Wall clock time and date at job start Tue Mar 31 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.89340 * 2 1 4 4 C 1.54484 * 109.90185 * 238.94055 * 2 1 3 5 5 C 1.55958 * 102.65686 * 263.20954 * 4 2 1 6 6 H 1.08998 * 112.78015 * 202.49416 * 5 4 2 7 7 C 1.53020 * 106.57820 * 78.67135 * 5 4 2 8 8 C 1.52674 * 110.70008 * 196.87599 * 7 5 4 9 9 C 1.53248 * 108.68021 * 61.95054 * 8 7 5 10 10 C 1.52871 * 108.41372 * 296.80581 * 9 8 7 11 11 C 1.51182 * 111.24209 * 59.22322 * 10 9 8 12 12 H 1.08998 * 108.09513 * 186.44607 * 11 10 9 13 13 N 1.46525 * 113.00325 * 66.37044 * 11 10 9 14 14 C 1.34776 * 126.01625 * 30.19714 * 13 11 10 15 15 O 1.21350 * 120.00085 * 1.50494 * 14 13 11 16 16 C 1.49453 * 120.00024 * 181.51433 * 14 13 11 17 17 O 1.21350 * 119.99788 * 353.86858 * 16 14 13 18 18 N 1.34772 * 120.00197 * 173.87361 * 16 14 13 19 19 C 1.46495 * 119.99977 * 175.08402 * 18 16 14 20 20 C 1.53001 * 109.47166 * 184.99982 * 19 18 16 21 21 C 1.50699 * 115.55355 * 279.51101 * 20 19 18 22 22 H 1.07998 * 120.00541 * 94.94157 * 21 20 19 23 23 C 1.37885 * 119.99955 * 274.94639 * 21 20 19 24 24 N 1.31520 * 119.99366 * 5.26231 * 23 21 20 25 25 Si 1.86797 * 120.00348 * 185.26091 * 23 21 20 26 26 H 1.48499 * 109.46995 * 89.99811 * 25 23 21 27 27 H 1.48498 * 109.47245 * 209.99920 * 25 23 21 28 28 H 1.48510 * 109.46747 * 330.00061 * 25 23 21 29 29 C 1.53004 * 117.50070 * 133.79804 * 20 19 18 30 30 C 1.53005 * 117.49796 * 65.17553 * 20 19 18 31 31 H 1.08996 * 109.47037 * 148.60999 * 1 2 3 32 32 H 1.09001 * 109.47059 * 268.61342 * 1 2 3 33 33 H 1.09001 * 109.46873 * 28.60736 * 1 2 3 34 34 H 1.08998 * 110.78012 * 144.91863 * 4 2 1 35 35 H 1.09001 * 110.77178 * 21.49608 * 4 2 1 36 36 H 1.09004 * 109.22753 * 317.19201 * 7 5 4 37 37 H 1.08994 * 109.23269 * 76.55899 * 7 5 4 38 38 H 1.09004 * 109.59982 * 181.70649 * 8 7 5 39 39 H 1.08996 * 109.60517 * 302.19094 * 8 7 5 40 40 H 1.08999 * 109.67761 * 177.07161 * 9 8 7 41 41 H 1.09004 * 109.70402 * 56.55138 * 9 8 7 42 42 H 1.09003 * 109.12304 * 298.76837 * 10 9 8 43 43 H 1.08995 * 109.12359 * 179.67318 * 10 9 8 44 44 H 0.97009 * 120.00030 * 355.07771 * 18 16 14 45 45 H 1.08993 * 109.47300 * 304.99601 * 19 18 16 46 46 H 1.08995 * 109.47484 * 65.00538 * 19 18 16 47 47 H 0.97002 * 119.99179 * 185.00170 * 24 23 21 48 48 H 1.09001 * 117.49484 * 0.02562 * 29 20 19 49 49 H 1.09000 * 117.49941 * 145.02023 * 29 20 19 50 50 H 1.08998 * 117.50119 * 214.97852 * 30 20 19 51 51 H 1.09000 * 117.49678 * 0.02562 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0559 -0.7494 -1.2443 5 6 2.3414 -2.1780 -0.6875 6 1 3.0634 -2.7292 -1.2899 7 6 0.9900 -2.8904 -0.5994 8 6 1.0847 -4.1174 0.3041 9 6 1.4616 -3.6587 1.7169 10 6 2.8466 -3.0139 1.6618 11 6 2.8634 -1.8320 0.7192 12 1 3.8927 -1.4847 0.6300 13 7 2.0353 -0.7164 1.1848 14 6 1.7807 -0.4009 2.4702 15 8 2.2781 -1.0526 3.3649 16 6 0.8857 0.7514 2.7936 17 8 0.4777 1.4707 1.9055 18 7 0.5318 0.9918 4.0716 19 6 -0.2561 2.1819 4.4020 20 6 -0.4139 2.2837 5.9204 21 6 -1.4863 1.4126 6.5223 22 1 -1.2326 0.4418 6.9218 23 6 -2.7916 1.8550 6.5630 24 7 -3.1195 2.9900 5.9851 25 14 -4.0942 0.8424 7.4389 26 1 -4.1703 1.2583 8.8624 27 1 -5.4112 1.0606 6.7884 28 1 -3.7366 -0.5970 7.3622 29 6 -0.1663 3.6483 6.5666 30 6 0.8511 2.5200 6.7479 31 1 -0.3633 -0.8772 -0.5353 32 1 -0.3633 -0.0249 1.0274 33 1 -0.3633 0.9022 -0.4921 34 1 2.9716 -0.2888 -1.6148 35 1 1.2958 -0.7836 -2.0249 36 1 0.2474 -2.2027 -0.1945 37 1 0.6828 -3.2023 -1.5975 38 1 0.1217 -4.6276 0.3300 39 1 1.8495 -4.7940 -0.0769 40 1 1.4829 -4.5173 2.3881 41 1 0.7322 -2.9317 2.0742 42 1 3.5714 -3.7531 1.3207 43 1 3.1240 -2.6778 2.6609 44 1 0.7987 0.3768 4.7727 45 1 0.2539 3.0702 4.0295 46 1 -1.2398 2.1065 3.9388 47 1 -4.0207 3.3374 6.0752 48 1 0.1086 4.4736 5.9098 49 1 -0.7793 3.9163 7.4271 50 1 0.9075 2.0459 7.7278 51 1 1.7958 2.6035 6.2105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324126613.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:57 Heat of formation + Delta-G solvation = -54.829342 kcal Electronic energy + Delta-G solvation = -30907.379765 eV Core-core repulsion = 26999.807458 eV Total energy + Delta-G solvation = -3907.572307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.45821 -40.64714 -39.09868 -38.54991 -36.50019 -35.05520 -33.98676 -33.59727 -31.75751 -30.43752 -28.71215 -27.43041 -27.12379 -25.50818 -23.34699 -22.98721 -22.81506 -22.19815 -21.36551 -21.02821 -19.80886 -18.59674 -17.95101 -17.72991 -17.22135 -16.88220 -16.60195 -16.31595 -16.06595 -15.83239 -15.50355 -15.38883 -15.04556 -14.60499 -14.49556 -14.35052 -13.96526 -13.74857 -13.52364 -13.41675 -13.31806 -13.06008 -13.02376 -12.95005 -12.80988 -12.72736 -12.44615 -12.40742 -12.21644 -12.06979 -12.06670 -11.66723 -11.52380 -11.05247 -11.03105 -10.91475 -10.84863 -10.51280 -10.38020 -10.06833 -9.98456 -9.71890 -8.14195 -6.26897 0.41518 1.32627 1.39979 1.42336 1.50534 2.19042 2.40535 2.50879 3.14804 3.26241 3.51208 3.55877 3.62850 3.77514 4.00036 4.08774 4.16350 4.18320 4.33631 4.35266 4.43192 4.50308 4.51736 4.56262 4.56292 4.62326 4.65333 4.67997 4.85965 4.89384 4.95893 4.97493 5.02926 5.08013 5.09249 5.16046 5.22919 5.23509 5.24798 5.32830 5.35337 5.38061 5.42641 5.55086 5.60550 5.61494 5.64828 5.74111 6.16704 6.33095 6.36189 6.75100 6.81530 7.03949 7.42934 8.93955 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.003318 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.204311 B = 8436.321950 C = 8817.773110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.082 4.082 6 H 0.133 0.867 7 C -0.131 4.131 8 C -0.113 4.113 9 C -0.114 4.114 10 C -0.134 4.134 11 C 0.134 3.866 12 H 0.078 0.922 13 N -0.575 5.575 14 C 0.524 3.476 15 O -0.538 6.538 16 C 0.488 3.512 17 O -0.535 6.535 18 N -0.676 5.676 19 C 0.181 3.819 20 C 0.001 3.999 21 C -0.510 4.510 22 H 0.055 0.945 23 C 0.029 3.971 24 N -0.903 5.903 25 Si 0.946 3.054 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.271 1.271 29 C -0.149 4.149 30 C -0.179 4.179 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.411 0.589 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.261 0.739 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -11.681 -16.944 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 H 0.090 0.910 4 C -0.156 4.156 5 C -0.100 4.100 6 H 0.151 0.849 7 C -0.168 4.168 8 C -0.151 4.151 9 C -0.151 4.151 10 C -0.171 4.171 11 C 0.032 3.968 12 H 0.096 0.904 13 N -0.308 5.308 14 C 0.307 3.693 15 O -0.416 6.416 16 C 0.269 3.731 17 O -0.414 6.414 18 N -0.327 5.327 19 C 0.058 3.942 20 C 0.000 4.000 21 C -0.547 4.547 22 H 0.073 0.927 23 C -0.172 4.172 24 N -0.540 5.540 25 Si 0.772 3.228 26 H -0.200 1.200 27 H -0.213 1.213 28 H -0.196 1.196 29 C -0.187 4.187 30 C -0.217 4.217 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.247 0.753 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.103 0.897 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.162 -11.363 -17.107 23.868 hybrid contribution -1.183 -0.022 1.444 1.867 sum 10.979 -11.384 -15.663 22.259 Atomic orbital electron populations 1.22438 0.94900 1.02017 1.01619 1.21944 0.94659 0.96171 0.84463 0.90977 1.23099 1.03098 0.94441 0.95001 1.22473 0.98286 0.96105 0.93178 0.84916 1.21883 0.97024 0.97128 1.00787 1.21507 1.01807 0.97800 0.93963 1.21431 0.96447 0.99171 0.98076 1.21502 0.98206 0.96729 1.00676 1.21461 0.94249 0.86168 0.94920 0.90414 1.48309 1.48515 1.29956 1.04058 1.19659 0.82175 0.84604 0.82875 1.90663 1.52261 1.52316 1.46355 1.20370 0.82431 0.86622 0.83657 1.90724 1.55053 1.49736 1.45861 1.45859 1.52206 1.26667 1.07951 1.20803 0.92806 0.84535 0.96085 1.19066 0.94780 0.97351 0.88781 1.20678 0.91816 1.02718 1.39527 0.92696 1.25629 0.99965 0.96270 0.95338 1.70109 1.20224 1.21320 1.42329 0.85737 0.78714 0.79429 0.78889 1.19958 1.21275 1.19580 1.22450 1.01909 0.91876 1.02492 1.22966 0.93107 1.03918 1.01663 0.90619 0.94658 0.91983 0.88710 0.87865 0.92301 0.89668 0.92263 0.89928 0.92138 0.95713 0.88736 0.91412 0.75295 0.93507 0.94046 0.93014 0.90625 0.91556 0.89709 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 7.37 71.98 0.53 -3.44 16 2 C 0.13 2.96 2.71 45.33 0.12 3.09 16 3 H 0.07 1.84 7.69 -2.39 -0.02 1.82 16 4 C -0.12 -1.55 5.90 32.12 0.19 -1.36 16 5 C -0.08 -1.04 3.68 -9.43 -0.03 -1.07 16 6 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.13 -1.93 4.78 30.49 0.15 -1.79 16 8 C -0.11 -1.81 5.92 30.57 0.18 -1.62 16 9 C -0.11 -2.53 5.88 30.63 0.18 -2.35 16 10 C -0.13 -2.82 4.83 29.96 0.14 -2.68 16 11 C 0.13 2.62 2.85 44.73 0.13 2.75 16 12 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 13 N -0.57 -15.18 2.76 -772.10 -2.13 -17.31 16 14 C 0.52 17.81 6.89 87.27 0.60 18.41 16 15 O -0.54 -19.73 14.05 -3.25 -0.05 -19.77 16 16 C 0.49 18.87 6.96 87.27 0.61 19.47 16 17 O -0.54 -21.68 12.03 -3.25 -0.04 -21.71 16 18 N -0.68 -27.79 5.49 -464.44 -2.55 -30.34 16 19 C 0.18 8.36 5.57 86.38 0.48 8.84 16 20 C 0.00 0.05 1.34 -52.92 -0.07 -0.02 16 21 C -0.51 -27.10 8.82 25.60 0.23 -26.87 16 22 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 23 C 0.03 1.57 5.40 84.66 0.46 2.03 16 24 N -0.90 -50.87 12.90 21.45 0.28 -50.59 16 25 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 C -0.15 -6.79 9.36 30.60 0.29 -6.51 16 30 C -0.18 -7.38 9.91 30.60 0.30 -7.07 16 31 H 0.08 1.62 5.20 -2.39 -0.01 1.60 16 32 H 0.03 1.19 5.10 -2.39 -0.01 1.18 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.06 7.55 -2.39 -0.02 1.05 16 36 H 0.06 1.17 4.08 -2.39 -0.01 1.16 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.02 0.71 7.51 -2.38 -0.02 0.70 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.89 5.65 -2.39 -0.01 1.88 16 44 H 0.41 16.61 7.99 -92.70 -0.74 15.87 16 45 H 0.05 2.11 7.94 -2.39 -0.02 2.09 16 46 H 0.04 2.20 8.12 -2.39 -0.02 2.18 16 47 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 48 H 0.08 3.24 8.08 -2.39 -0.02 3.22 16 49 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 50 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 51 H 0.09 3.23 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -63.05 385.02 2.21 -60.84 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.19 Total: 33.93 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 4.48 Total: -0.21 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.40 Total: -98.23 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -0.08 Total: -41.49 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -63.05 2.21 -60.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324126613.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.011 kcal (2) G-P(sol) polarization free energy of solvation -63.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds