Wall clock time and date at job start Tue Mar 31 2020 18:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.89340 * 2 1 4 4 C 1.54484 * 109.90185 * 238.94055 * 2 1 3 5 5 C 1.55958 * 102.65686 * 263.20954 * 4 2 1 6 6 H 1.08998 * 112.78015 * 202.49416 * 5 4 2 7 7 C 1.53020 * 106.57820 * 78.67135 * 5 4 2 8 8 C 1.52674 * 110.70008 * 196.87599 * 7 5 4 9 9 C 1.53248 * 108.68021 * 61.95054 * 8 7 5 10 10 C 1.52871 * 108.41372 * 296.80581 * 9 8 7 11 11 C 1.51182 * 111.24209 * 59.22322 * 10 9 8 12 12 H 1.08998 * 108.09513 * 186.44607 * 11 10 9 13 13 N 1.46525 * 113.00325 * 66.37044 * 11 10 9 14 14 C 1.34776 * 126.01625 * 30.19714 * 13 11 10 15 15 O 1.21350 * 120.00085 * 1.50494 * 14 13 11 16 16 C 1.49453 * 120.00024 * 181.51433 * 14 13 11 17 17 O 1.21350 * 119.99788 * 353.86858 * 16 14 13 18 18 N 1.34772 * 120.00197 * 173.87361 * 16 14 13 19 19 C 1.46495 * 119.99977 * 175.08402 * 18 16 14 20 20 C 1.53001 * 109.47166 * 184.99982 * 19 18 16 21 21 C 1.50699 * 115.55355 * 279.51101 * 20 19 18 22 22 H 1.07998 * 120.00541 * 94.94157 * 21 20 19 23 23 C 1.37885 * 119.99955 * 274.94639 * 21 20 19 24 24 N 1.31520 * 119.99366 * 5.26231 * 23 21 20 25 25 Si 1.86797 * 120.00348 * 185.26091 * 23 21 20 26 26 H 1.48499 * 109.46995 * 89.99811 * 25 23 21 27 27 H 1.48498 * 109.47245 * 209.99920 * 25 23 21 28 28 H 1.48510 * 109.46747 * 330.00061 * 25 23 21 29 29 C 1.53004 * 117.50070 * 133.79804 * 20 19 18 30 30 C 1.53005 * 117.49796 * 65.17553 * 20 19 18 31 31 H 1.08996 * 109.47037 * 148.60999 * 1 2 3 32 32 H 1.09001 * 109.47059 * 268.61342 * 1 2 3 33 33 H 1.09001 * 109.46873 * 28.60736 * 1 2 3 34 34 H 1.08998 * 110.78012 * 144.91863 * 4 2 1 35 35 H 1.09001 * 110.77178 * 21.49608 * 4 2 1 36 36 H 1.09004 * 109.22753 * 317.19201 * 7 5 4 37 37 H 1.08994 * 109.23269 * 76.55899 * 7 5 4 38 38 H 1.09004 * 109.59982 * 181.70649 * 8 7 5 39 39 H 1.08996 * 109.60517 * 302.19094 * 8 7 5 40 40 H 1.08999 * 109.67761 * 177.07161 * 9 8 7 41 41 H 1.09004 * 109.70402 * 56.55138 * 9 8 7 42 42 H 1.09003 * 109.12304 * 298.76837 * 10 9 8 43 43 H 1.08995 * 109.12359 * 179.67318 * 10 9 8 44 44 H 0.97009 * 120.00030 * 355.07771 * 18 16 14 45 45 H 1.08993 * 109.47300 * 304.99601 * 19 18 16 46 46 H 1.08995 * 109.47484 * 65.00538 * 19 18 16 47 47 H 0.97002 * 119.99179 * 185.00170 * 24 23 21 48 48 H 1.09001 * 117.49484 * 0.02562 * 29 20 19 49 49 H 1.09000 * 117.49941 * 145.02023 * 29 20 19 50 50 H 1.08998 * 117.50119 * 214.97852 * 30 20 19 51 51 H 1.09000 * 117.49678 * 0.02562 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0559 -0.7494 -1.2443 5 6 2.3414 -2.1780 -0.6875 6 1 3.0634 -2.7292 -1.2899 7 6 0.9900 -2.8904 -0.5994 8 6 1.0847 -4.1174 0.3041 9 6 1.4616 -3.6587 1.7169 10 6 2.8466 -3.0139 1.6618 11 6 2.8634 -1.8320 0.7192 12 1 3.8927 -1.4847 0.6300 13 7 2.0353 -0.7164 1.1848 14 6 1.7807 -0.4009 2.4702 15 8 2.2781 -1.0526 3.3649 16 6 0.8857 0.7514 2.7936 17 8 0.4777 1.4707 1.9055 18 7 0.5318 0.9918 4.0716 19 6 -0.2561 2.1819 4.4020 20 6 -0.4139 2.2837 5.9204 21 6 -1.4863 1.4126 6.5223 22 1 -1.2326 0.4418 6.9218 23 6 -2.7916 1.8550 6.5630 24 7 -3.1195 2.9900 5.9851 25 14 -4.0942 0.8424 7.4389 26 1 -4.1703 1.2583 8.8624 27 1 -5.4112 1.0606 6.7884 28 1 -3.7366 -0.5970 7.3622 29 6 -0.1663 3.6483 6.5666 30 6 0.8511 2.5200 6.7479 31 1 -0.3633 -0.8772 -0.5353 32 1 -0.3633 -0.0249 1.0274 33 1 -0.3633 0.9022 -0.4921 34 1 2.9716 -0.2888 -1.6148 35 1 1.2958 -0.7836 -2.0249 36 1 0.2474 -2.2027 -0.1945 37 1 0.6828 -3.2023 -1.5975 38 1 0.1217 -4.6276 0.3300 39 1 1.8495 -4.7940 -0.0769 40 1 1.4829 -4.5173 2.3881 41 1 0.7322 -2.9317 2.0742 42 1 3.5714 -3.7531 1.3207 43 1 3.1240 -2.6778 2.6609 44 1 0.7987 0.3768 4.7727 45 1 0.2539 3.0702 4.0295 46 1 -1.2398 2.1065 3.9388 47 1 -4.0207 3.3374 6.0752 48 1 0.1086 4.4736 5.9098 49 1 -0.7793 3.9163 7.4271 50 1 0.9075 2.0459 7.7278 51 1 1.7958 2.6035 6.2105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324126613.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:58 Heat of formation + Delta-G solvation = -39.541508 kcal Electronic energy + Delta-G solvation = -30906.716835 eV Core-core repulsion = 26999.807458 eV Total energy + Delta-G solvation = -3906.909377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.37700 -39.31022 -37.76526 -36.81665 -35.52981 -33.48087 -32.62194 -31.97392 -30.84848 -29.48348 -27.04353 -26.25343 -25.49111 -24.20246 -22.29494 -21.92353 -21.34430 -21.15141 -19.97766 -19.47709 -18.51396 -17.26555 -16.60810 -16.18186 -15.98913 -15.51428 -15.07701 -14.97462 -14.69931 -14.59647 -14.26467 -13.99080 -13.81055 -13.41808 -13.34958 -12.83178 -12.71455 -12.61370 -12.49071 -12.19897 -12.00726 -11.94043 -11.83491 -11.65051 -11.57601 -11.18689 -11.07128 -10.95168 -10.89776 -10.70380 -10.54690 -10.29556 -10.26252 -10.10673 -10.04433 -9.66830 -9.01248 -8.99725 -8.67938 -8.51054 -8.32240 -8.22401 -6.10673 -4.18760 1.81616 2.59038 3.26335 3.34101 3.36661 3.60704 3.79105 4.27968 4.35733 4.38362 4.52548 4.79976 4.88402 4.92467 5.02237 5.13847 5.18485 5.18671 5.25663 5.32227 5.35044 5.38319 5.49570 5.51092 5.63003 5.72143 5.81838 5.87979 5.89105 5.95420 6.04142 6.07496 6.10871 6.16480 6.23738 6.30433 6.33499 6.36324 6.47438 6.52325 6.58280 6.66214 6.75160 7.03691 7.04974 7.36682 7.38040 7.44269 7.79320 7.80942 8.17991 8.31521 8.53940 8.83759 9.48849 10.97786 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.003318 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.204311 B = 8436.321950 C = 8817.773110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.085 0.915 4 C -0.131 4.131 5 C -0.095 4.095 6 H 0.097 0.903 7 C -0.130 4.130 8 C -0.119 4.119 9 C -0.113 4.113 10 C -0.137 4.137 11 C 0.145 3.855 12 H 0.065 0.935 13 N -0.583 5.583 14 C 0.525 3.475 15 O -0.519 6.519 16 C 0.491 3.509 17 O -0.525 6.525 18 N -0.673 5.673 19 C 0.161 3.839 20 C 0.025 3.975 21 C -0.499 4.499 22 H 0.061 0.939 23 C 0.073 3.927 24 N -0.875 5.875 25 Si 0.889 3.111 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.273 1.273 29 C -0.145 4.145 30 C -0.208 4.208 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.410 0.590 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.261 0.739 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.690 -9.856 -14.708 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.114 4.114 6 H 0.115 0.885 7 C -0.167 4.167 8 C -0.156 4.156 9 C -0.150 4.150 10 C -0.174 4.174 11 C 0.042 3.958 12 H 0.083 0.917 13 N -0.319 5.319 14 C 0.309 3.691 15 O -0.395 6.395 16 C 0.271 3.729 17 O -0.403 6.403 18 N -0.323 5.323 19 C 0.039 3.961 20 C 0.024 3.976 21 C -0.537 4.537 22 H 0.079 0.921 23 C -0.131 4.131 24 N -0.511 5.511 25 Si 0.717 3.283 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.198 1.198 29 C -0.183 4.183 30 C -0.246 4.246 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.246 0.754 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.460 -9.523 -14.838 20.501 hybrid contribution -0.666 -0.569 0.791 1.180 sum 9.794 -10.092 -14.047 19.877 Atomic orbital electron populations 1.22511 0.93853 1.01217 1.03949 1.21762 0.95450 0.96054 0.83243 0.89695 1.23099 1.01829 0.95131 0.96830 1.22402 0.98041 0.95932 0.94986 0.88466 1.21873 0.97193 0.97786 0.99835 1.21533 1.01147 0.97271 0.95674 1.21449 0.97099 1.00144 0.96334 1.21559 0.97881 0.95941 1.02053 1.21104 0.93982 0.87235 0.93469 0.91665 1.48219 1.49324 1.29455 1.04867 1.20143 0.82191 0.85190 0.81625 1.90662 1.51390 1.51951 1.45522 1.19894 0.82594 0.86093 0.84364 1.90740 1.54745 1.49119 1.45692 1.45984 1.51926 1.27121 1.07226 1.21280 0.94322 0.83503 0.96978 1.19047 0.93493 0.96872 0.88153 1.20418 0.90833 1.02615 1.39788 0.92064 1.24973 0.98175 0.95335 0.94588 1.70011 1.19943 1.19966 1.41186 0.86633 0.81130 0.80782 0.79770 1.20595 1.21220 1.19774 1.22512 1.01229 0.91560 1.03012 1.22992 0.93365 1.06194 1.02006 0.92751 0.90762 0.91515 0.90757 0.89650 0.89898 0.92071 0.92155 0.92174 0.92001 0.92093 0.91541 0.88303 0.75418 0.93621 0.90330 0.92872 0.91650 0.89720 0.90136 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 7.37 37.16 0.27 -1.78 16 2 C 0.14 1.65 2.71 -66.66 -0.18 1.47 16 3 H 0.09 1.10 7.69 -51.93 -0.40 0.70 16 4 C -0.13 -1.11 5.90 -24.37 -0.14 -1.25 16 5 C -0.09 -0.80 3.68 -88.51 -0.33 -1.13 16 6 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.13 -1.18 4.78 -26.89 -0.13 -1.30 16 8 C -0.12 -1.11 5.92 -26.77 -0.16 -1.26 16 9 C -0.11 -1.30 5.88 -26.67 -0.16 -1.45 16 10 C -0.14 -1.55 4.83 -27.71 -0.13 -1.69 16 11 C 0.15 1.60 2.85 -68.32 -0.19 1.40 16 12 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 13 N -0.58 -7.86 2.76 -157.98 -0.44 -8.29 16 14 C 0.52 8.68 6.89 -11.58 -0.08 8.60 16 15 O -0.52 -9.24 14.05 5.50 0.08 -9.16 16 16 C 0.49 9.09 6.96 -11.59 -0.08 9.01 16 17 O -0.52 -10.18 12.03 5.50 0.07 -10.12 16 18 N -0.67 -13.26 5.49 -60.74 -0.33 -13.60 16 19 C 0.16 3.59 5.57 -4.04 -0.02 3.56 16 20 C 0.03 0.59 1.34 -155.66 -0.21 0.38 16 21 C -0.50 -12.96 8.82 -34.44 -0.30 -13.27 16 22 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 23 C 0.07 1.94 5.40 -17.81 -0.10 1.84 16 24 N -0.88 -24.00 12.90 55.43 0.71 -23.28 16 25 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 C -0.15 -3.27 9.36 -26.73 -0.25 -3.52 16 30 C -0.21 -4.33 9.91 -26.73 -0.26 -4.60 16 31 H 0.05 0.61 5.20 -51.93 -0.27 0.34 16 32 H 0.07 1.21 5.10 -51.93 -0.26 0.94 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.63 7.55 -51.93 -0.39 0.24 16 36 H 0.08 0.90 4.08 -51.93 -0.21 0.69 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.86 7.51 -51.93 -0.39 0.47 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.38 5.65 -51.93 -0.29 1.09 16 44 H 0.41 7.97 7.99 -40.82 -0.33 7.65 16 45 H 0.05 1.00 7.94 -51.93 -0.41 0.59 16 46 H 0.08 1.97 8.12 -51.93 -0.42 1.55 16 47 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 48 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 49 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 50 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 51 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -27.81 385.02 -10.01 -37.82 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.42 Total: 10.19 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.46 Total: -4.98 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.05 Total: -45.17 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.14 Total: -19.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.81 -10.01 -37.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324126613.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.720 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds