Wall clock time and date at job start Tue Mar 31 2020 18:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.03835 * 2 1 4 4 C 1.54505 * 110.02641 * 238.90853 * 2 1 3 5 5 C 1.55956 * 102.74908 * 218.17262 * 4 2 1 6 6 H 1.09003 * 112.77511 * 156.58201 * 5 4 2 7 7 C 1.53015 * 107.23876 * 280.88250 * 5 4 2 8 8 C 1.52678 * 110.69063 * 163.47681 * 7 5 4 9 9 C 1.53242 * 108.68077 * 298.03916 * 8 7 5 10 10 C 1.50243 * 108.37370 * 62.72070 * 9 8 7 11 11 C 1.51182 * 112.71878 * 301.21495 * 10 9 8 12 12 H 1.08996 * 108.58501 * 172.89359 * 11 10 9 13 13 N 1.46523 * 113.00791 * 293.30570 * 11 10 9 14 14 C 1.34781 * 126.02118 * 329.20693 * 13 11 10 15 15 O 1.21341 * 120.00058 * 359.21411 * 14 13 11 16 16 C 1.49445 * 119.99665 * 179.21187 * 14 13 11 17 17 O 1.21349 * 120.00594 * 353.94532 * 16 14 13 18 18 N 1.34782 * 120.00080 * 173.94431 * 16 14 13 19 19 C 1.46492 * 120.00400 * 183.69986 * 18 16 14 20 20 C 1.52993 * 109.47429 * 175.60214 * 19 18 16 21 21 C 1.50702 * 115.55378 * 65.85195 * 20 19 18 22 22 H 1.08001 * 119.99793 * 267.61311 * 21 20 19 23 23 C 1.37870 * 120.00454 * 87.60846 * 21 20 19 24 24 N 1.31520 * 119.99503 * 4.10014 * 23 21 20 25 25 Si 1.86794 * 120.00456 * 184.10224 * 23 21 20 26 26 H 1.48491 * 109.47254 * 89.99837 * 25 23 21 27 27 H 1.48500 * 109.47254 * 210.00379 * 25 23 21 28 28 H 1.48502 * 109.47119 * 329.99866 * 25 23 21 29 29 C 1.53006 * 117.49639 * 280.18501 * 20 19 18 30 30 C 1.53004 * 117.50336 * 211.52434 * 20 19 18 31 31 H 1.09000 * 109.46991 * 289.01372 * 1 2 3 32 32 H 1.09006 * 109.47027 * 49.01180 * 1 2 3 33 33 H 1.08999 * 109.47444 * 169.01080 * 1 2 3 34 34 H 1.09006 * 110.91510 * 99.76274 * 4 2 1 35 35 H 1.08992 * 110.69528 * 336.48260 * 4 2 1 36 36 H 1.08999 * 109.23208 * 283.78986 * 7 5 4 37 37 H 1.09006 * 109.23147 * 43.20672 * 7 5 4 38 38 H 1.09003 * 109.60305 * 57.79842 * 8 7 5 39 39 H 1.09004 * 109.59929 * 178.27983 * 8 7 5 40 40 H 1.08996 * 109.67856 * 182.91893 * 9 8 7 41 41 H 1.09005 * 109.67512 * 303.45317 * 9 8 7 42 42 H 1.08997 * 108.62385 * 180.15875 * 10 9 8 43 43 H 1.09004 * 108.12403 * 61.92642 * 10 9 8 44 44 H 0.97000 * 119.99464 * 3.97413 * 18 16 14 45 45 H 1.09005 * 109.46927 * 295.60058 * 19 18 16 46 46 H 1.09001 * 109.47100 * 55.59796 * 19 18 16 47 47 H 0.97004 * 119.99907 * 185.01674 * 24 23 21 48 48 H 1.09000 * 117.49965 * 359.97438 * 29 20 19 49 49 H 1.09000 * 117.50161 * 145.01821 * 29 20 19 50 50 H 1.08991 * 117.50043 * 214.97530 * 30 20 19 51 51 H 1.09004 * 117.49248 * 359.97242 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9035 1.0240 0.0000 4 6 2.0591 -0.7496 -1.2431 5 6 3.3005 -1.5102 -0.6838 6 1 3.5621 -2.3855 -1.2784 7 6 4.4476 -0.5015 -0.5938 8 6 5.5619 -1.0308 0.3058 9 6 5.0015 -1.2250 1.7188 10 6 3.9164 -2.2624 1.6594 11 6 2.7933 -1.8797 0.7224 12 1 2.1121 -2.7258 0.6328 13 7 2.0317 -0.7170 1.1861 14 6 1.8220 -0.3680 2.4709 15 8 2.2719 -1.0518 3.3666 16 6 1.0352 0.8613 2.7923 17 8 0.6792 1.6042 1.9012 18 7 0.7210 1.1450 4.0719 19 6 -0.1184 2.3053 4.3802 20 6 -0.4123 2.3379 5.8812 21 6 0.7798 2.5753 6.7721 22 1 1.3310 1.7367 7.1714 23 6 1.1669 3.8628 7.0772 24 7 0.4492 4.8820 6.6578 25 14 2.7105 4.1598 8.0863 26 1 3.8783 4.2890 7.1782 27 1 2.5547 5.4095 8.8732 28 1 2.9257 3.0170 9.0098 29 6 -1.5132 1.4137 6.4057 30 6 -1.7542 2.9233 6.3260 31 1 -0.3633 0.3348 0.9716 32 1 -0.3633 0.6741 -0.7758 33 1 -0.3634 -1.0088 -0.1959 34 1 2.3546 -0.0486 -2.0238 35 1 1.3126 -1.4502 -1.6171 36 1 4.8467 -0.3217 -1.5920 37 1 4.0704 0.4354 -0.1837 38 1 5.9208 -1.9851 -0.0797 39 1 6.3818 -0.3130 0.3330 40 1 5.7972 -1.5537 2.3872 41 1 4.5829 -0.2856 2.0799 42 1 3.5128 -2.4018 2.6623 43 1 4.3604 -3.1986 1.3209 44 1 1.0541 0.5831 4.7890 45 1 0.4034 3.2180 4.0922 46 1 -1.0554 2.2328 3.8279 47 1 0.7593 5.7886 6.8094 48 1 -2.0283 0.7829 5.6813 49 1 -1.3754 0.9777 7.3952 50 1 -1.7747 3.4798 7.2629 51 1 -2.4273 3.2857 5.5490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324126610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:54 Heat of formation + Delta-G solvation = -48.538811 kcal Electronic energy + Delta-G solvation = -30779.548890 eV Core-core repulsion = 26872.249361 eV Total energy + Delta-G solvation = -3907.299529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29072 -39.30232 -37.72044 -36.80192 -35.76121 -33.49682 -32.47476 -31.95734 -30.81747 -29.85186 -27.05074 -25.92190 -25.46789 -24.15996 -22.69704 -21.70419 -21.46987 -21.09193 -19.80531 -19.48877 -18.58681 -17.25782 -16.41629 -16.22735 -16.04279 -15.35735 -15.15883 -15.01742 -14.72308 -14.62082 -14.32302 -14.11299 -13.76584 -13.41439 -13.09871 -12.96197 -12.78838 -12.67285 -12.48431 -12.35336 -12.00683 -11.85115 -11.68169 -11.63201 -11.60318 -11.33950 -11.03959 -10.93429 -10.89136 -10.65526 -10.58167 -10.50952 -10.25065 -10.23921 -10.05457 -9.57651 -9.09724 -8.99332 -8.67173 -8.49984 -8.34043 -8.16213 -6.09788 -4.18630 1.82605 2.59704 3.27425 3.34713 3.37500 3.60292 3.80523 4.26475 4.35991 4.37165 4.51702 4.80629 4.89744 4.94912 4.98741 5.10195 5.18619 5.19878 5.27951 5.35316 5.36704 5.41644 5.46639 5.49636 5.62639 5.72345 5.76301 5.83916 5.89041 5.95577 6.03185 6.08173 6.11544 6.12925 6.20899 6.28547 6.33395 6.37774 6.39532 6.49082 6.56829 6.67461 6.75759 7.04723 7.09234 7.32355 7.38500 7.51816 7.80289 7.81934 8.19732 8.31439 8.55264 8.83753 9.49206 10.97974 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.003478 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.834697 B = 8049.750592 C = 9003.929987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.089 0.911 4 C -0.130 4.130 5 C -0.097 4.097 6 H 0.098 0.902 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.113 4.113 10 C -0.137 4.137 11 C 0.147 3.853 12 H 0.067 0.933 13 N -0.584 5.584 14 C 0.525 3.475 15 O -0.518 6.518 16 C 0.492 3.508 17 O -0.528 6.528 18 N -0.668 5.668 19 C 0.161 3.839 20 C 0.020 3.980 21 C -0.499 4.499 22 H 0.061 0.939 23 C 0.074 3.926 24 N -0.876 5.876 25 Si 0.889 3.111 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.273 1.273 29 C -0.210 4.210 30 C -0.137 4.137 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.413 0.587 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.261 0.739 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -12.538 -16.310 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.107 0.893 4 C -0.168 4.168 5 C -0.116 4.116 6 H 0.116 0.884 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.151 4.151 10 C -0.175 4.175 11 C 0.044 3.956 12 H 0.085 0.915 13 N -0.319 5.319 14 C 0.309 3.691 15 O -0.394 6.394 16 C 0.272 3.728 17 O -0.407 6.407 18 N -0.317 5.317 19 C 0.039 3.961 20 C 0.019 3.981 21 C -0.536 4.536 22 H 0.079 0.921 23 C -0.130 4.130 24 N -0.512 5.512 25 Si 0.716 3.284 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.197 1.197 29 C -0.248 4.248 30 C -0.175 4.175 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.249 0.751 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.623 -12.119 -16.271 20.808 hybrid contribution 0.947 0.141 0.770 1.229 sum 5.571 -11.978 -15.501 20.366 Atomic orbital electron populations 1.22341 0.94205 1.00776 1.04712 1.21783 0.95046 0.96561 0.83191 0.89343 1.23096 0.97263 0.99578 0.96835 1.22438 0.95193 0.98822 0.95154 0.88434 1.21519 0.95150 0.98665 0.99722 1.21558 0.97547 1.00918 0.95702 1.20992 0.97813 0.99874 0.96381 1.21060 0.95383 0.98771 1.02262 1.21102 0.93132 0.87990 0.93406 0.91513 1.48165 1.51167 1.27663 1.04879 1.20115 0.81247 0.86127 0.81635 1.90667 1.50188 1.53123 1.45401 1.19902 0.81944 0.86530 0.84420 1.90684 1.53983 1.50065 1.45991 1.45895 1.49277 1.30110 1.06452 1.21187 0.91853 0.86534 0.96532 1.19036 0.89892 0.99070 0.90098 1.20385 1.11807 0.92111 1.29343 0.92073 1.24967 0.96431 0.96194 0.95380 1.70007 1.36269 0.98502 1.46393 0.86639 0.83573 0.77777 0.80381 1.20591 1.21218 1.19738 1.23044 1.06926 0.93448 1.01365 1.22464 0.99699 0.93112 1.02204 0.89983 0.91714 0.93570 0.89898 0.90568 0.91928 0.91571 0.92043 0.92122 0.91825 0.92153 0.88323 0.91674 0.75083 0.90909 0.93613 0.92893 0.91727 0.90238 0.89257 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.71 37.16 0.32 -1.68 16 2 C 0.14 1.64 2.08 -66.65 -0.14 1.50 16 3 H 0.09 1.20 7.14 -51.93 -0.37 0.83 16 4 C -0.13 -1.10 5.86 -24.36 -0.14 -1.24 16 5 C -0.10 -0.83 3.63 -88.52 -0.32 -1.15 16 6 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.11 -1.02 4.93 -26.89 -0.13 -1.16 16 8 C -0.12 -1.11 5.92 -26.77 -0.16 -1.27 16 9 C -0.11 -1.31 5.86 -27.98 -0.16 -1.48 16 10 C -0.14 -1.58 4.61 -29.02 -0.13 -1.71 16 11 C 0.15 1.62 2.90 -68.32 -0.20 1.43 16 12 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 13 N -0.58 -7.91 2.80 -157.97 -0.44 -8.35 16 14 C 0.52 8.79 7.09 -11.59 -0.08 8.71 16 15 O -0.52 -9.39 14.04 5.50 0.08 -9.31 16 16 C 0.49 9.17 7.12 -11.58 -0.08 9.09 16 17 O -0.53 -10.23 12.00 5.50 0.07 -10.16 16 18 N -0.67 -13.29 5.48 -60.74 -0.33 -13.62 16 19 C 0.16 3.54 5.50 -4.05 -0.02 3.52 16 20 C 0.02 0.46 1.51 -155.66 -0.23 0.23 16 21 C -0.50 -12.95 8.64 -34.44 -0.30 -13.24 16 22 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 23 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 24 N -0.88 -24.05 12.47 55.43 0.69 -23.36 16 25 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 29 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 30 C -0.14 -3.10 9.02 -26.69 -0.24 -3.34 16 31 H 0.08 1.27 4.92 -51.93 -0.26 1.01 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 34 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 35 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.73 7.02 -51.93 -0.36 0.37 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.87 7.62 -51.93 -0.40 0.47 16 42 H 0.10 1.40 5.65 -51.93 -0.29 1.11 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.41 8.23 7.84 -40.82 -0.32 7.91 16 45 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 46 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 50 H 0.09 2.19 8.06 -51.93 -0.42 1.77 16 51 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -27.86 390.17 -10.15 -38.01 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.68 Total: 9.73 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.39 Total: -4.60 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.08 Total: -45.33 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.14 Total: -19.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -27.86 -10.15 -38.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324126610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.531 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds