Wall clock time and date at job start Tue Mar 31 2020 19:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47081 * 240.00166 * 2 1 3 5 5 C 1.53012 * 117.49809 * 129.19403 * 4 2 1 6 6 C 1.53005 * 117.49808 * 60.53689 * 4 2 1 7 7 N 1.46496 * 109.47216 * 120.00201 * 2 1 3 8 8 C 1.34774 * 119.99905 * 242.22560 * 7 2 1 9 9 O 1.21348 * 120.00067 * 4.89744 * 8 7 2 10 10 C 1.49451 * 120.00347 * 184.89565 * 8 7 2 11 11 O 1.21354 * 119.99700 * 274.07577 * 10 8 7 12 12 N 1.34776 * 120.00222 * 94.06804 * 10 8 7 13 13 C 1.46932 * 120.62613 * 4.68726 * 12 10 8 14 14 C 1.52761 * 109.00846 * 233.58219 * 13 12 10 15 15 C 1.53048 * 109.38272 * 305.59362 * 14 13 12 16 16 C 1.53041 * 109.53983 * 61.23852 * 15 14 13 17 17 H 1.08994 * 109.49773 * 58.58806 * 16 15 14 18 18 C 1.50694 * 109.52365 * 178.67074 * 16 15 14 19 19 H 1.08005 * 119.99906 * 359.84830 * 18 16 15 20 20 C 1.37874 * 120.00160 * 179.85503 * 18 16 15 21 21 N 1.31517 * 119.99876 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00171 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46837 * 89.99954 * 22 20 18 24 24 H 1.48492 * 109.47119 * 209.99993 * 22 20 18 25 25 H 1.48500 * 109.47152 * 330.00041 * 22 20 18 26 26 C 1.46926 * 120.63354 * 184.97017 * 12 10 8 27 27 C 1.46493 * 120.00200 * 62.22628 * 7 2 1 28 28 C 1.53003 * 117.49784 * 293.79616 * 27 7 2 29 29 C 1.53003 * 60.00161 * 107.48752 * 28 27 7 30 30 H 1.09000 * 109.47244 * 293.03827 * 1 2 3 31 31 H 1.08998 * 109.47284 * 53.04493 * 1 2 3 32 32 H 1.09002 * 109.47009 * 173.03952 * 1 2 3 33 33 H 1.08995 * 115.55611 * 274.86535 * 4 2 1 34 34 H 1.08996 * 117.49812 * 0.02562 * 5 4 2 35 35 H 1.08995 * 117.49336 * 145.02228 * 5 4 2 36 36 H 1.09001 * 117.49665 * 214.97885 * 6 4 2 37 37 H 1.08995 * 117.50259 * 359.97438 * 6 4 2 38 38 H 1.08991 * 109.58875 * 353.41919 * 13 12 10 39 39 H 1.09000 * 109.58083 * 113.84359 * 13 12 10 40 40 H 1.08992 * 109.56744 * 185.55642 * 14 13 12 41 41 H 1.08998 * 109.36050 * 65.49674 * 14 13 12 42 42 H 1.09004 * 109.45498 * 301.21951 * 15 14 13 43 43 H 1.08997 * 109.44494 * 181.25744 * 15 14 13 44 44 H 0.96997 * 119.99797 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58460 * 246.15592 * 26 12 10 46 46 H 1.09000 * 109.58574 * 6.57396 * 26 12 10 47 47 H 1.09002 * 115.56448 * 148.10384 * 27 7 2 48 48 H 1.08998 * 117.49779 * 359.97438 * 28 27 7 49 49 H 1.09004 * 117.49356 * 214.97734 * 28 27 7 50 50 H 1.09002 * 117.49278 * 107.48482 * 29 28 27 51 51 H 1.08993 * 117.49492 * 252.51044 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.0841 -0.0003 -2.1044 6 6 1.6461 -0.1421 -2.6096 7 7 2.0183 -0.6906 1.1961 8 6 2.7558 -0.0233 2.1057 9 8 2.9406 1.1694 1.9798 10 6 3.3458 -0.7521 3.2694 11 8 2.6901 -0.9186 4.2768 12 7 4.6061 -1.2247 3.1999 13 6 5.4475 -0.9433 2.0287 14 6 5.9827 -2.2615 1.4723 15 6 6.6938 -3.0320 2.5872 16 6 5.6991 -3.3467 3.7069 17 1 4.8717 -3.9313 3.3048 18 6 6.3917 -4.1335 4.7894 19 1 7.4368 -4.3868 4.6884 20 6 5.6913 -4.5304 5.9088 21 7 4.4188 -4.2217 6.0319 22 14 6.5497 -5.5064 7.2504 23 1 7.1288 -4.5720 8.2488 24 1 5.5685 -6.3986 7.9183 25 1 7.6344 -6.3244 6.6506 26 6 5.1626 -2.0361 4.2910 27 6 1.7052 -2.1066 1.4036 28 6 0.2399 -2.4789 1.6386 29 6 0.9125 -2.8226 0.3081 30 1 -0.3634 0.4022 0.9457 31 1 -0.3634 0.6178 -0.8212 32 1 -0.3633 -1.0201 -0.1245 33 1 2.1181 -1.8053 -1.1674 34 1 3.4080 0.9875 -1.7767 35 1 3.8488 -0.6103 -2.5853 36 1 1.4654 -0.8452 -3.4226 37 1 1.0233 0.7524 -2.6146 38 1 4.8545 -0.4400 1.2652 39 1 6.2829 -0.3081 2.3231 40 1 6.6860 -2.0582 0.6648 41 1 5.1526 -2.8564 1.0913 42 1 7.5083 -2.4263 2.9846 43 1 7.0955 -3.9625 2.1861 44 1 3.9260 -4.5012 6.8192 45 1 5.9744 -1.4918 4.7737 46 1 4.3817 -2.2534 5.0198 47 1 2.4624 -2.6828 1.9352 48 1 -0.4910 -1.6703 1.6393 49 1 0.0332 -3.3001 2.3250 50 1 1.1484 -3.8700 0.1192 51 1 0.6241 -2.2402 -0.5668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328164997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:02 Heat of formation + Delta-G solvation = -1.939611 kcal Electronic energy + Delta-G solvation = -31367.781601 eV Core-core repulsion = 27462.502765 eV Total energy + Delta-G solvation = -3905.278836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93767 -39.28710 -37.84618 -36.85067 -36.69050 -33.44184 -33.35824 -31.88152 -30.92218 -29.89182 -26.17547 -25.11752 -24.61708 -23.01063 -22.89564 -22.31977 -21.91342 -21.83553 -20.16270 -19.45432 -18.73636 -17.49136 -16.74353 -16.28760 -16.14611 -15.57871 -15.03543 -14.87185 -14.63087 -14.39719 -14.13559 -13.85347 -13.79914 -13.59792 -13.40514 -13.21613 -12.82874 -12.68696 -12.57671 -12.17665 -12.05218 -11.96529 -11.74732 -11.37288 -11.25402 -11.11399 -11.06580 -10.94580 -10.71699 -10.60565 -10.55626 -10.42502 -10.40487 -10.30502 -10.13063 -9.98814 -9.26419 -9.20473 -8.86431 -8.61264 -8.50319 -7.92074 -6.06559 -4.14889 2.32249 2.43289 3.08402 3.27988 3.35826 3.37502 3.51864 3.68401 3.78388 4.29985 4.38513 4.51642 4.66136 4.67562 4.79420 4.85869 4.98164 5.04016 5.14294 5.18988 5.23545 5.26446 5.40067 5.43183 5.46631 5.54167 5.62364 5.68409 5.70906 5.77965 5.89302 5.91234 5.94847 5.97088 6.06363 6.09719 6.11055 6.24363 6.41061 6.51797 6.57532 6.77147 6.88401 7.01193 7.11152 7.19742 7.52366 7.76270 7.87879 7.94966 8.04668 8.28943 8.52035 8.88882 9.51328 10.99030 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.003699 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.754388 B = 7567.347640 C = 7941.250522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.165 3.835 3 H 0.102 0.898 4 C -0.176 4.176 5 C -0.175 4.175 6 C -0.171 4.171 7 N -0.563 5.563 8 C 0.526 3.474 9 O -0.524 6.524 10 C 0.508 3.492 11 O -0.509 6.509 12 N -0.587 5.587 13 C 0.108 3.892 14 C -0.131 4.131 15 C -0.112 4.112 16 C 0.042 3.958 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.111 3.889 27 C 0.069 3.931 28 C -0.188 4.188 29 C -0.195 4.195 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.125 0.875 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 5.154 -17.315 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.062 3.938 3 H 0.120 0.880 4 C -0.194 4.194 5 C -0.212 4.212 6 C -0.209 4.209 7 N -0.296 5.296 8 C 0.310 3.690 9 O -0.399 6.399 10 C 0.289 3.711 11 O -0.384 6.384 12 N -0.321 5.321 13 C -0.015 4.015 14 C -0.169 4.169 15 C -0.149 4.149 16 C 0.023 3.977 17 H 0.047 0.953 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.009 4.009 27 C -0.035 4.035 28 C -0.226 4.226 29 C -0.232 4.232 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.142 0.858 47 H 0.152 0.848 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.123 0.877 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.627 5.709 -16.668 18.824 hybrid contribution 0.459 -0.520 0.763 1.031 sum -6.167 5.189 -15.905 17.831 Atomic orbital electron populations 1.22531 0.94575 1.03484 1.02552 1.20648 0.94167 0.96941 0.82026 0.87973 1.22987 1.04649 1.00690 0.91091 1.23044 0.92346 1.02216 1.03622 1.22930 0.98501 1.03126 0.96318 1.47406 1.51730 1.09857 1.20606 1.20697 0.78353 0.87612 0.82377 1.90734 1.60490 1.14229 1.74427 1.19930 0.83208 0.80009 0.87980 1.90818 1.60665 1.55989 1.30922 1.48561 1.11617 1.50499 1.21396 1.21607 0.94812 0.97654 0.87426 1.21858 1.00231 0.96101 0.98712 1.21648 0.98901 0.98538 0.95844 1.18965 0.94036 0.91984 0.92679 0.95252 1.21062 0.96827 1.34464 1.03584 0.92237 1.25041 0.94819 0.95764 0.98290 1.69857 1.07650 1.45504 1.28856 0.86577 0.79333 0.80022 0.81994 1.20601 1.21189 1.19914 1.22484 0.99773 0.90287 0.88340 1.21767 0.95946 0.81738 1.04076 1.23592 0.95855 1.04071 0.99103 1.23804 1.03718 1.01729 0.93937 0.91889 0.91445 0.90598 0.85878 0.88685 0.88633 0.88596 0.88712 0.91508 0.91373 0.91940 0.92118 0.92999 0.92784 0.92563 0.93392 0.85764 0.84795 0.87945 0.87705 0.87693 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 7.62 37.16 0.28 -1.39 16 2 C 0.16 1.90 2.76 -67.93 -0.19 1.72 16 3 H 0.10 1.33 6.68 -51.92 -0.35 0.99 16 4 C -0.18 -1.64 4.06 -90.61 -0.37 -2.01 16 5 C -0.18 -1.55 10.18 -26.68 -0.27 -1.82 16 6 C -0.17 -1.27 9.82 -26.69 -0.26 -1.53 16 7 N -0.56 -8.13 2.72 -159.09 -0.43 -8.57 16 8 C 0.53 9.62 5.45 -11.59 -0.06 9.56 16 9 O -0.52 -10.43 16.44 5.50 0.09 -10.34 16 10 C 0.51 10.75 5.83 -11.59 -0.07 10.69 16 11 O -0.51 -12.64 16.53 5.49 0.09 -12.55 16 12 N -0.59 -11.89 2.98 -173.54 -0.52 -12.41 16 13 C 0.11 1.79 6.33 -3.93 -0.02 1.76 16 14 C -0.13 -2.03 6.07 -26.83 -0.16 -2.19 16 15 C -0.11 -2.11 5.11 -26.68 -0.14 -2.24 16 16 C 0.04 0.99 2.25 -91.66 -0.21 0.79 16 17 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.52 -13.55 8.56 -34.44 -0.30 -13.84 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -24.69 11.39 55.43 0.63 -24.06 16 22 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.11 2.61 5.39 -3.71 -0.02 2.59 16 27 C 0.07 0.95 5.69 -67.93 -0.39 0.57 16 28 C -0.19 -2.25 9.64 -26.73 -0.26 -2.51 16 29 C -0.19 -1.95 7.77 -26.73 -0.21 -2.16 16 30 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 31 H 0.07 0.53 7.58 -51.93 -0.39 0.13 16 32 H 0.08 0.67 4.10 -51.93 -0.21 0.45 16 33 H 0.12 1.16 5.25 -51.93 -0.27 0.89 16 34 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.65 7.72 -51.93 -0.40 0.25 16 38 H 0.07 1.03 6.31 -51.93 -0.33 0.70 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.12 3.41 5.15 -51.93 -0.27 3.14 16 47 H 0.13 2.19 7.27 -51.93 -0.38 1.81 16 48 H 0.10 1.17 6.05 -51.93 -0.31 0.86 16 49 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.12 1.02 3.67 -51.93 -0.19 0.83 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -30.43 390.12 -10.13 -40.57 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.13 Total: 6.22 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.73 Total: -0.43 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.32 Total: -45.04 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.43 -10.13 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328164997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.628 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds