 4.56 2.66 44.97 0.12 4.68 16 18 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 19 C -0.12 -4.86 4.20 30.59 0.13 -4.73 16 20 C 0.18 8.74 4.40 86.38 0.38 9.12 16 21 N -0.74 -43.41 5.59 -343.44 -1.92 -45.33 16 22 C -0.24 -14.77 9.99 84.04 0.84 -13.93 16 23 H 0.06 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 25 N -0.97 -64.93 13.06 21.65 0.28 -64.64 16 26 Si 0.97 50.05 29.55 68.60 2.03 52.08 16 27 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 29 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 30 H 0.04 1.04 6.74 -2.39 -0.02 1.02 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.12 5.94 -2.39 -0.01 1.11 16 39 H 0.12 1.93 7.70 -2.39 -0.02 1.91 16 40 H 0.10 2.10 7.94 -2.39 -0.02 2.08 16 41 H 0.04 1.55 8.10 -2.38 -0.02 1.54 16 42 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.24 2.21 8.06 -2.91 -0.02 2.19 16 45 H 0.23 2.94 8.06 -2.91 -0.02 2.91 16 46 H 0.04 1.74 6.90 -2.39 -0.02 1.73 16 47 H 0.09 3.82 5.63 -26.89 -0.15 3.67 16 48 H 0.01 0.71 5.20 -2.38 -0.01 0.70 16 49 H -0.01 -0.39 6.59 -2.39 -0.02 -0.40 16 50 H 0.37 23.33 7.67 -92.71 -0.71 22.62 16 51 H 0.25 16.01 8.31 -92.70 -0.77 15.24 16 Total: -1.00 -83.33 392.09 4.09 -79.24 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.07 Total: 36.07 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 6.01 Total: -13.07 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -3.96 Total: -127.42 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.06 Total: -26.90 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.03 Total: 52.08 kcal Total: -83.33 4.09 -79.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316678721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.596 kcal (2) G-P(sol) polarization free energy of solvation -83.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds