Wall clock time and date at job start Tue Mar 31 2020 19:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47081 * 240.00166 * 2 1 3 5 5 C 1.53012 * 117.49809 * 129.19403 * 4 2 1 6 6 C 1.53005 * 117.49808 * 60.53689 * 4 2 1 7 7 N 1.46496 * 109.47216 * 120.00201 * 2 1 3 8 8 C 1.34774 * 119.99905 * 242.22560 * 7 2 1 9 9 O 1.21348 * 120.00067 * 4.89744 * 8 7 2 10 10 C 1.49451 * 120.00347 * 184.89565 * 8 7 2 11 11 O 1.21354 * 119.99700 * 274.07577 * 10 8 7 12 12 N 1.34776 * 120.00222 * 94.06804 * 10 8 7 13 13 C 1.46932 * 120.62613 * 4.68726 * 12 10 8 14 14 C 1.52761 * 109.00846 * 233.58219 * 13 12 10 15 15 C 1.53048 * 109.38272 * 305.59362 * 14 13 12 16 16 C 1.53041 * 109.53983 * 61.23852 * 15 14 13 17 17 H 1.08994 * 109.49773 * 58.58806 * 16 15 14 18 18 C 1.50694 * 109.52365 * 178.67074 * 16 15 14 19 19 H 1.08005 * 119.99906 * 359.84830 * 18 16 15 20 20 C 1.37874 * 120.00160 * 179.85503 * 18 16 15 21 21 N 1.31517 * 119.99876 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00171 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46837 * 89.99954 * 22 20 18 24 24 H 1.48492 * 109.47119 * 209.99993 * 22 20 18 25 25 H 1.48500 * 109.47152 * 330.00041 * 22 20 18 26 26 C 1.46926 * 120.63354 * 184.97017 * 12 10 8 27 27 C 1.46493 * 120.00200 * 62.22628 * 7 2 1 28 28 C 1.53003 * 117.49784 * 293.79616 * 27 7 2 29 29 C 1.53003 * 60.00161 * 107.48752 * 28 27 7 30 30 H 1.09000 * 109.47244 * 293.03827 * 1 2 3 31 31 H 1.08998 * 109.47284 * 53.04493 * 1 2 3 32 32 H 1.09002 * 109.47009 * 173.03952 * 1 2 3 33 33 H 1.08995 * 115.55611 * 274.86535 * 4 2 1 34 34 H 1.08996 * 117.49812 * 0.02562 * 5 4 2 35 35 H 1.08995 * 117.49336 * 145.02228 * 5 4 2 36 36 H 1.09001 * 117.49665 * 214.97885 * 6 4 2 37 37 H 1.08995 * 117.50259 * 359.97438 * 6 4 2 38 38 H 1.08991 * 109.58875 * 353.41919 * 13 12 10 39 39 H 1.09000 * 109.58083 * 113.84359 * 13 12 10 40 40 H 1.08992 * 109.56744 * 185.55642 * 14 13 12 41 41 H 1.08998 * 109.36050 * 65.49674 * 14 13 12 42 42 H 1.09004 * 109.45498 * 301.21951 * 15 14 13 43 43 H 1.08997 * 109.44494 * 181.25744 * 15 14 13 44 44 H 0.96997 * 119.99797 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58460 * 246.15592 * 26 12 10 46 46 H 1.09000 * 109.58574 * 6.57396 * 26 12 10 47 47 H 1.09002 * 115.56448 * 148.10384 * 27 7 2 48 48 H 1.08998 * 117.49779 * 359.97438 * 28 27 7 49 49 H 1.09004 * 117.49356 * 214.97734 * 28 27 7 50 50 H 1.09002 * 117.49278 * 107.48482 * 29 28 27 51 51 H 1.08993 * 117.49492 * 252.51044 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.0841 -0.0003 -2.1044 6 6 1.6461 -0.1421 -2.6096 7 7 2.0183 -0.6906 1.1961 8 6 2.7558 -0.0233 2.1057 9 8 2.9406 1.1694 1.9798 10 6 3.3458 -0.7521 3.2694 11 8 2.6901 -0.9186 4.2768 12 7 4.6061 -1.2247 3.1999 13 6 5.4475 -0.9433 2.0287 14 6 5.9827 -2.2615 1.4723 15 6 6.6938 -3.0320 2.5872 16 6 5.6991 -3.3467 3.7069 17 1 4.8717 -3.9313 3.3048 18 6 6.3917 -4.1335 4.7894 19 1 7.4368 -4.3868 4.6884 20 6 5.6913 -4.5304 5.9088 21 7 4.4188 -4.2217 6.0319 22 14 6.5497 -5.5064 7.2504 23 1 7.1288 -4.5720 8.2488 24 1 5.5685 -6.3986 7.9183 25 1 7.6344 -6.3244 6.6506 26 6 5.1626 -2.0361 4.2910 27 6 1.7052 -2.1066 1.4036 28 6 0.2399 -2.4789 1.6386 29 6 0.9125 -2.8226 0.3081 30 1 -0.3634 0.4022 0.9457 31 1 -0.3634 0.6178 -0.8212 32 1 -0.3633 -1.0201 -0.1245 33 1 2.1181 -1.8053 -1.1674 34 1 3.4080 0.9875 -1.7767 35 1 3.8488 -0.6103 -2.5853 36 1 1.4654 -0.8452 -3.4226 37 1 1.0233 0.7524 -2.6146 38 1 4.8545 -0.4400 1.2652 39 1 6.2829 -0.3081 2.3231 40 1 6.6860 -2.0582 0.6648 41 1 5.1526 -2.8564 1.0913 42 1 7.5083 -2.4263 2.9846 43 1 7.0955 -3.9625 2.1861 44 1 3.9260 -4.5012 6.8192 45 1 5.9744 -1.4918 4.7737 46 1 4.3817 -2.2534 5.0198 47 1 2.4624 -2.6828 1.9352 48 1 -0.4910 -1.6703 1.6393 49 1 0.0332 -3.3001 2.3250 50 1 1.1484 -3.8700 0.1192 51 1 0.6241 -2.2402 -0.5668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328164997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:00 Heat of formation + Delta-G solvation = -18.931457 kcal Electronic energy + Delta-G solvation = -31368.518423 eV Core-core repulsion = 27462.502765 eV Total energy + Delta-G solvation = -3906.015658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.28010 -40.65373 -39.20977 -38.43609 -37.62888 -35.34511 -34.45365 -33.56980 -31.96541 -31.58742 -27.78942 -26.89218 -25.69460 -24.35398 -23.85322 -23.51810 -23.08545 -22.86948 -21.32102 -20.75589 -20.13910 -19.03495 -18.35404 -17.98225 -17.58753 -16.68730 -16.59597 -16.10512 -16.03620 -15.65621 -15.44898 -15.28428 -15.21669 -14.88859 -14.59299 -14.43920 -14.29912 -14.10717 -13.88547 -13.64485 -13.49398 -12.90314 -12.82306 -12.74542 -12.64843 -12.41774 -12.34308 -12.31926 -12.26003 -12.11441 -11.86699 -11.70084 -11.59042 -11.52393 -11.18507 -11.10160 -10.97909 -10.85999 -10.58013 -10.49311 -9.75054 -9.64956 -8.11721 -6.27436 0.88209 0.98849 1.42000 1.43501 1.50673 1.53235 2.17534 2.42878 2.74447 2.92954 3.03313 3.18144 3.59556 3.65498 3.84473 3.88686 3.89411 4.06309 4.07116 4.15736 4.18230 4.25102 4.34317 4.40820 4.49588 4.63635 4.66428 4.68452 4.71955 4.75277 4.75926 4.86292 4.86608 4.99170 5.04775 5.07992 5.14608 5.16654 5.17230 5.21433 5.28716 5.29634 5.33421 5.40306 5.41452 5.58380 5.84818 5.92333 5.93849 6.27611 6.31495 6.58035 6.79156 6.87924 7.42802 8.91952 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.003699 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.754388 B = 7567.347640 C = 7941.250522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.160 3.840 3 H 0.086 0.914 4 C -0.185 4.185 5 C -0.185 4.185 6 C -0.147 4.147 7 N -0.545 5.545 8 C 0.529 3.471 9 O -0.547 6.547 10 C 0.501 3.499 11 O -0.560 6.560 12 N -0.585 5.585 13 C 0.104 3.896 14 C -0.119 4.119 15 C -0.105 4.105 16 C 0.044 3.956 17 H -0.002 1.002 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 0.954 3.046 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.262 1.262 26 C 0.123 3.877 27 C 0.035 3.965 28 C -0.192 4.192 29 C -0.151 4.151 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.260 0.740 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.097 0.903 50 H 0.121 0.879 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 4.826 -20.870 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.059 3.941 3 H 0.105 0.895 4 C -0.204 4.204 5 C -0.221 4.221 6 C -0.184 4.184 7 N -0.276 5.276 8 C 0.312 3.688 9 O -0.424 6.424 10 C 0.283 3.717 11 O -0.438 6.438 12 N -0.318 5.318 13 C -0.017 4.017 14 C -0.156 4.156 15 C -0.143 4.143 16 C 0.024 3.976 17 H 0.016 0.984 18 C -0.572 4.572 19 H 0.082 0.918 20 C -0.186 4.186 21 N -0.552 5.552 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.186 1.186 26 C 0.002 3.998 27 C -0.070 4.070 28 C -0.231 4.231 29 C -0.188 4.188 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.119 0.881 48 H 0.128 0.872 49 H 0.116 0.884 50 H 0.139 0.861 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.355 5.362 -20.295 21.932 hybrid contribution 0.367 -0.421 1.850 1.932 sum -5.988 4.941 -18.445 20.012 Atomic orbital electron populations 1.22518 0.92801 1.04700 1.02675 1.20932 0.95520 0.96139 0.81535 0.89549 1.22862 1.06165 1.00532 0.90826 1.23098 0.93477 1.01752 1.03820 1.23048 0.97108 1.03330 0.94921 1.47407 1.49824 1.10058 1.20297 1.20047 0.79355 0.87104 0.82263 1.90719 1.62063 1.14650 1.75013 1.20580 0.83130 0.79503 0.88471 1.90772 1.61869 1.58130 1.33069 1.48559 1.11933 1.49514 1.21765 1.21895 0.94794 0.98814 0.86234 1.21792 1.00749 0.94676 0.98418 1.21536 0.97907 0.99572 0.95287 1.18881 0.94022 0.90971 0.93679 0.98375 1.21487 0.97088 1.34381 1.04262 0.91818 1.25827 0.95308 0.96849 1.00601 1.70044 1.09148 1.46741 1.29259 0.85605 0.78422 0.78668 0.79281 1.20449 1.21348 1.18617 1.21986 0.98018 0.91048 0.88749 1.21729 0.96291 0.81341 1.07605 1.23647 0.94487 1.04120 1.00800 1.23922 0.99416 1.02281 0.93147 0.93706 0.88840 0.89359 0.85544 0.89733 0.87799 0.86605 0.87902 0.90068 0.90039 0.87635 0.92177 0.92530 0.92039 0.93089 0.94181 0.89991 0.88101 0.87217 0.88444 0.86099 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 7.62 71.98 0.55 -2.32 16 2 C 0.16 3.44 2.76 44.99 0.12 3.56 16 3 H 0.09 2.18 6.68 -2.38 -0.02 2.16 16 4 C -0.19 -2.90 4.06 -10.79 -0.04 -2.94 16 5 C -0.18 -2.72 10.18 30.62 0.31 -2.40 16 6 C -0.15 -1.56 9.82 30.62 0.30 -1.26 16 7 N -0.54 -15.70 2.72 -775.60 -2.11 -17.81 16 8 C 0.53 19.95 5.45 87.27 0.48 20.43 16 9 O -0.55 -22.25 16.44 -3.24 -0.05 -22.30 16 10 C 0.50 22.43 5.83 87.27 0.51 22.93 16 11 O -0.56 -30.01 16.53 -3.26 -0.05 -30.07 16 12 N -0.59 -24.67 2.98 -821.32 -2.45 -27.11 16 13 C 0.10 3.35 6.33 86.22 0.55 3.90 16 14 C -0.12 -3.43 6.07 30.53 0.19 -3.24 16 15 C -0.11 -3.87 5.11 30.62 0.16 -3.71 16 16 C 0.04 2.11 2.25 -11.46 -0.03 2.08 16 17 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 18 C -0.53 -28.34 8.56 25.60 0.22 -28.12 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 20 C 0.01 0.76 5.30 84.65 0.45 1.21 16 21 N -0.91 -53.80 11.39 21.45 0.24 -53.56 16 22 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 26 C 0.12 6.12 5.39 86.36 0.47 6.59 16 27 C 0.03 0.96 5.69 45.00 0.26 1.21 16 28 C -0.19 -4.52 9.64 30.60 0.30 -4.22 16 29 C -0.15 -2.67 7.77 30.60 0.24 -2.43 16 30 H 0.04 0.93 7.93 -2.39 -0.02 0.92 16 31 H 0.09 1.12 7.58 -2.39 -0.02 1.11 16 32 H 0.09 1.26 4.10 -2.39 -0.01 1.25 16 33 H 0.13 1.92 5.25 -2.39 -0.01 1.91 16 34 H 0.08 1.43 8.05 -2.39 -0.02 1.42 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.97 7.72 -2.39 -0.02 0.95 16 38 H 0.08 2.41 6.31 -2.39 -0.02 2.40 16 39 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 44 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 4.84 5.15 -2.39 -0.01 4.83 16 47 H 0.10 3.51 7.27 -2.39 -0.02 3.49 16 48 H 0.11 2.42 6.05 -2.39 -0.01 2.40 16 49 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 50 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.14 1.87 3.67 -2.39 -0.01 1.86 16 Total: -1.00 -71.70 390.12 3.55 -68.15 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.93 Total: 26.11 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.01 Total: 11.25 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -4.31 Total: -98.48 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.11 Total: -52.37 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.70 3.55 -68.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328164997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.220 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds