Wall clock time and date at job start Tue Mar 31 2020 19:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47554 * 2 1 4 4 C 1.52998 * 109.47240 * 239.99508 * 2 1 3 5 5 C 1.53001 * 117.49892 * 130.04596 * 4 2 1 6 6 C 1.52995 * 60.00109 * 252.51510 * 5 4 2 7 7 N 1.46504 * 109.47051 * 120.00244 * 2 1 3 8 8 C 1.34783 * 119.99846 * 242.19985 * 7 2 1 9 9 O 1.21345 * 119.99584 * 4.93867 * 8 7 2 10 10 C 1.49448 * 119.99987 * 184.94267 * 8 7 2 11 11 O 1.21356 * 119.99829 * 274.06630 * 10 8 7 12 12 N 1.34782 * 120.00156 * 94.06595 * 10 8 7 13 13 C 1.46918 * 120.62849 * 355.33233 * 12 10 8 14 14 C 1.53194 * 108.77605 * 126.36786 * 13 12 10 15 15 C 1.53041 * 109.31044 * 54.63437 * 14 13 12 16 16 C 1.53038 * 109.53955 * 298.63773 * 15 14 13 17 17 H 1.09005 * 109.49222 * 301.41114 * 16 15 14 18 18 C 1.50702 * 109.49954 * 181.32027 * 16 15 14 19 19 H 1.07998 * 119.99912 * 0.15015 * 18 16 15 20 20 C 1.37876 * 119.99698 * 180.16128 * 18 16 15 21 21 N 1.31514 * 120.00315 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99797 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47094 * 89.99546 * 22 20 18 24 24 H 1.48502 * 109.47086 * 209.99963 * 22 20 18 25 25 H 1.48500 * 109.46969 * 329.99975 * 22 20 18 26 26 C 1.46920 * 120.62749 * 175.30928 * 12 10 8 27 27 C 1.46498 * 120.00187 * 62.19439 * 7 2 1 28 28 C 1.52995 * 117.50019 * 1.86230 * 27 7 2 29 29 C 1.52997 * 60.00093 * 252.51048 * 28 27 7 30 30 H 1.08998 * 109.47114 * 301.80512 * 1 2 3 31 31 H 1.09001 * 109.46802 * 61.80403 * 1 2 3 32 32 H 1.08995 * 109.47120 * 181.80406 * 1 2 3 33 33 H 1.09003 * 115.55314 * 275.76001 * 4 2 1 34 34 H 1.08999 * 117.49526 * 0.02562 * 5 4 2 35 35 H 1.08997 * 117.49566 * 145.02247 * 5 4 2 36 36 H 1.08999 * 117.49840 * 252.50741 * 6 5 4 37 37 H 1.08997 * 117.51793 * 107.48334 * 6 5 4 38 38 H 1.09000 * 109.58873 * 246.15590 * 13 12 10 39 39 H 1.09003 * 109.58990 * 6.44000 * 13 12 10 40 40 H 1.09002 * 109.49985 * 174.58760 * 14 13 12 41 41 H 1.08998 * 109.49875 * 294.68662 * 14 13 12 42 42 H 1.09000 * 109.46138 * 58.65652 * 15 14 13 43 43 H 1.08998 * 109.46043 * 178.62582 * 15 14 13 44 44 H 0.97007 * 119.99902 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.59379 * 353.41876 * 26 12 10 46 46 H 1.09002 * 109.58551 * 113.84870 * 26 12 10 47 47 H 1.09000 * 115.54887 * 147.57623 * 27 7 2 48 48 H 1.08998 * 117.49761 * 0.02562 * 28 27 7 49 49 H 1.09003 * 117.49816 * 145.01878 * 28 27 7 50 50 H 1.09005 * 117.49951 * 252.50501 * 29 28 27 51 51 H 1.08998 * 117.49603 * 107.48925 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.0988 -0.0091 -2.0934 6 6 1.6636 -0.1304 -2.6093 7 7 2.0184 -0.6907 1.1962 8 6 2.7562 -0.0235 2.1056 9 8 2.9409 1.1693 1.9798 10 6 3.3471 -0.7526 3.2686 11 8 2.6920 -0.9193 4.2765 12 7 4.6074 -1.2250 3.1982 13 6 5.3770 -1.1213 1.9510 14 6 6.7120 -0.4325 2.2512 15 6 7.4302 -1.1874 3.3721 16 6 6.5745 -1.1559 4.6405 17 1 6.3926 -0.1211 4.9309 18 6 7.2970 -1.8716 5.7527 19 1 8.2705 -2.3036 5.5740 20 6 6.7149 -1.9749 6.9983 21 7 5.5295 -1.4486 7.2160 22 14 7.6101 -2.8626 8.3768 23 1 8.4520 -1.8943 9.1243 24 1 6.6186 -3.4719 9.2992 25 1 8.4715 -3.9272 7.8025 26 6 5.2379 -1.8528 4.3674 27 6 1.7046 -2.1065 1.4040 28 6 0.9002 -2.8190 0.3149 29 6 0.2410 -2.4766 1.6524 30 1 -0.3633 0.5416 0.8733 31 1 -0.3633 0.4856 -0.9057 32 1 -0.3633 -1.0271 0.0324 33 1 2.1037 -1.8068 -1.1722 34 1 3.4322 0.9731 -1.7586 35 1 3.8594 -0.6260 -2.5719 36 1 1.4799 -0.8270 -3.4273 37 1 1.0522 0.7720 -2.6142 38 1 5.5621 -2.1186 1.5519 39 1 4.8163 -0.5347 1.2233 40 1 7.3325 -0.4353 1.3550 41 1 6.5288 0.5953 2.5642 42 1 7.5911 -2.2218 3.0683 43 1 8.3916 -0.7137 3.5710 44 1 5.1202 -1.5210 8.0925 45 1 4.5865 -1.7468 5.2349 46 1 5.4116 -2.9098 4.1653 47 1 2.4658 -2.6848 1.9277 48 1 0.6049 -2.2345 -0.5564 49 1 1.1323 -3.8664 0.1217 50 1 0.0392 -3.2987 2.3392 51 1 -0.4884 -1.6667 1.6612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328164996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:57 Heat of formation + Delta-G solvation = -18.750346 kcal Electronic energy + Delta-G solvation = -31024.513884 eV Core-core repulsion = 27118.506079 eV Total energy + Delta-G solvation = -3906.007805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.27859 -40.65893 -39.20695 -38.44332 -37.64178 -35.35826 -34.45064 -33.58871 -31.97490 -31.57893 -27.79691 -26.90207 -25.69501 -24.34914 -23.82886 -23.55339 -23.06770 -22.85615 -21.38323 -20.81040 -19.95171 -19.23231 -18.29012 -17.99084 -17.60103 -16.71878 -16.58189 -16.11405 -16.01607 -15.64139 -15.47198 -15.33018 -15.19760 -14.87031 -14.58739 -14.48359 -14.31413 -14.08854 -13.89666 -13.64554 -13.49205 -12.90038 -12.79961 -12.75820 -12.65144 -12.40321 -12.33751 -12.30553 -12.25774 -12.09455 -11.90427 -11.71964 -11.57640 -11.54787 -11.17746 -11.13174 -10.99350 -10.86816 -10.58418 -10.50566 -9.74554 -9.64575 -8.12177 -6.29653 0.88228 1.06536 1.38010 1.42501 1.44091 1.53655 2.22053 2.42273 2.75778 2.92706 3.04845 3.17041 3.59830 3.66396 3.86551 3.87710 3.89777 4.04482 4.07075 4.15574 4.17986 4.23130 4.34190 4.40243 4.48364 4.63163 4.66038 4.68574 4.70973 4.75361 4.75929 4.85595 4.86825 5.00682 5.01727 5.08013 5.14538 5.15312 5.18047 5.19656 5.27064 5.28893 5.32503 5.40106 5.41311 5.56787 5.84033 5.92225 5.94264 6.26099 6.30696 6.59297 6.79172 6.87452 7.41058 8.91788 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.003395 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.598576 B = 8244.862972 C = 8933.473939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.181 4.181 5 C -0.187 4.187 6 C -0.148 4.148 7 N -0.547 5.547 8 C 0.528 3.472 9 O -0.550 6.550 10 C 0.501 3.499 11 O -0.560 6.560 12 N -0.585 5.585 13 C 0.107 3.893 14 C -0.127 4.127 15 C -0.102 4.102 16 C 0.035 3.965 17 H -0.019 1.019 18 C -0.532 4.532 19 H 0.067 0.933 20 C 0.009 3.991 21 N -0.918 5.918 22 Si 0.961 3.039 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.258 1.258 26 C 0.125 3.875 27 C 0.031 3.969 28 C -0.150 4.150 29 C -0.195 4.195 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.113 0.887 48 H 0.136 0.864 49 H 0.129 0.871 50 H 0.105 0.895 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.006 -4.045 -24.180 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.098 0.902 4 C -0.199 4.199 5 C -0.224 4.224 6 C -0.186 4.186 7 N -0.278 5.278 8 C 0.311 3.689 9 O -0.427 6.427 10 C 0.283 3.717 11 O -0.439 6.439 12 N -0.317 5.317 13 C -0.015 4.015 14 C -0.165 4.165 15 C -0.140 4.140 16 C 0.016 3.984 17 H -0.001 1.001 18 C -0.571 4.571 19 H 0.085 0.915 20 C -0.190 4.190 21 N -0.557 5.557 22 Si 0.786 3.214 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.182 1.182 26 C 0.004 3.996 27 C -0.073 4.073 28 C -0.187 4.187 29 C -0.234 4.234 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.131 0.869 48 H 0.154 0.846 49 H 0.147 0.853 50 H 0.123 0.877 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.365 -3.475 -23.593 25.620 hybrid contribution 0.406 0.209 1.909 1.963 sum -8.959 -3.265 -21.684 23.688 Atomic orbital electron populations 1.22570 0.92836 1.04658 1.02974 1.20901 0.95510 0.96064 0.81789 0.90199 1.22865 1.05734 1.00674 0.90644 1.23086 0.93447 1.01826 1.04065 1.23040 0.97154 1.03267 0.95105 1.47451 1.49840 1.10419 1.20136 1.20110 0.79397 0.87101 0.82261 1.90734 1.62045 1.15125 1.74833 1.20564 0.83296 0.79394 0.88408 1.90773 1.61704 1.58196 1.33185 1.48581 1.12112 1.56123 1.14902 1.21991 0.92783 1.02636 0.84048 1.21910 0.95906 0.98473 1.00210 1.21507 0.98120 1.00196 0.94136 1.18953 0.91807 0.94031 0.93648 1.00094 1.21483 1.03973 1.36228 0.95394 0.91457 1.25927 0.95529 0.96170 1.01397 1.70089 1.16633 1.45731 1.23204 0.85515 0.78201 0.78915 0.78794 1.20432 1.21367 1.18207 1.21927 0.96645 0.94849 0.86149 1.21865 0.96430 0.81077 1.07949 1.23923 0.99201 1.02539 0.92992 1.23691 0.94543 1.04188 1.00936 0.93984 0.88783 0.88967 0.84920 0.90208 0.87549 0.86342 0.88234 0.88031 0.90267 0.87354 0.94130 0.91290 0.92609 0.93088 0.90298 0.92503 0.86926 0.84648 0.85299 0.87653 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 7.94 71.98 0.57 -2.25 16 2 C 0.16 3.32 2.76 44.99 0.12 3.44 16 3 H 0.08 2.08 6.69 -2.39 -0.02 2.06 16 4 C -0.18 -2.56 4.08 -10.79 -0.04 -2.61 16 5 C -0.19 -2.66 10.18 30.59 0.31 -2.35 16 6 C -0.15 -1.47 9.73 30.59 0.30 -1.17 16 7 N -0.55 -14.87 2.72 -775.61 -2.11 -16.98 16 8 C 0.53 20.06 5.45 87.27 0.48 20.53 16 9 O -0.55 -23.74 16.44 -3.23 -0.05 -23.79 16 10 C 0.50 22.43 5.83 87.27 0.51 22.94 16 11 O -0.56 -30.02 16.53 -3.27 -0.05 -30.08 16 12 N -0.58 -24.51 2.97 -820.49 -2.44 -26.95 16 13 C 0.11 3.36 6.36 86.36 0.55 3.90 16 14 C -0.13 -4.08 6.08 30.67 0.19 -3.90 16 15 C -0.10 -3.94 5.11 30.62 0.16 -3.78 16 16 C 0.03 1.77 2.25 -11.46 -0.03 1.75 16 17 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 18 C -0.53 -29.06 8.56 25.60 0.22 -28.84 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 20 C 0.01 0.51 5.30 84.65 0.45 0.96 16 21 N -0.92 -56.13 11.39 21.45 0.24 -55.89 16 22 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 C 0.13 6.23 5.39 86.36 0.47 6.69 16 27 C 0.03 0.71 5.67 44.99 0.26 0.96 16 28 C -0.15 -1.95 7.75 30.59 0.24 -1.71 16 29 C -0.20 -3.72 9.62 30.59 0.29 -3.43 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.08 7.32 -2.39 -0.02 1.06 16 32 H 0.09 1.23 3.58 -2.39 -0.01 1.22 16 33 H 0.13 1.62 5.26 -2.39 -0.01 1.60 16 34 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 0.93 7.69 -2.39 -0.02 0.92 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.08 2.32 6.31 -2.39 -0.02 2.31 16 40 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 45 H 0.08 4.71 5.15 -2.39 -0.01 4.70 16 46 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.11 2.98 7.29 -2.39 -0.02 2.97 16 48 H 0.14 1.36 3.82 -2.39 -0.01 1.35 16 49 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.10 2.01 6.13 -2.39 -0.01 1.99 16 Total: -1.00 -76.77 390.02 3.58 -73.19 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.93 Total: 23.30 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.03 Total: 11.15 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.30 Total: -99.82 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.11 Total: -53.87 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -76.77 3.58 -73.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328164996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.442 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds