Wall clock time and date at job start Tue Mar 31 2020 19:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47554 * 2 1 4 4 C 1.52998 * 109.47240 * 239.99508 * 2 1 3 5 5 C 1.53001 * 117.49892 * 130.04596 * 4 2 1 6 6 C 1.52995 * 60.00109 * 252.51510 * 5 4 2 7 7 N 1.46504 * 109.47051 * 120.00244 * 2 1 3 8 8 C 1.34783 * 119.99846 * 242.19985 * 7 2 1 9 9 O 1.21345 * 119.99584 * 4.93867 * 8 7 2 10 10 C 1.49448 * 119.99987 * 184.94267 * 8 7 2 11 11 O 1.21356 * 119.99829 * 274.06630 * 10 8 7 12 12 N 1.34782 * 120.00156 * 94.06595 * 10 8 7 13 13 C 1.46918 * 120.62849 * 355.33233 * 12 10 8 14 14 C 1.53194 * 108.77605 * 126.36786 * 13 12 10 15 15 C 1.53041 * 109.31044 * 54.63437 * 14 13 12 16 16 C 1.53038 * 109.53955 * 298.63773 * 15 14 13 17 17 H 1.09005 * 109.49222 * 301.41114 * 16 15 14 18 18 C 1.50702 * 109.49954 * 181.32027 * 16 15 14 19 19 H 1.07998 * 119.99912 * 0.15015 * 18 16 15 20 20 C 1.37876 * 119.99698 * 180.16128 * 18 16 15 21 21 N 1.31514 * 120.00315 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99797 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47094 * 89.99546 * 22 20 18 24 24 H 1.48502 * 109.47086 * 209.99963 * 22 20 18 25 25 H 1.48500 * 109.46969 * 329.99975 * 22 20 18 26 26 C 1.46920 * 120.62749 * 175.30928 * 12 10 8 27 27 C 1.46498 * 120.00187 * 62.19439 * 7 2 1 28 28 C 1.52995 * 117.50019 * 1.86230 * 27 7 2 29 29 C 1.52997 * 60.00093 * 252.51048 * 28 27 7 30 30 H 1.08998 * 109.47114 * 301.80512 * 1 2 3 31 31 H 1.09001 * 109.46802 * 61.80403 * 1 2 3 32 32 H 1.08995 * 109.47120 * 181.80406 * 1 2 3 33 33 H 1.09003 * 115.55314 * 275.76001 * 4 2 1 34 34 H 1.08999 * 117.49526 * 0.02562 * 5 4 2 35 35 H 1.08997 * 117.49566 * 145.02247 * 5 4 2 36 36 H 1.08999 * 117.49840 * 252.50741 * 6 5 4 37 37 H 1.08997 * 117.51793 * 107.48334 * 6 5 4 38 38 H 1.09000 * 109.58873 * 246.15590 * 13 12 10 39 39 H 1.09003 * 109.58990 * 6.44000 * 13 12 10 40 40 H 1.09002 * 109.49985 * 174.58760 * 14 13 12 41 41 H 1.08998 * 109.49875 * 294.68662 * 14 13 12 42 42 H 1.09000 * 109.46138 * 58.65652 * 15 14 13 43 43 H 1.08998 * 109.46043 * 178.62582 * 15 14 13 44 44 H 0.97007 * 119.99902 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.59379 * 353.41876 * 26 12 10 46 46 H 1.09002 * 109.58551 * 113.84870 * 26 12 10 47 47 H 1.09000 * 115.54887 * 147.57623 * 27 7 2 48 48 H 1.08998 * 117.49761 * 0.02562 * 28 27 7 49 49 H 1.09003 * 117.49816 * 145.01878 * 28 27 7 50 50 H 1.09005 * 117.49951 * 252.50501 * 29 28 27 51 51 H 1.08998 * 117.49603 * 107.48925 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.0988 -0.0091 -2.0934 6 6 1.6636 -0.1304 -2.6093 7 7 2.0184 -0.6907 1.1962 8 6 2.7562 -0.0235 2.1056 9 8 2.9409 1.1693 1.9798 10 6 3.3471 -0.7526 3.2686 11 8 2.6920 -0.9193 4.2765 12 7 4.6074 -1.2250 3.1982 13 6 5.3770 -1.1213 1.9510 14 6 6.7120 -0.4325 2.2512 15 6 7.4302 -1.1874 3.3721 16 6 6.5745 -1.1559 4.6405 17 1 6.3926 -0.1211 4.9309 18 6 7.2970 -1.8716 5.7527 19 1 8.2705 -2.3036 5.5740 20 6 6.7149 -1.9749 6.9983 21 7 5.5295 -1.4486 7.2160 22 14 7.6101 -2.8626 8.3768 23 1 8.4520 -1.8943 9.1243 24 1 6.6186 -3.4719 9.2992 25 1 8.4715 -3.9272 7.8025 26 6 5.2379 -1.8528 4.3674 27 6 1.7046 -2.1065 1.4040 28 6 0.9002 -2.8190 0.3149 29 6 0.2410 -2.4766 1.6524 30 1 -0.3633 0.5416 0.8733 31 1 -0.3633 0.4856 -0.9057 32 1 -0.3633 -1.0271 0.0324 33 1 2.1037 -1.8068 -1.1722 34 1 3.4322 0.9731 -1.7586 35 1 3.8594 -0.6260 -2.5719 36 1 1.4799 -0.8270 -3.4273 37 1 1.0522 0.7720 -2.6142 38 1 5.5621 -2.1186 1.5519 39 1 4.8163 -0.5347 1.2233 40 1 7.3325 -0.4353 1.3550 41 1 6.5288 0.5953 2.5642 42 1 7.5911 -2.2218 3.0683 43 1 8.3916 -0.7137 3.5710 44 1 5.1202 -1.5210 8.0925 45 1 4.5865 -1.7468 5.2349 46 1 5.4116 -2.9098 4.1653 47 1 2.4658 -2.6848 1.9277 48 1 0.6049 -2.2345 -0.5564 49 1 1.1323 -3.8664 0.1217 50 1 0.0392 -3.2987 2.3392 51 1 -0.4884 -1.6667 1.6612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328164996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:58 Heat of formation + Delta-G solvation = 0.018424 kcal Electronic energy + Delta-G solvation = -31023.700009 eV Core-core repulsion = 27118.506079 eV Total energy + Delta-G solvation = -3905.193930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98124 -39.31734 -37.84753 -36.94728 -36.67867 -33.44808 -33.39404 -31.85817 -30.96063 -29.84631 -26.18553 -25.09490 -24.64912 -23.06164 -22.96769 -22.37204 -21.96183 -21.83776 -20.21555 -19.59486 -18.55693 -17.68238 -16.69482 -16.29366 -16.14547 -15.65104 -15.06990 -14.96571 -14.59001 -14.46465 -14.17671 -13.88996 -13.75837 -13.69644 -13.31981 -13.25202 -12.87589 -12.65553 -12.57807 -12.17074 -12.06313 -11.96376 -11.79189 -11.50376 -11.30483 -11.13196 -11.03244 -10.95441 -10.80070 -10.66615 -10.51909 -10.49227 -10.41158 -10.26344 -10.19104 -9.95869 -9.24490 -9.17012 -8.85637 -8.68185 -8.46232 -7.91265 -6.02077 -4.11110 2.31662 2.42798 3.00032 3.30200 3.37506 3.39441 3.48917 3.58740 3.73355 4.25785 4.40865 4.46242 4.56764 4.62987 4.70778 4.73693 4.85995 4.99036 5.10307 5.13846 5.25466 5.28737 5.35518 5.38470 5.45279 5.46550 5.61048 5.61292 5.63477 5.66682 5.80687 5.87296 5.89898 5.91083 5.93915 6.04224 6.15302 6.28055 6.36227 6.54849 6.62009 6.79856 6.93120 7.02633 7.11630 7.14162 7.56606 7.81631 7.91005 7.94000 8.06840 8.32317 8.52639 8.93043 9.54796 11.03399 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.003395 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.598576 B = 8244.862972 C = 8933.473939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.165 3.835 3 H 0.103 0.897 4 C -0.176 4.176 5 C -0.175 4.175 6 C -0.171 4.171 7 N -0.567 5.567 8 C 0.525 3.475 9 O -0.515 6.515 10 C 0.508 3.492 11 O -0.509 6.509 12 N -0.586 5.586 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.038 3.962 17 H 0.031 0.969 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.112 3.888 27 C 0.070 3.930 28 C -0.194 4.194 29 C -0.189 4.189 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.264 0.736 45 H 0.124 0.876 46 H 0.049 0.951 47 H 0.130 0.870 48 H 0.119 0.881 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.150 -2.015 -20.413 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.062 3.938 3 H 0.121 0.879 4 C -0.194 4.194 5 C -0.212 4.212 6 C -0.209 4.209 7 N -0.301 5.301 8 C 0.309 3.691 9 O -0.389 6.389 10 C 0.289 3.711 11 O -0.384 6.384 12 N -0.320 5.320 13 C -0.014 4.014 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.019 3.981 17 H 0.049 0.951 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.007 4.007 27 C -0.035 4.035 28 C -0.231 4.231 29 C -0.228 4.228 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.067 0.933 47 H 0.147 0.853 48 H 0.137 0.863 49 H 0.122 0.878 50 H 0.122 0.878 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.516 -1.413 -19.747 21.966 hybrid contribution 0.474 -0.438 0.768 1.003 sum -9.042 -1.851 -18.979 21.104 Atomic orbital electron populations 1.22584 0.94611 1.03746 1.02612 1.20644 0.94170 0.97037 0.81948 0.87906 1.22974 1.04706 1.00518 0.91247 1.23041 0.92216 1.02405 1.03565 1.22923 0.98707 1.03083 0.96174 1.47446 1.52131 1.09695 1.20829 1.20739 0.78344 0.87750 0.82284 1.90753 1.59991 1.14159 1.73974 1.19926 0.83292 0.79971 0.87942 1.90819 1.60376 1.56167 1.31024 1.48584 1.12032 1.56945 1.14444 1.21684 0.93483 1.00492 0.85763 1.21940 0.95347 1.00364 0.99528 1.21628 0.98874 0.98597 0.95656 1.18997 0.90471 0.97233 0.91377 0.95107 1.21061 1.03667 1.36636 0.94549 0.92235 1.25064 0.94950 0.95353 0.98672 1.69878 1.14865 1.44042 1.23025 0.86574 0.79434 0.79868 0.82013 1.20667 1.21169 1.19890 1.22456 0.97828 0.94384 0.86082 1.21684 0.95585 0.82088 1.04116 1.23796 1.03625 1.01644 0.94059 1.23625 0.96142 1.04091 0.98928 0.91956 0.91308 0.90383 0.86019 0.88590 0.88642 0.88598 0.88666 0.91396 0.91555 0.91999 0.91821 0.93068 0.92782 0.92562 0.85789 0.93274 0.85273 0.86301 0.87757 0.87826 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 7.94 37.16 0.30 -1.33 16 2 C 0.16 1.82 2.76 -67.93 -0.19 1.64 16 3 H 0.10 1.33 6.69 -51.93 -0.35 0.98 16 4 C -0.18 -1.52 4.08 -90.62 -0.37 -1.89 16 5 C -0.18 -1.48 10.18 -26.73 -0.27 -1.75 16 6 C -0.17 -1.19 9.73 -26.73 -0.26 -1.45 16 7 N -0.57 -7.76 2.72 -159.09 -0.43 -8.20 16 8 C 0.52 9.58 5.45 -11.58 -0.06 9.52 16 9 O -0.51 -10.59 16.44 5.50 0.09 -10.50 16 10 C 0.51 10.74 5.83 -11.58 -0.07 10.67 16 11 O -0.51 -12.63 16.53 5.49 0.09 -12.54 16 12 N -0.59 -11.88 2.97 -173.28 -0.51 -12.39 16 13 C 0.11 1.78 6.36 -3.71 -0.02 1.76 16 14 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 15 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 16 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.52 11.39 55.43 0.63 -24.89 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 C 0.11 2.65 5.39 -3.71 -0.02 2.63 16 27 C 0.07 0.84 5.67 -67.93 -0.39 0.45 16 28 C -0.19 -1.60 7.75 -26.74 -0.21 -1.81 16 29 C -0.19 -1.94 9.62 -26.73 -0.26 -2.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.50 7.32 -51.93 -0.38 0.12 16 32 H 0.08 0.64 3.58 -51.93 -0.19 0.45 16 33 H 0.12 1.01 5.26 -51.93 -0.27 0.74 16 34 H 0.10 0.89 8.06 -51.93 -0.42 0.48 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.63 7.69 -51.93 -0.40 0.23 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.01 6.31 -51.93 -0.33 0.69 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.12 3.45 5.15 -51.93 -0.27 3.18 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.13 1.71 7.29 -51.93 -0.38 1.33 16 48 H 0.12 0.88 3.82 -51.93 -0.20 0.68 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 51 H 0.10 1.07 6.13 -51.93 -0.32 0.76 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -31.89 390.02 -10.10 -41.98 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.11 Total: 4.94 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.71 Total: -0.32 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.32 Total: -45.48 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.18 Total: -23.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.89 -10.10 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328164996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.003 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds